LOC103034933 (LOC108431189,LOC101061116)


Basic Information

Item Value
gene id LOC103034933
gene name LOC108431189,LOC101061116
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 21355119 ~ 21371584 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254475.2
CActaaactacacacactctactctactctactctgcACCGAAGCCACGCTGCAGTGAGGACGCGTCCTGAGGAACAGCGCGTGTTCCCTGTGTGTACTGTCTGCACCTTCCTGCAGTGTTTTCTACAACTTTCACACGGTCTCTGTTTATTACAGACAGAAATATCAGGCAACCCAGAGCCCTATTTTTGTTTTGAGTAATCTTAAAAGTGTCCCGGTCATTTCGCTTTTTTCTACGATACGATTTTCTTGTAGTAACGCTCTGCTTTCCAAAAGGCTGCTCTTACTGGAGGACCGACACCTGTTTCCACGAGTTTCCCcaagctcagagagagagagataaaaagagagcgagagcgtgtgtgaaagagagagagaggttggtTCAGCGCTGCTCTGATATCTGAGGTGGGTTTTATACACATTTCTGAGACGCTCGTTCAAGGTCGTGGGATTCTGCAGCACAGCGCCTTCACAAGTTTCAGAGATTATGAGGTGATTTGGAATGACGGCGCTATCATGTGGAAGAGTACCCCCTCAGCACGCTGCTCCCGTTTTCACCATTCTAATGTCGGCCCAATGCCAGAGGAGGACAAGAGATTGAGACGAGTGTGCTCTGCCGTTCTTCAGAGATGAATGACATCTCTCCGAGCACTGCTACCATGTTCCATCAGCTGACTGAGAGTGCCCCGAATGACAGCTGCTACTACAGTGAATGCAACAGCACCACTGGGGAAGCGGCTCTGCAGCTGCCCACCTTCTCTGCGGCGGCCAAAGCCCGGGTGATCATCACCTTCACCCTGTGCGCCGTTTCGGCCGCGTGCAACTTGGCCGTGCTGTGGGCAGCCAGCACCAGCACCCGTCGCAAATCACACGTACGCATCCTGATCATCAACCTAACTGTAGCAGACCTGCTGGTCACTTTCATCGTGATGCCCGTGGACGCAGCTTGGAACATCACGGTGCAGTGGCTGGCTGGTGACTTTGCCTGCCGGCTGCTCATGTTCCTCAAACTGGTTGCCATGTACTCATGCGCCTTCGTCACCGTGGTCATCAGCCTGGATCGCCACTCTGCCATCCTTAACCCTCTTGCCATCAGCGAGGCCAAGAAGAAGAGCAAAATCATGTTAAGTGCTGCCTGGGCCATGAGCATTGTGCTTTCCGTCCCTCAGATGTTCATATTTCACACGGTGACCATCACAGTTCCTGCCAACTTTACACAGTGCACCACACGAGGCAGCTTCGTAAAGCACTGGCAAGAGACACTTTACAATATGTTCACCTTTGTCTGTCTGTTCCTGCTGCCTCTGGTCATCATGATCTTCTGCTACACGCGCATCCTGCTGGAGATCTCTCAGCGGCTGTCCAAAGGAAACAtATCTTCAAAAGAGGTCCACCTGCGCCGCTCCAACAACTACATCCCAAAGGCCCGGATGAGAACTTTGAAAATGAGTATCGTCATCGTGACTTCGTTCATTGTGTGTTGGACACCATACTATCTCCTGGGCCTGTGGTACTGGTTCCTCCCTGATGACTTGGAGGAGACcgtttctcactctcttactcacaTGTTATTTATTTTCGGCCTCTTCAATGCCATTCTTGACCCCATCACTTACGGCTTATTCACTATCCACTTTCGCAAAGGGCTAAAACGCTACTGCCGTGGCGCGACTGCTCTAACCGAGCTGGAAAACAACACGGTTCTAACTGGCTCTTTGAAATGTTCACCGTCTCCTTTGTGCAAGAAAGGGTTGCAGAGGCAGAGCCAGAAAACGAAGGCTCTGGAAGGGAGAGAGGGTAAGAAGTCAGGGTCACAAAGAAGCAATCTTGTAATGCATGAAATGGAAGGTGGTCAGCCAAATCTGTCCACTCAAGAAAGTGTTATATGACTGTTGGATAATGAAATTCAGCTGAAAACCCCAAGCATGTCGCTTGTCATGGTGAGGATTCTTGGAATCCGCCCAGGACTTACTCTTCAGACTGAAGTGCAGTCCCACTCCTGATGGCTTCATAAGCACATTCCCACTCCTGATGGCttgttgtctgtctgttttttgcCCCCATCTCATGCACTATTGCACATTTCTGGGAAGTGAAGCATTTCAGCCTGATTGTACGCAGATGATACGGCTGTTTTACTCCATACAAGGCAATGGGTTTTtattcacatacacacagcatATGGATTCAAGATATATTACAAATGCAAATTGAATGAAGGTGGAACCTCAGACGATTTCCTGATGTTTATTGGAGACCTTCAATCTTGCACTGTCTGGAATATTACCCCCACCCTTTCAGATTGACTATTTATTTGGGATTTTCTGCAGATAATCTTCAAAGAGCAGGGCTTTGAATCTATAATAGTACATATTGCAATGCTAATAAACACCAAGGCGTTGCTCAGATTGCCGATTGCAGATTTAAACCTAATAATGAGGAGGAATGTGTACTGCCTGTGGGACTATAGCTTTAAAATGAGAATCTGCTGGTGAAGGGAAGAGTAGGTGAATGTGTTATATGTACAATTCTTCTCAGGGAGCGTGCTGCCTTCATTATTAAGGTACTGGAATCCAACTGGAGACAAACTAACTGTATAATGTTTCTCAATAGTGCCATGTGCAAATGtacttaaatatacttaatttaaCGTGTTGTGATCATGTGATCTGGCCTGAATGTTCATGTGTTTataatgcacttttttttttgcgtccACATGTGGAAAACTTGTTTTTGTTCCTACAATCTCCTTGATCCATAAGCTAGGAAAAGACATTCTCTGATGTGAGAGATGGCTTTCTAATGACATCCCTGAAAAGCATCTAAAAATAACCCAAATACCTCTTTAGGTCTTTTCTTTTTGCCTTGCTACAAAAGCAAAgagaaaggattttttttaatatataaatacattgaaAAATGTCCATCATAACCATTAACCTAATGCATTTGCCGGAGGCTCTTCTTCCAGAATACTCTTCTGCAGCAGCCCATAGCATCCTGTAGTTAGGCTGGTTGCGCTCTTCATGCCTCTGAAGGGTCTCTTTGGGCCACTGGCCTGCCTCAGCTGCAGGAAACGCAGAGAAAATATTGACGGGTTTTAGTCCTCCCTTATTTCCACCCAAGCATGAAAGACCCAATCTGTTGTATTGAATGGATGCTGGCAGTGAAAGAGATAAGCATGTGCCAGAGAGCTTggcacaaacatgctcacaagGCAACTCTTCAGCAGATCACTTCTGAGCTTTAAGGCGCTTTAGGAATGACATGCTGGGCCAGTATATCAGCTTAAGATGCTTCTCAAGGAACAGACATGCTTAAGTGATGTTTATTCTGATTCATGCTTATTATTGggcattcattattttatagaaaagagaatgaaaattaaaataattcagttcGGTCATGATCAATTGATATTTACAGTACACTTTTCTGTCGGTGGTAAAGGTGTCGTGCAGTAAATAAATGGGAAAATTGGTTATATTTGCCTGTATGTATAAAACTGTGCAATCCACAAATTACTAAGTAGGTGTGATAAAAGAACATCTGAGTAAATACTTTAGTTTTTTGTGCATGGCATTAAAGCATGTGCAGTCTGTTTTATTCTTTGCAGCTTATCAATACAGTTTaaattaggcctgtcatgataatgttttgttgttgttggttgATACATTGTCAGAAATTATGGagttaatatagtataatatatcattttatgCTACTGATATGAAGATAATATGATAGCATATTCATgaaattacacccttttaaagtgCAATAAATGTTTTGACAATTAAGAATTTTCAGACCTTACATTTAGAAAAGGTCAGTGTCACAGGCTCGTTTACAAAAATCTCACTATAGAATGGATTGCAGTCTTGAGTCATGAATCAGATCATTTTTCAGATATAAGCAAAATACTGAGACGAATTTTCCTCACTGGCACATCATAGTGATGCCAGTGATGCTACTTCAATTGTGAGACCATGCTTAATGTATTACTATTGTCATTTAATGATAGACCAATAAGGCAAAGTCAGACGGGGCATTCTTAGCACCTTCTCATGTCTCATGCTTGTTTTTAAAATGGATGCAATGCACACATCACCAGGCCAAAgcgttttttgttttcttacagCCTTTAAGAGTCATTGCTTTGCTTCAAtaaacagtgtgaaagactacagTAGCAGTAAAACAGCAATCCATATGATTCTGGTTAAATTTTGGTAGCTAGTCCATGTTACTAAAGTATTGGAAATTGGCTCTTTTCCAACACAATAGGTCAGTAAAAATGACCAAGATCAtgtccatatacagctctggaaaaaaaattaagagaccacctcagtttctgaatcagtttctctgattttgctaattataagtacatatttgagtaaaataaaca

Function

NR:

description
PREDICTED: putative gonadotropin-releasing hormone II receptor

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0097211 cellular response to gonadotropin-releasing hormone biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004968 gonadotropin-releasing hormone receptor activity molecular_function

KEGG:

id description
K04280 GNRHR; gonadotropin-releasing hormone receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254475.2 True 4426 mRNA 0.43 4 21355119 21371584

Neighbor

gene id symbol gene type direction distance location
LOC103034607 si:dkeyp-59c12.1,LOC108431221,LOC105905574,LOC107715203 coding upstream 99159 21251704 ~ 21255960 (+)
rgma rgma,LOC107715216,LOC107690376,LOC107715612,LOC107693037 coding upstream 347829 20986624 ~ 21007290 (+)
lysmd4 NA coding upstream 603323 20745568 ~ 20751796 (+)
arrdc4 NA coding upstream 680892 20666244 ~ 20674227 (+)
LOC103025942 NA coding upstream 1507561 19775339 ~ 19847558 (+)
pex11a LOC108431222,LOC107714788,LOC107556261,LOC107690406,LOC107715221,LOC107691149 coding downstream 85772 21457356 ~ 21461379 (+)
LOC103031832 NA coding downstream 260176 21631760 ~ 21699721 (+)
LOC103025486 fli1,LOC107692484,LOC106612965 coding downstream 629076 22000660 ~ 22061810 (+)
LOC103026111 LOC108434138 coding downstream 705894 22077478 ~ 22079758 (+)
LOC103026427 NA coding downstream 709610 22081194 ~ 22084499 (+)
G159790 NA non-coding upstream 148448 21146273 ~ 21206671 (+)
G159781 slco3a1,LOC107690372,LOC107601651,LOC107715617,LOC107693030 non-coding upstream 229023 21089743 ~ 21126096 (+)
G159778 NA non-coding upstream 273790 21080716 ~ 21081329 (+)
G159777 NA non-coding upstream 277694 21077219 ~ 21077425 (+)
G159744 NA non-coding upstream 457581 20897151 ~ 20897538 (+)
G159836 NA non-coding downstream 64265 21435849 ~ 21443252 (+)
G159864 NA non-coding downstream 119805 21491389 ~ 21491751 (+)
G159868 NA non-coding downstream 137011 21508595 ~ 21508833 (+)
G159891 NA non-coding downstream 380921 21752505 ~ 21752999 (+)
G159896 NA non-coding downstream 476033 21847617 ~ 21850541 (+)
fam174b NA other upstream 280546 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 343325 21009302 ~ 21011794 (+)
G159728 NA other upstream 618070 20736598 ~ 20737049 (+)
G159666 NA other upstream 1168200 20185516 ~ 20186919 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other upstream 2778682 18525528 ~ 18576437 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other downstream 776260 22147844 ~ 22152785 (+)
G160134 NA other downstream 1481828 22853412 ~ 22854081 (+)
G160306 NA other downstream 2747545 24119129 ~ 24119825 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 4952236 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 5245678 26617262 ~ 26755313 (+)

Expression


Co-expression Network