ranbp10 (ranbp10,LOC107583731,LOC107733562)


Basic Information

Item Value
gene id ranbp10
gene name ranbp10,LOC107583731,LOC107733562
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 18762685 ~ 18813328 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256219.3
GCTTATCCGGGGATATCgctactgctgctgtttctgctcaGTCTCTAGCTCTCCCCCCTTTTCAGCGGATTGACACAACAGGGCAGGAATTAGGAGAAGAAAAACAAGGGGAAATATGGCAGATCTTGGAGCGGGGAGCCTGCTGCCAGGGGATTCTGCCTCCAACGATCAAGAGCAAGAGCTGAACGAGCGTCTGAAGCGGCTGTACCCGGCCGTCAACGAGGAAGAGACCCCGTTACCCCGGTCCTGGAGCCCCAAGGATAAGTACAGCTACATCGGGCTCTCGCAGAACAATCTGCGGGTGCATTACAAAGGCCACGGAAAGAACCACAAAGATGCAGCGTCTGTGAGAGCTACCCATCCGATCCCCGCGGCATGCGGCATCTACTACTTTGAAGTGAAGATCGTTAGTAAAGGCAGGGATGGGTACATGGGGATTGGACTGTCCGCCCAGGGGGTCAACATGAACAGACTACCGgGGTGGGACAAGCACTCCTACGGTTATCACGGTGACGACGGACACTCCTTTTGCTCCTCAGGGACCGGCCAACCTTACGGCCCGACCTTTACAACGGGCGACGTGATTGGCTGCTGTGTGAACCTCATCAACAACACATGCTTCTACACCAAGAACGGACACAGTTTAGGTGTGGCGTTCACAGACCTCCCACCAAACCTGTATCCAACAGTAGGGCTACAGACTCCCGGAGAAATCGTGGACGCTAATTTCGGCCAGCAGCCATTTGTGTTCGACATAGAGGACTATATGAGTGAATGGAGGGCGAAGATCCACGGCATGATAGCCCGCTTCCCCATCGGAGAGAGACTGGGCGAGTGGCAGACAGTGCTGCAGAATATGGTGTCTAGCTACCTGGTGCATCATGGCTACTGCGCTACTGCTATGGCCTTTGCCCGAGCCACAGAGACCATGATCCAAGAGGACCAGACCTCCATAAAGAACAGACAGAGAATACAGAAGCTGGTCTTGGCGGGTCGTGTTGGAGAGGCCATTGAAGCAACACAGCAGCTGTACCCCGGGCTCCTAGAATGCAACCCTAATTTACTCTTCATGTTGAAGTGTCGGCAGTTTGTGGAGATGGTGAATGGTACAGACAGTGAGGTACGATGCTTTAGTGTCCGTTCCAAAACCCAAGACAGTTACCCCGGCTCCCCAAGCCTAAGTCCCCGACACGGAGCTACCAACCCCCACCTGCACAGTACAGGTGCAGACAGTCctacgtgcagtaacggggtgacCCCTTCTACCAAAAACAAGAGCCACGGCAAATATCCTGGAGCAAGCTCcgcctcttcctctccttcatcCTCCCCTTCCTCAGTCAACTACTCTGAATCCAACTCCACCGACTCCACCAAATCCCAGCCACACAGCGCCACCAGCAACCAGGAGACCAGtgacAGTGAGATGGAGATAGAAGCAGAGCACTACAGTAATGGTGTGACGGAGAACTCCTCCACCCGCATCATGAACGGAACATACAAACACCAGGAGATCCTGCAAGGAGATGACAGCAGTGTGGGCAATGGAATAGcagAGGACAGCTGTGGCTCAAGGCAGCTGTGTGGGGGCAACCAGGCAGCCACAGAGCGGATGATCCAGTTCGGCCGTGAGCTGCAGACCCTCAACGAGCAGCTTTCACGCCAGTATGGCAAGAATGCCACGCACAAGAAGATGCTACAGgatgCATTCAGTCTGCTGGCATATTCAGATCCATGGAACTGCCCAGTGGGCCAGCAGCTGGACCCCACGCAGAGAGAGGCCATCTGCTCTGCCCTCAACAGCGCCATATTGGAGTCTCAGAACCTGCCCAAGCAGCCTCCACTCATGCTGGCGCTGGGCCAGGCCACCGAGTGTGTGCAGCTCATGGCCCGAGTGCGCTCCGGCTCCTGTTCCTTCGCCAGAGTCGACAACTTTTTGCACTAGCCCAAGTTCAGACAATGTTCGGGACAGCTAAGAAGAGGACTTTCCAGTTGGTTGCCATGAGGAACACGCTCGTTTGAATTAGTGTGTCGCTTGCCGCTTGCCACAGGCAGTCCGGATGAGGAATGACTAGAAACataaggaggagagagagagagagagagagagagaggcttatttttaatttagtattatCAAATACAAATGTGTGACACTATTTAaagataattaattattattccgTTTATctagtcatttttattttagtttctaTTTTGTCAGTTTGTTGTGCTCATCTTGAACCAGATTtccctttttgtttttatgggTGGATTCAATGCATAGtattctaaacacacaccaTATCGACAGACATCCACAGTAGTAAACTCTTCTTCAAAGAGCGAGAAGTCTCCCTTATTCAGAACTCAGGTATTTGACACGTGTCATTTTAGCATGAGACACTGCAGAATGAGGAACTGCTTTTAGCTAGCAATACTGCGGCTACTTATTAAGGCCTCGTTCACTTTTACTGGCTACTGTACCGCTTAACTACAGTTTTAGGCGTTAGGCAGATACTTTAATATTGTATTAGAGGGAGCTCAGTTTGATCCCTTTACCCgtttgcttttctttcttttttttcagatttagaACTGAAAGTGTGCGGGAGATAAGCGAGAAGGTGCATTGATTGCTTCAGTGTGTCTCACTTTGAAGCTTGTAGTTAAAGCTCAGGCACCAGCACCAGTTTATTAGATTCAGAACACACAGTTGCATCCAAGTCCAGCTGGAACCAAGTCTATTTTTACAAACTCTCTCCAAAAAGACTTCTATTTTAACTCTGATCTTTCTAGGGTACAGTATAGATATAATGTAACCCCcctgcttttatttaatttaattttcttgGTTCAGAATATCAGAATTGAGCTGTGGGTGTCTAATTTTGTGTGGCTGTAATGAATAAAAACCGTCAAGTTTTGGTTAAAGGAAACCAAGGTTAGCAGTTTCATTCATTTCTGACTTCATCATTCAGGCTTAGAAGCTGACTTCCTTCACTAAttcatatgttttgtttttttgtgttcacTTGTATAGCGTTTATGGCAAGGTTTCCCCCATTAATGATTGATGAATACTGACAACATCTATGTTGAtattgttttaagttgtttaagACACAGTCATTACATTATGGATTGGCGAGTCTGAATTTGCCCCTTGTTGCATGTGAGATGATAATTagactgcaaaaaaaagaaagcgatCAAAAGCTCTTATATTTGGCAAGATATTTGGCAACATTTTGATCCTTGTGGTTTCTTGTCTATATCTTTGCCCCTATTGTCCCTTTACATCTTTTCTTCAGTtttggcttctttttttttcttccagttAGTTGTACTCCATCTTCGTTCTTCTTGCAGATTCCCTTTTTTATTGCCCCTTTTTCCATCATAAGCTGCGCCATTGTCACTTTGACTCTACACTCAGCACTGACTCAGTCACTGTAGGATATGTGGCTAAGGCCTGATTCTTCCTCTCCTCTTGCTCTTTTAGGGGTTGCTCTCCAGTTGGATCAGTGTCATaatctctcttattttttctaggATACTCTCTCATTTCAGTGCGTCCTCGGCCTGTGTTTGTGGGGCGGGGCATATATCTCACATCCATGTGTTTAACCCAGTATTTTGCCCAGTCAGCCAGCGAGTGGTGCTCCACTGTGTTGTTGAATGTAGCGTAGCCGTTTACTCCGCTTATTACTCAAGTTTCGCTGCTGGCCACCATGAGATTGTTTGTTACATCCCTGGTTTTTGCACCTACTTTTGGACATATTGCATTGTATATTTCAGTTATACCTCACTCACATTGCGAACAACCCAGTCTAGCTTGTTCGTGTTGCAGGAAGCAGTAGTAAATAGGGACGCAAGTAGAGGCTGTGCAGTAGCTGAACCGGGATGACTTGTTTACCAGGCCAGGCTTGGGGTCTTGGGCTGTTGGAGGGAATGGTCTAGAAGGTTATGTACAAACTTCTCAAGGTAATATATCATCTTTACAATCAACAGGAGCTAAAAGGCAAAAAACGCAAAAAGGCAATCtgttcaggaaaaaaaacagagtaaaagTACACTTCTGACCACATGGTTCTGGCAACATCTATGGCTACTGCTTGGCTACTGCTTTGTACACACTCTTATACCCAGTAATCCATGTTCAAGTCGAGATATGTTTAATCATTTCTTATTCTGGTAGATGAATCGATGAAGATAACTGAGTGGTGTTACCCTGTTGCATGGAGACATCATGTGTAACTCTTAAAAGAGCCATAATCGTTTAATATCGACACACAATGCCAGCTCGAACTGAAAGCTCGTACTGTTACTGATTTGTAAGTAGTAGGAGCTTGTTTTAGGATTGTTTTTTAatggcaaaagaaaaaaaaaaaacagtgtcatGTTTTTGGGAATCAGCAAAGGCTAACCACCCACAAACTGAAAATTGCCATTGGAAAGTAATCCATCATCACAGAACAGAATCTTGAATAGGGACCTACAGTATACAATGAAGGGAAGAAATTAGCTGAAAGTCCTCCCAGGACACATTTGTCCCCTCTTCGCTTGTCCACGCAGTGCCATTTTGTGCCTCGGATGACGGAAGCAGGACAAATAGAGCTAAAGCTGAATACAACAAGCTGtgcacaatttaattattttatgttttcaaattttatttgagttttgaTTTTAGCCATTGTGAAATGATTTACCCTCTACTTAGCATGAAccttttaaaaacctttaaaacaacataaaaaaagaaaatgataatggagaaaaaaaaaacaaaacaaaaaactatgTACTGGAAACATGTTAAAGAAATATTGTACTCGTTTAATTTTGacagaattatttttattaaaatacacatcCATGAGCATA

Function

symbol description
ranbp10 Predicted to be involved in cell surface receptor signaling pathway and cytoskeleton organization. Predicted to be active in cytoplasm. Orthologous to human RANBP10 (RAN binding protein 10).

NR:

description
ran-binding protein 10 isoform X1

GO:      GO:0008536

KEGG:

id description
K23334 RANBP9_10, RANBPM; Ran-binding protein 9/10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256219.3 True 4890 mRNA 0.45 15 18762685 18813328

Neighbor

gene id symbol gene type direction distance location
LOC111194773 LOC106934266,LOC108233135 coding upstream 261866 18496094 ~ 18500819 (+)
chka chka,LOC108424340,LOC107738676,LOC107726368,LOC107694945,LOC107583738 coding upstream 271159 18472936 ~ 18491526 (+)
kmt5b kmt5b,LOC107738677,LOC107694947,LOC107596936,LOC107583742,LOC108264420,LOC107726382,LOC107672243 coding upstream 294406 18462098 ~ 18468279 (+)
arpin arpin coding upstream 327570 18415527 ~ 18435115 (+)
LOC103028633 NA coding upstream 496882 18261165 ~ 18265803 (+)
ripor1 fam65a coding downstream 64807 18878135 ~ 18980992 (+)
ctcf ctcf,LOC107726208,LOC107583725,LOC107596920 coding downstream 170274 18983602 ~ 18991711 (+)
carmil2 carmil2,LOC107694932,LOC107733559 coding downstream 183725 18997053 ~ 19065156 (+)
cfdp1 LOC105419833 coding downstream 262754 19076082 ~ 19111677 (+)
bcar1 bcar1,LOC107596915,LOC107583722,LOC107701029 coding downstream 309591 19122919 ~ 19236859 (+)
G159389 nutf2 non-coding upstream 10531 18738284 ~ 18752154 (+)
G159388 NA non-coding upstream 26012 18736402 ~ 18736673 (+)
G159365 edc4 non-coding upstream 27871 18732483 ~ 18734814 (+)
G159363 NA non-coding upstream 34648 18727015 ~ 18728037 (+)
G159350 LOC108438999,LOC107726468,LOC107694939,LOC107733575,LOC107596927 non-coding upstream 105283 18652757 ~ 18657402 (+)
G159480 NA non-coding downstream 445968 19259296 ~ 19262326 (+)
G159579 NA non-coding downstream 750421 19563749 ~ 19563966 (+)
G159583 NA non-coding downstream 772080 19585408 ~ 19585837 (+)
G159585 NA non-coding downstream 773120 19586448 ~ 19586972 (+)
LOC103038177 NA non-coding downstream 794088 19607416 ~ 19665139 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other upstream 186248 18525528 ~ 18576437 (+)
rapsn rapsn other upstream 776781 17971096 ~ 17985904 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other upstream 1390479 17327100 ~ 17372206 (+)
zwilch zwilch other upstream 1573434 17177675 ~ 17189251 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other upstream 1590457 17101612 ~ 17172228 (+)
G159666 NA other downstream 1372188 20185516 ~ 20186919 (+)
G159728 NA other downstream 1923270 20736598 ~ 20737049 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other downstream 2195974 21009302 ~ 21011794 (+)
fam174b NA other downstream 2247328 21060656 ~ 21074573 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other downstream 3334516 22147844 ~ 22152785 (+)

Expression


Co-expression Network