sema4b (sema4b,LOC107714785,LOC107556264,LOC107691120,LOC107715225)


Basic Information

Item Value
gene id sema4b
gene name sema4b,LOC107714785,LOC107556264,LOC107691120,LOC107715225
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 26193982 ~ 26318388 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254480.3
tgctgctgcctcTGCTCGTAGTGGCTGGCGTCTTCTCTGTGCAGGCACTGGGTTCTCTGTGCTGTGGTAGCCGCAGCCCTGGGCGTCTCTGGGGGATCCCTGCAGAGCTTGCTGTTCTTCCTTTTTCCCCTCTTCTGTGACGGAGCAGGAGGGACCCCGCTGTCCGTGAGCCGCTGTCTGAGGGCGTGAGTCTAAGCGTACTGCTGCAGTGAACACATGGAGGCTGATATGAGTGGACTGTCCGTTCGGGGAGACTCGTCAGTTCGTGGAAAGACGGTTTTGTGAAGTTGAGTTCACCTCAAGATCCAGGAATCCCTGCAGCACAGCATCCATCATCACAACACTCGCTGCTCTGACACTCAAGAGAGCCTGAGGAACTACTGGGAGATCTCAACAGAGgactgcagaaataaataaggAGAAAAGAGAGGCTCTACATGCATTCCATAAGCTCCTGAGAGTTAGAGAAGGTAGTGAGATCTCAGAGGAGCAGCATGCGGACAGCTAGGATGGCGTGGCCCTCTTTCCAAGCCTGTTCCCTTTTACTCCTCGCCCTTCTCTTCCTCTTGGCCACAACAGCGCAGAGAGTCGAGGATGATGTCACGCCACGGCTGAGCTTTCCATATGATGCAAAGGAGAGGTCGGCCAAGAGGTTTTCAGCTGAAGGAGTCTTCAATTACACCTCTCTGCTCCTCAGCCCGGAAGACGGCACGCTTTACGTAGGCGCCCGAGAGGCTCTCTTTGCCCTGAACCTCAGCGATATCAGCCGACCACTGCAGCGCaatttcacaTGGAGCACGCCGGAAGAGAAGCGAGACGAGTGCAGCTTCAAAGGCAAAGACTTGCAAACTGACTGTTTCAATTACATCAAGATTCTGCTGCGTGTGAACGCTACTCATCTGTACGTGTGCGGGACGTACGCCTTCAGCCCGATCTGCGCGTACATCaACACAGTGAATTTCTCTCTGGTGCGCAGCGGGTCGGGCGAGATCGTGACGGAGGATGGGCGGAGCCGCTGTCCTTTTAACCCAGAGTACAAGTCCACTGCCATCATGGCCGATGGAGAGCTGTACGCTGGCACCGTCAGTAACTTCCAAGGGAACGAACCCATCATTTACAAGAGCCTTGGCCACGGCACTGCCTTAAAGACAGAGAACTCGTTGAACTGGCTTCAAGACCCGGCGTTTGTGGGCTCTGCCTACATCCAGGAGAGCCTGCCTAAAGGCAACGTGGTGGGAGATGATGATAAGATTTACTTCTTCTTCAGTGAAGCAGGGAAGGAGTTTGATTTCTTCGACAACACCATTGTGTCGCGTATCGCTCGCGTGTGTAAGGGTGATAAAGGAGGAGAGAGGGTCCTGCAGAAGAAGTGGACCACGTTTCTGAAAGCCCAGCTCCTGTGCTCTCTGCCTGATGATGGCTTCCCTTTTAATATCATCCAGGACATGTTTGTTCTGACCCCCAGCAAAGAGGACTGGAAGAACACTGTGTTCTACGGAGTTTTCACTTCTCAATGGTATAAAGGTGCGTCTGGCAGCTCGGCGGTGTGCGCGTTCACCATGGACCAGGTGGAGGAAGCGTTTAACGGTCGTTACCGGGAGGTTAACAGAGAGACTCAACAGTGGTACACCTATAACCACCCTGTACCAGAGCCTCGACCTGGAGCGTGTATAACTAACGCAGCACGGAGCCAGGGCATCTCCTCTTCACTGCACATGCCTGACAAAGTGCTGAACTTCGTAAAGGATCATTTCCTGATGGACAGCGTGATCCGCAGCCAGCCTCTGCTGCTCAAACGCAGCGTACGCTACACACAGATCGCCGTGCACCAGGTCAAAGCCGCCCACAAGTCCTACAGTGTGCTTTTCATCGGGACAGATGACGGCAAGCTTCATAAAGCCATCAACGCCAAGGGCAAGATGCACATCATCGAGGAGCTGAAGCTGTTCTCCGAACCCCAGCCTGTGCAGCACATCGAGCTGGACGCTCAGAAGGGGCTGCTGTTCATATCTTCCTACTCTGGTCTAGTGGAGCTCCCGGTGGCTAACTGCTCCAACTACCAGAGCTGTGGAGAGTGTGTCCTCTCCAGAGACCCTTACTGCGGCTGGACAAGGGGACAGTGTGTGGATGTCCGGCAGTTTTCTCCTAAAAGTAAATTTCTGCAAGATGTGGAAGATGCAGACACAACATTGTGTAAAGACTCACCCAGTGTTCGCTCTGTACGACCTCCAAGTGCTCCATCCTGTCAGGAGGTCATCATTCCAGCAAACACATTTCGAGTGTTGCCCTGTAAGCTGCGCTCTAACCTGGCTCAGAGGCAATGGAATTACAGCAAGAATGCCGAACGCTTTGCCTACCACACTGACGGTCGGCTTGTGGTGGTAGCTCAGCTGGAGAGAGAGGAATCATACGAATGCTGGTCGGTGGAAAAGAACTTCCGTCAACTCTTGGCCAATTACTGCGTGAAGGCGGAGCCCCGACACGAGAGCACCACCCAGTTTGGCCACTCCCGCACACCCAAGGTGCCCGTAGGGGAGCCTATAATCCTGCCAGGCCAGGCTCAGACAGAAACCAAAACCTACTGGAACGAGCTGATCGTGGTGTGCGCTCTGCTGGGCTTCTCCTTGGTGGTGTTCTCCTTGTTTGTGGTGTACCGGAACCGGGACCGGATGAAGTCCATGCTGAAGGAGGGCGAGTGTCCCAACATGCAGCAGAAGAAGCCACGTATTCCACATGCAAAGCCCACCGAGAGCTTGCCACTGAATGGCAATAACATCCCGCCCTCTGTGTCGGACCACAAGGGCTACCAGACGCTCCACGACAACTACTTCTGCAGCACGCCCACCCAGGAGTGCTCTTCACCTGAAAACAGCAAGAGCTTCTCCGAGTCTGAGAAGCGACCGCTGAACCTGAAGGAGAGCCATGTGGAGATATCGCCTACCTGCCCGCGACCACGAGTTCGCCTGGGCTCGGAGATTAAAGACTCCATCGTCTGAGACGACTCTCAACGTCTCAACGGACGAAGACAACTGAACTGATGTGGTACGGAAGGACTGCTGGGGAACAGACAGCACCTGAGAGGGACATactgaaagataaaaaaacaaatcttcaAACTCCTCACCATCGGACCATTTCACAAGCAAAACATCTTTGATTTACTTTTTGCACTTTGTCCCCTCGTTTCAGTCTTggatgtctgtctgtctgtttgtctgttttccTCACAGTCACTTTGTGTTGCTCTGGGATGCATCTGAATGCACGAGGATTTTCGTACACTTAGTGTTGTGCTAAGATACACCCAGAACGAAAGCAGGCAACACGGCGAGCTTTTCAAAAACATTGCCAATGACATGGCCTAGTGTAAGTCAACCACGTTCCTACTCATTCCGTCCAAATCATCCATCATTTGGCACCATTGACTTTAAGGTCACCTAATAGCCTCACCATCTACTTCATCTACGTATTTGGGTCGTGCCATTGGAGGATCGTGATCTTCTCCCTTACATTGACCACCTCTCCACAAAAGATGGGTCCAGAGTGACCAGAAAAATCAGCAAGGTGCCTAGGATCAGAAGAAAAGCCTAGAAATTGTTGTCTGGTAAAGCAGAATAGATAGCATAGGTCGTAAAATGTGAAcaacttttgtttaaaaaaaaaaaaaaacagcctcatGATATATATGCAAGGCCTGTAGTTGTAAATCATCATGACCTCAGCACAAGACAGGCGTACTATGCAAAGCACTGGGAATTTAGCAGGATGAGGAGGAGTTCCATCTAGTACAGCTAGCGTAGGGCACATGTTGCAGCATCAAGCAAGAAGCCACGTCTTCAGTATCGCTTCCCAGAGATATACAGTCCATGTGTATACTGTCAAGTATGCAAGCGAGATTCAGGTGCTGTTGCGCAGGGAAACGGAGTCCGAAGCCAGGACTCCACGCAGACAGGGCCCAAGAAGGCAAGTGGTAAAAGAGATTGAACTGATGGcagcaaaagagaaagaaaaaagagacacaGGACTCCAGCCCAAAGAGTGAAGGCAGATAGGCTGGCGTTTGGAAGAATCAGAGAAATcagagaaagagaagttttAATAATGAAAGTGACCAATACCAATAATCGTATACTTGTTTACACAACCAAATCTGTCCACTATTGTGCCAAATAGTTACACACTAAATGACTTAATCTCTCATTGGCTTGCAAtatggcacaggggatctaaaaatgttttttcacttgtaTGCGAAGGGGAATAACTTTCATTCTTGTCCACTCAGCTAAATTTGGCTGGAAATTGATTTGCCTTTTAGGCTACATGAGAATCATCCTGTACTCACTCTTTAAATGTACATGTGTCGTTTGtgctttacattttgttttatccTTCATTACCACATAAAAGTGCCACGTTTACCATCCAGGAGCCAAGGATAGTCTTAAGGCCTTTTCACACaaagtacaaacttttttttttgtgaattgtaacgtagtaaaaatgtaaatctgGGGTGTAGAGACTCACTCTATGGCTCTCCAATTTTCACACTTTCTTTTATGTCTCTGCTCCCTGTCTGCTTTTTGCTCTCTTTAAATATACCTCCTCTACACAGGTGCTCATGTGCAAGGAAAGCTATAATACTCCTCGTTGTCAATCATGTCAGCTTTTCAGCTCAGctttataatgtattttctttagcCTCTGCATTTTTATGGTGAGCATGATGCTCATTTGTTTAGCCTGATTTAAAGACATTCAATACATACTGTAGAACACGGAAATAGAGCAGGctcaggttaaaaaaaaaatgtatgcattgTTCCAGTCCATCGGTTTCAGACTCAATCAGACTTCAGATACTTGTTTTCaaaacttgtattttttttgaatgtttaaaaagtCAAACTTGAAGTGAAAAGGCCTTAACACAGTTATTTTGGATGGGCGAATTGACAAATGCACCCCTAATAACTCGCTAATACGTCGCTTGGGTGGTTAGAGcagtgtgtgttattaaaaaCTTGGACCAGAGCTCGGCTGCTAGAGAATAATGAGCGAACTGCCTACTAATAGCGTGTTGTAATAATAAGATATTAACATCATGTCATGTGCAGAATATCTGTATAGTTCATCTTTTCAGAATATTTTCAGAATTGCCATTTCAGTGATTATCAGTAATGAACATTGTGAACTAATATTTTTCCAAAGATGGACATCATATTGCACCACTTTGAGGGTATTTTAATGTACAAACTCAACGGCACTGCTCTGGTAGGAGCGTGTGAACATTTGTGTTGTGGAATGTAGTGACAACTTCATTGAAAGTATTCCAAAACTCTTATTTGAgtacgaaaaaaaaaagtgtcttatTTAAGTTTTAGCCTAGATGTTTCTATATGAGAGATCTTATTTGACATGTTTTGACATGCAGTAGCCATGCATTTATTACGTATGCTACTGTGCTACTGACGGACTGCCGTTGTGGTCATCACATGTACATATGTATATTTCTACGATATTTGTGTTGGGGCTGATTAAAAGGGTATTATTTTTGTGTTCGGGAGGCAAAAACAGATGGCACAATTGCTGCTTTACTTTCACAGaatgtttaacaaaaaaaaaaaagccttagtTCGAGTTCAGTGAGGCTGCGATGATTCTGTTGTAGAGATTTCTTTTAATGCCTTTAAGCTACGTTTTGTGAATCAAGGGTGGTATTTCTTCAACTATCGAACGCATCATTGTAGCCTTTTTTTGGTgtattcacacactcacactaataGACCACAGACCTCACGCGCatgcatgcctcctctgatggACAGTACCATAGAGTTCACACTGGCATGCTcatgtaaagaaaagaaaaa

Function

symbol description
sema4b Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to be located in plasma membrane. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane.

NR:

description
PREDICTED: semaphorin-4B

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K06521 SEMA4, CD100; semaphorin 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254480.3 True 5876 mRNA 0.47 15 26193982 26318388

Neighbor

gene id symbol gene type direction distance location
idh2 idh2,LOC103368556 coding upstream 130668 26046342 ~ 26063314 (+)
ankrd34c ankrd34c,LOC103039005,LOC107691151,LOC107556256,LOC107715204,LOC107690404,LOC107551450 coding upstream 157282 26029799 ~ 26036700 (+)
blm NA coding upstream 329959 25845616 ~ 25864023 (+)
frmd5 frmd5,LOC108435336,LOC570903,LOC107562133,LOC107556247 coding upstream 355916 25689253 ~ 25838066 (+)
LOC103042827 NA coding upstream 507959 25664786 ~ 25686023 (+)
LOC103030887 NA coding downstream 438194 26756582 ~ 26789753 (+)
veph1 veph1,LOC106613251 coding downstream 535492 26853880 ~ 27052199 (+)
LOC103022175 LOC103022175,LOC108437972 coding downstream 770487 27088875 ~ 27103594 (+)
LOC111194784 LOC107688027,LOC107751101,LOC107570926,LOC107731862,LOC106579815,LOC106606817 coding downstream 884106 27202494 ~ 27203910 (+)
ssr3 ssr3,LOC107571207,LOC106581450 coding downstream 1105122 27423510 ~ 27429781 (+)
G160755 NA non-coding upstream 109147 26084594 ~ 26084835 (+)
G160746 NA non-coding upstream 200011 25993720 ~ 25993971 (+)
G160732 NA non-coding upstream 246975 25946795 ~ 25947007 (+)
LOC111194781 NA non-coding upstream 351045 25838438 ~ 25842937 (+)
G160654 NA non-coding upstream 454621 25738787 ~ 25739361 (+)
G160803 NA non-coding downstream 29249 26347637 ~ 26349594 (+)
G160804 NA non-coding downstream 45716 26364104 ~ 26364360 (+)
G160805 LOC108431224,LOC107714781,LOC107715224 non-coding downstream 51261 26369649 ~ 26369877 (+)
G160806 NA non-coding downstream 51834 26370222 ~ 26370440 (+)
G160815 NA non-coding downstream 96485 26414873 ~ 26415185 (+)
G160306 NA other upstream 2074157 24119129 ~ 24119825 (+)
G160134 NA other upstream 3339901 22853412 ~ 22854081 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other upstream 4041197 22147844 ~ 22152785 (+)
fam174b NA other upstream 5119409 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 5182188 21009302 ~ 21011794 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 5432 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 298874 26617262 ~ 26755313 (+)
G160919 ptx3 other downstream 586856 26905244 ~ 26907627 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other downstream 791283 27109671 ~ 27119264 (+)
c18h3orf33 NA other downstream 1466508 27784896 ~ 27796504 (+)

Expression


Co-expression Network