ankrd34c (ankrd34c,LOC103039005,LOC107691151,LOC107556256,LOC107715204,LOC107690404,LOC107551450)


Basic Information

Item Value
gene id ankrd34c
gene name ankrd34c,LOC103039005,LOC107691151,LOC107556256,LOC107715204,LOC107690404,LOC107551450
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 26029799 ~ 26036700 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254489.3
agaagttaTTTATATCCTCCGCGTCTCAGTGTGATTCTTGAGTGCGCAAAGAGGAATGTAGCTGTTGGACTGATCTTCGGCGCGGCGCTGCTGCTGGTGCGCCATGGTGCTTTCTTTACTTACATGCAGCTAAAATAGGACAGCTCTGCCGGGGCTGCGCTCCACCACCGCGGGCTCTGCGATGATCAACACACTTCCTCACAGTTAGTGAAAGAGCGCGGGAGCGCATTACAGCCGCCGCTTCTGGATTTATTCCGACATGACTAACCTCCCTCACAGCCAGGACTGAGGCTGAACAGGGGCCAGTCTGGAATAATGGCAGATATTCTGGAGCTGCGAACAGATGGTAACTCCTTGCTGAAGGCAGTTTGGCTGCGCCGTCTTCGGCTCACCCGCCTCCTTTTGGAGGGGGGTGCTTACATCAACGAAAGTAATGACCGTGGTGAAACACCCCTCATGGTGGCCTGTATGTCCAAACACACCGACCAACAGAGTGTCAGCAAAGCCAAGTTGGTCAAGTACCTTCTGGACAACAAAGCTGACCCCAACATTCAGGACAAGGCAGGCAGAACAGCCCTCATGCATGCCTGTAGTCAGAGGGCTGGACATGAGGTAGTGTCCCTACTGCTGACCAATGGGGCAGATCCCAGCCTGGAGGACCGCAGTGGATCATCTGCCTTGGTGTATGCAGTCAATGCGGACGATAAAGAAACCCTCAAAGTGCTCCTGGATGCCTGTAAAGCCAAGGGCAAGGAGGTCATTATTATAACTACAGACAAGTCACCCTCTGGCACCAAAACCACCAAGCAGTACCTGAATGTTCCTCCCTCTCCAGAACTGGAGGAGAGAAACTCTCCTGTCCCATGTGCCTCCCCTTCAGACATTGACTTTCACACCTCTTCATTCCccataaaagaagaagaagaaaaaaacactgtcttCACCTTTCAGAGCAAGTTTAAGGCATCCTCCTCCACAGCAGCCAAGCTTCCCAACGGCCCTACTTCCCCCATCCGGAAACCTGGAAACCCAAAGCGAGCTCGCCTTCCACAGCTGAAACGCTTGCAGTCTGAGCCCTGGGGGCTAATTGCACCGTCTGTACTGGCTGCCACCCAGGAGGAGAGTAAAAGAGCCAACAGTGATGAGGATGTCGTCAGTGGTGTCAATGGACTGACTCTGTCCAAGAGAGCCCCTCTTTCTCGGCACAATAGTGTGGATGGCAAAGAGATCCTGTTTCCATTAGTGGGGGAGCAGTCTACCAAAATCTCCCCTACTTCATCCCTCCCCCCACCCTCCAAGGTCTCCTATGAGAGATCTTTAGGACAACATCAGCCACTGGCACGTCGGAGCACCATCCCAACTGAGCAGGAAAGTTCTGTAGGAACGACTGGGTCTGTCAGCCTCAGAGACACAATGCATCGGAGGAGACTGGGGAATGAGCAGTACGATTCAGATTCCCAGTTGTACTCAGACTCTGGAATGCTAGACTCCCCCAAGATCCCCTTGGAGAGGAGGAAACTCAACACATCACCACTGGCTATGCTTACGGGCTCACGCGAGTCCCTGGACAGCAATGCCAGCACTTCTTCTCCTAGCACCGCCAGACGCCGAGCTCCAGGGTTACTGGAACGGCGTGGGTCGGGAACTTTGCTTCTGGACTACATTTCTCATACACGGCCCGGTCACTTGCCCCCACTCAATGTCAACCCCAACCCTCCTATCCCAGACATAGGTGCCAGCAGCAAGCCCTCATCCCCACTCGCAGCAGGATTCCGGTCTATAGCTCCTGTAGCACCAAACTCACCAAAGAGAGGCAACCTCAGGATGAAGAAGAAACTAGTTAGAAGGCACTCTATGCAAGTGGAGCAGATGAAGCAGCTTTCAGACTTCGAGGAGCTCAGCAATCAGTGATGGGAATCAGCGTGTTCAGATGTAGCAACTCCCGCATCAAGAAAAGCAAGTCAGTGATCAGACCCGGGAATTAGTACGGTAATGGAGTTCAGACAGTGTTACTATTGATTGCAGTCACTAAGCCATTGGGAATAAAGACACAGACACAACAATagacacacactacacacacggTTAACAGATTGATTTGCATTTCCATTCACCGCTGTGCCATTAAATTAGAACAAAATACTGTACAAGATAAGTAAAATTAGTAAGAATACTCCTTAATACTACTCAGAAAACATATTTGCATTCAGAGATTTGATCTTCTAAGTAAGCGAAACTAAAGTTATTTTCAATTAATACATACACTCTacatactaaatataaatattctatatataatatataggttATTGTGACATGGCTATGACATACAATGACAAAAAGTAGCAACAGCAAGTAACAACAGTGCAGTTTGCTATTTAGCAAAAACACCAGTGTTCTTAAAGAGCAGGTGAAGCTTAACGCCATTATACACCTGCACAGAGTGATCGAATTTGACAGCTCGACTATTGCTGCGTCTGGAAGCAAACTCTTCATCTGTAAACAAAAGCAAAGATAGAATGATGTGTCAAGATATCAAAGTCTAGACATCTCTGTGAGAGACTTATTAAAGGCAGCGGAGGAGAGCAATTGTGAAAGCAGGCTGTCAGACCCAGTAGAGAGGTCACCAACATAATGCCCTTTAAAGCAGAGAGTTCTGAGATCAAATTAAACCCAAAAGAGTAGAGGAGATAAGGAACATACTGACTTTGACCACTACTATCACTATTGTACAGGTAGCCTACCTGTTAAATATCGCCATTCTTTATacatgtgtgtatagtgttatcATTTGAACTACACTATGAGGAAAAATACTGATTATTATTGAGATAATCACTGAATCTGTTTTggatgtgataaaaaaaatctgtttgggTGCAATAATACATGCAACACTGCAACATCATGACTTACTCCTTAATGCAAGTTTGGCTCCTCCTTGGAGTTGTTCAGTTGACTTGTGGAACATTTTGTCTTCACGGGTAGTTAgtatgttgttttattgaagcCTTTCATCACTGCAGTATGAAGTACTGAATGTTGTAGCTATTTAGTATATAGTGCCTTTGGAGGATGGGAAAGACGTTTCTGCCCAGCACTGGCTTCAAAGCCCCTTGAACAGTTTACTCAGTCAGTGTATGAAACACAGTCTTAGGTTAAGGTTACTCTATACAATCAACATGAACATTGTGGTAAAATTGggctttcatttatttctttaaacttattttgtgTACAACATACTTTCTAGTTTTCTACCAATTTGGAAGGCGCATTACTTGATTAGCCCCTACATACAAGCCATGGCCTCGCAACTTCCTGTGAATGATCATGAATGACTACAGCTTGTAGTTTATCTGTGCATACATAAAAAGGGTTTGTTCAATAGTACTTATAGGATCAACCAACACACAGTACAATAGGAAAGTCCAAAGAGCTCAGACCTCAGATCACACCCAAACTGTTGTCCCCTAGCTGAAGGAAAAGACACAGGCCTGCCATGAACTGAAAGATGCTGGAACATCAGTGCCAAGATGCttgtacatttaaaaactattgccaactgttaagcatggtggtggtagcttTGTGGCTGTTTAGCTTGCAGTAGAACTGTCACATTACGATGGATAAAATAATGAAGGAGGACAACCTTATAATTATTTGGCATAATCTCAAACCATCAGCTAGTTGGTACAAGCAGGCTAAAAATTGTATGTTCCAACAGAACAAAGACCGCAAATATCAAAGGCTTAAAGCAAGTGAACATTAAGCTTTTTGAATAGACTTTCTGATATCAACCCATTTGCCACGAAACCAACCAATTTCATTGAAGTGATGATATCCTCCAATCAGAGGTCTGCCAGAAACTTGTAGAAGGCTTCCAAAACTGTCTATTTATAGATTGACTTTCCAAAAAATATAACTAGTTTACCAACTTCTTGTTTGATGTGTGTTGTACAATTGTTCTGCcccaaaacaagaaaaaaaaagaaataactgAAAGCCCAATATTTTCATGGCATGTccgagttggggagttgaggataaGGTGGCCTCTGgacactgaatgcaatcaaatcctcacagagtTCCATAATCTAGTAGAAAACCTTATCCGGGAGGACAgtagacagttactccaacaaaagcagggtaAACTCTTTTTACGTCTGTAGCGGAACATGTCTTTTGATGCCAGTGATCAATTAGTATCTCCTCAGTATTCATTGGATCTTAAGCCTTTTTCTGGGAGACTCCCACAGTGTGTCTTTCCTGCTCTCCAATCCcacctgattcaactcatcAGCTAATAATGGAGCCCTTCACATGCTGAATCAGGGGTGTTATAAAGACAAAGCTGTGCAGAGAAGAGGTCGCTGACAGCCTGGAATCTGTGCAGAATGTCAGTGTAGATTCATTCCCATTCAGCCAATTTAAGATGATAGAACAGATGTGTAACTTTTTTTGTGCAATTGCAAAGTGCTTTAGATCACTTGCTGCTATAATGTCTCCTAGCTGCTCCACTGAGTTAGTTCCTGAGTTGTTCTAGGGctgctattaaaaataaatgttgtgaaTTGTGAGAGTTAGCTGGCTAACTCTTTAAACGATAGAAACCATTTAGAAAAATATAGATCATATAACAAGCAATCAACAGATGCAGTGCTCCTCCGTTTTCTGATACAATTCAGCCCACTCACAGGGTTTACAGTGTTCACAACTGATACAGTAGCctatctttaaataaaaaaatatatatgtttaaacatatatatttagacaACTTTAAATGTGAAAATCTGAAATGTGTGATGATTTGACAgatatcacaaaaaatacatgacttacaccaaaaaaatctacatgGGTTCCAGAAATAATTCTATTGGCTCAATGtggaaatactgtatatatccaCAGGTGAGGCATAACAGATAATAGACAACAAAACAATAGCTTTCCCCTGAAAGACATTGCTGTTCATAGAGACACAAAATAGAATTTAGTTTACATTTCTAAGTTCATGATGTcttacagttattaagtctATGTGATCAcatgaataaaaacatgacagttATCACATACATAAAACTGTGAGACAGCACCATTGGTTGTAAGGCTGATGTTTACATTGTACGATGCATAGTATTTTTGTATGTAGTACTCtgtatattttgaataaatgtatgtctgcaatgtt

Function

symbol description
ankrd34c Orthologous to human ANKRD34C (ankyrin repeat domain 34C).

NR:

description
PREDICTED: ankyrin repeat domain-containing protein 34C

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254489.3 True 5209 mRNA 0.43 2 26029799 26036700

Neighbor

gene id symbol gene type direction distance location
blm NA coding upstream 165776 25845616 ~ 25864023 (+)
frmd5 frmd5,LOC108435336,LOC570903,LOC107562133,LOC107556247 coding upstream 191733 25689253 ~ 25838066 (+)
LOC103042827 NA coding upstream 343776 25664786 ~ 25686023 (+)
LOC103041999 LOC108435342,LOC107709801,LOC107691146 coding upstream 386304 25632584 ~ 25643495 (+)
LOC111194838 LOC108435311 coding upstream 435545 25593386 ~ 25594254 (+)
idh2 idh2,LOC103368556 coding downstream 9642 26046342 ~ 26063314 (+)
sema4b sema4b,LOC107714785,LOC107556264,LOC107691120,LOC107715225 coding downstream 157282 26193982 ~ 26318388 (+)
LOC103030887 NA coding downstream 719882 26756582 ~ 26789753 (+)
veph1 veph1,LOC106613251 coding downstream 817180 26853880 ~ 27052199 (+)
LOC103022175 LOC103022175,LOC108437972 coding downstream 1052175 27088875 ~ 27103594 (+)
G160746 NA non-coding upstream 35828 25993720 ~ 25993971 (+)
G160732 NA non-coding upstream 82792 25946795 ~ 25947007 (+)
LOC111194781 NA non-coding upstream 186862 25838438 ~ 25842937 (+)
G160654 NA non-coding upstream 290438 25738787 ~ 25739361 (+)
G160647 NA non-coding upstream 323547 25704517 ~ 25706252 (+)
G160755 NA non-coding downstream 47894 26084594 ~ 26084835 (+)
G160803 NA non-coding downstream 310937 26347637 ~ 26349594 (+)
G160804 NA non-coding downstream 327404 26364104 ~ 26364360 (+)
G160805 LOC108431224,LOC107714781,LOC107715224 non-coding downstream 332949 26369649 ~ 26369877 (+)
G160806 NA non-coding downstream 333522 26370222 ~ 26370440 (+)
G160306 NA other upstream 1909974 24119129 ~ 24119825 (+)
G160134 NA other upstream 3175718 22853412 ~ 22854081 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other upstream 3877014 22147844 ~ 22152785 (+)
fam174b NA other upstream 4955226 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 5018005 21009302 ~ 21011794 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 287120 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 580562 26617262 ~ 26755313 (+)
G160919 ptx3 other downstream 868544 26905244 ~ 26907627 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other downstream 1072971 27109671 ~ 27119264 (+)
c18h3orf33 NA other downstream 1748196 27784896 ~ 27796504 (+)

Expression


Co-expression Network