LOC103029004


Basic Information

Item Value
gene id LOC103029004
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 17985993 ~ 17994370 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256044.3
AAGTTCATAGAAGCGGTAAAGGAAAACTATGGGCATAAGAAACGTCTACATATTTTTGCCTTGACAATATCCAGCAGATCCAGTTAGACCGGTATTTTCTCAGTATGCAAGAAGTCACCTTTTACCAGACACTCCGTTGACTCAAAGGACCACGATCAAGCTTCTGTCATTCTCtaaattctcttaataaatgGCCTCAGACTGTCCGTTCTCTGCAGAGGATCTACTGTGTCCTGTGTGCTGCGAGGTCTTCACCTTTCCCGTTAAACTGACATGTCAACACAACTTCTGCAAGGTCTGCATTCAGTCATACTGGGAACAGAAGGAATCACGGGAGTGTCCTCTGTGTCGACACACTGAGAGCTCAACAAGACCCCGGATCGACCTGGCCCTAAAGATAGCCTCAGACAACTTCAAAAAGCAGGCCAGTGAGATTGTGTTGAAACCAGAAGAACTCTGCTCCATTCACAACGCGGAGCTGAAGCTTTTCTGTCAGAAAGACGCAAAGTTAATCTGCCTAGTTTGTCACTCGTCCAGGGATCACAAGGACCACGACTGTTGTCCCATAGCAGAGGCAGCCGCTGACAGAAAGAAAGAGATTTCCAGTAAGTATGATTCATTGAGAAAACACCTACATGCTGTTGAAAAGCTGAAGGGAAGTTTGGAGGAACTGGAAGCGCACATAAAGACTCAAGCAGCTCAGACTGAAGCCCAAATAAGAGATGCATTTGAGAAACTCCACAAGTttctgaaggaggaggaggctgCCCGGGTGTTAGTACTACAGGAAGAAACAGCCAGGAAGACTCAGCTGGCCGGGGAGAGGCTACAGGACATCACTCAGACATCTGAAGAACTCGCAGAGATCTTAGCTGAGATTGAACGGTCCTTGAAAACAGATGACATATCATTTTTAAAGGACTGTAAGGAAGCAATAAGAAGGGCATCTTACACACCACACATAACAGAGTATCCCAGAGATGCTCTAATAGACACTGATCAGTACTTGGGATCATTATCGTACACGGTTTGGAGGAGGATGGGGGAAGAAGTGAAACACTGTCCTGTTGTTCTTAATCCCAACACAGCCCATCCCAACCTGATCATCAGCAATGAACTCTCAAGTGTTTGTCATGGAAAGAAGCAGAACCTCCCAGATAACCCTGAACGCTGCACTAGCCGACTGGCAGTGCTGGCTTCTACTGGATTCATATCAGGAAAACACTCCTGGGAAGTAGAGGTTGGGGAAAACCGGGAGTGGTACATAGGAGTGGCACGAGAATCCTTCAAAAGAAAAACCAATGTCTTCCTCAACCCATCAGAGGGTTTCTGGGTCATTGGACTAAACAACGGGGAGACGTATTGGGCTCAGATGGCGCCTCGAACACGTCTTTCACTGAAAAGGAAGCCAATGAGGGTCACTGTGGAACTGGACTATGAGAAGGGGAAGGTTGTGTTTCTGAACTCTGCAGATGGAAGCACCATCCACACATTTAAAGACAAGTTCACAGAGAAGCTGTTTCCTTATTTTTCGCCGGGAATTCATAAGGATGGTCAACACCCACTAAAGATCTGTCCTCTAAAAGTATCCATAATGCTCCATCAGCACGTTGTACATAGCTAAATCTAACAGCATACAAATCATGCAACCATTTAAGATTCATAAAAAATGTCCTGATTTATTATGGAAATGAAAAATTCACTGCATTTCCTTTATTgacattttagttttgtttagttttaccCTCGACAACAGTAATGCTCAAATGTAACTTAGGAGCCAATGATCCTAGTTGAATGCATTTACTAGAATGGGTTTCCATAgaatttggacatatagtgtatttatgAAAATCtgtctttaataaattaataaattatatttgataaatctgatacaaaataaaagttccaATTTAAACCACCAAGTCTTCCTTGGTTAAAAATCaaactgattttaaattaaGATGAAGTATTATTATAGTAGatacatctatctatccatctatcccgCCCCCTAgctcacatatacacatactttTCTGCCCTTTGTATTATCTAATTTTCTCTATTGCTCACTTTAAATTGGctgccacataaaaaaaaacatatccagCACAATGTCTGGAATATTCTTGCAAAATACCAAACCCCATCCAAtatttttggaaataaataaacaatatatattaaatataaatatttcttGGTGACTAAGACATTGTTTGAAAGtgtcaaatataaagtaaaaaagctGCAGTAGACTTTGATCAGCATGATGTAAGTTCTCGTTTGAGGTGGTTGATGGTTTTGTGGGTCCATATGCATGATCCATGTGACCAAATTTGACCATGCCAGTTGATCAGCTTGCCAGTTGACCCCCCCTTATATTTATCATCCCAGGCCTTTTATAAAAGGTACTTCAGTAGGTCATTTTTCTCCACAACTTAAGTGGCCACTAACTAGCTCTCATCTAGGCTTGGCTAATTATAACAAAGGCTTAGTCAGCACCAAATATAACTCACCCTCAGCAACTTTTAAAGAGACTTTGAGTGATAATGACAAGAATTATTACTTTAAGCCATCCTAGGATCATTTTTATTGCTTTCATGTTGAAGGTGTATTAATGCCATAGATAAAGAGTGAACTAGAATATCTCAAAATATCAATCATTTCAGCACATTAATCACTGACATAGCTCTGTGTGGTCAGAGCAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256044.3 True 2718 mRNA 0.41 6 17985993 17994370

Neighbor

gene id symbol gene type direction distance location
kbtbd4 kbtbd4,LOC107708223,LOC107738697,LOC107596956,LOC107672308 coding upstream 17057 17964383 ~ 17968936 (+)
ddb2 ddb2 coding upstream 27559 17949130 ~ 17958434 (+)
LOC103039437 tle3a,LOC108424090,LOC107596960,LOC107672253,LOC108264729 coding upstream 188245 17763691 ~ 17797748 (+)
LOC103024336 NA coding upstream 340744 17625054 ~ 17645249 (+)
morf4l1 morf4l1,LOC107596963,LOC107686360,LOC107738770,LOC107708218,LOC107672187 coding upstream 363865 17610877 ~ 17622128 (+)
agk agk coding downstream 9637 18004007 ~ 18010554 (+)
wee2 wee2 coding downstream 29534 18023904 ~ 18030005 (+)
LOC107197792 LOC107197792 coding downstream 36118 18030488 ~ 18035696 (+)
cftr cftr,LOC107738689,LOC107583749,LOC107596947,LOC107708216 coding downstream 140347 18134717 ~ 18164724 (+)
LOC103028633 NA coding downstream 266795 18261165 ~ 18265803 (+)
G159122 NA non-coding upstream 39310 17942316 ~ 17946683 (+)
G159120 kif23,LOC107686310 non-coding upstream 47905 17926988 ~ 17938088 (+)
G159115 NA non-coding upstream 115525 17870007 ~ 17870468 (+)
G159028 NA non-coding upstream 386639 17596059 ~ 17599354 (+)
G159017 aagab non-coding upstream 529016 17455315 ~ 17456977 (+)
G159129 NA non-coding downstream 1328 17995698 ~ 17996728 (+)
G159182 NA non-coding downstream 113793 18108163 ~ 18109539 (+)
G159184 asz1 non-coding downstream 119635 18114005 ~ 18128429 (+)
G159272 NA non-coding downstream 416942 18411312 ~ 18411936 (+)
LOC111194744 NA non-coding downstream 418991 18413361 ~ 18413950 (+)
rapsn rapsn other upstream 89 17971096 ~ 17985904 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other upstream 613787 17327100 ~ 17372206 (+)
zwilch zwilch other upstream 796742 17177675 ~ 17189251 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other upstream 813765 17101612 ~ 17172228 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other upstream 1187593 16779506 ~ 16798400 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other downstream 531158 18525528 ~ 18576437 (+)
G159666 NA other downstream 2191146 20185516 ~ 20186919 (+)
G159728 NA other downstream 2742228 20736598 ~ 20737049 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other downstream 3014932 21009302 ~ 21011794 (+)
fam174b NA other downstream 3066286 21060656 ~ 21074573 (+)

Expression


Co-expression Network