chka (chka,LOC108424340,LOC107738676,LOC107726368,LOC107694945,LOC107583738)


Basic Information

Item Value
gene id chka
gene name chka,LOC108424340,LOC107738676,LOC107726368,LOC107694945,LOC107583738
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 18472936 ~ 18491526 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256233.3
GCTGTAGCCAATCGCGCGGGACAACAAACGCCATACACGGTGTATCCATCCGCACGCAGGCAGGGCGAGCAGCGAGGCGCACTAGTTCATTGTAGCTAACGGTACTGCGTACGCGCGTCTGTCCTCCCCGCTCCCCACAATCAGAGCCGCTCCTGcagcacacacaacacagtCACCTGAGTTCCTCAGTAAAGGCAGACATGAAGACCAAATTCATCAATGGGGTCTCCTCGTCCCCCTCCATGTCTCTGGGTTTACTAGTGACAGAAAACGCGCTCCAGGTGCAGCCGGACACGGAGCCCGACTGTAAAGACATACGGCCAGACGAGCCCGACCAGCAGACCAAGCATAAGGCGTTCATGTGGTGCAGAGAGTTCCTCCACGGAGCCTGGAAGACTGTTGAAGAAAATGATTTCCAGATCACAGTCATCAGGGGGGGTCTCAGTAACAAGCTGTTTCTCTGCGCACTCCCAGAAGAGCAGCAGAGTGTTGGGGATGAGCCGAGGAACGTGCTACTGCGCCTTTACGGAGCCATTCTGCAGATGTCCTGTAATAAAGGGGAATCCAGACAGTCAAACAAAGACAATCACTTTCAAGGAGCTGAAGCTATGATCCTGGAGAGTGTGATGTTTGCCATCCTGGCCGAGAGGCAGCTGGGCCCTAAGCTCTATGGCATCTTCCCTCAGGggagactggagcagtttgTGCCAAGCCGGAAGCTTAATACGGATGAGCTGAAAATTCCCAGCATATCTTCTGAGATTGCTGAGAAAATTGCCAAGTTTCACAGGATGAGAATGCCTTTCAACAAAGAGCCCAAATGGCTGTTTGGCACCATGGAAAAATACATGAGTCAGGTGCAGAGCCTGGCCTTCACCAGAGAGACACACCTGCGCAAGTTCTCCCGGCTTATGAGTTACAATCTGCGTCAGGAGATGGAGAGCCTCAGGTGTCTACTGGAATCCACACAATCTCCTGTTGTTTTCTGCCACAATGACTTACAAGAAGGAAACATCTTGCTTTTGAGTGGCCGGGAGAACATGGACAAGCAGAAACTCATGTTGATTGACTTTGAGTACAGCAGCTACAACTACAGAGGATTTGACATCGGAAACTTCTTCTGTGAGTGGACCTATGACTACACCTGCGACGTGTCTCCATACTTCAAAACAACCACCAAGAATTACCCCACCAAAGCTCAGCAGATGCATTTCTTCAAAAGCTACTTGTTGGAGTATGACCCAGGAATAGCGAACCTGGGTGAGGAAGATCAGCTGAAACTCAGAGAGGACATGTTGGTGGAAGTTAACAGGTTTGCCCTTGCCTCCCACTTCTTCTGGGGTCTGTGGTCCATAATCCAGGCGCGAATATCCACCATCGAGTTTGGCTATCTGGACTATGCCATGGCCAGGTTTGACTCGTACTTTGAGCTGAAGAAGGAGCTGGGCATTTGAATTAATGCTCTAGGGACACAGAACAGAGGGACAGCTGCTGCTCTTAAGTCTTAAGCTGAAAGGAGCAAAGTGGAGACCAATGACCTGGCTTTCACTAGAAAGAGGGGTGCTTTGCTACTGTAATGGCTACAAGGTGCTGCATGGACCAAAACCAGTGCCACTTACCTTCACTCTGCATCAGGCCCGATGTATTGAATAGTGTGCCATGCCTTGCTTCTCAGTGTTAACCATTTTGAGCTCCAATTTTTTTCATTCACACCTGCCTGGTTGTAAAAGCTTTAGGGCAGACAAAAGATAGATGATAATAATGTCAGCAAAAcaacatgaaaaaatataaatccaGTATAAATACTTGGCTGCGCAGATAGACAAACATATCATATTATACTGCACTAACTCTAACTAGAAGCTAAGCTGCACCAGTCTGTGGTGGAAAAGTACTCGACCCTGAAGTGCCACGTGTGgcatttttattgcagtagGCAATACTCCGTTCTGTTATATTTACAGCCAATGGTAGGAAATGTGAATGAATGAGGTTCAGATACATGGACCTCAAGCTAAAAAGCGGTACAACAGATCAAACTCTGTTGGCACTGTAGATTTAACGATTTCCAGTGTTGTGGGATATTTTTACACTCATCCAACTTTTTATGTGAAGTTTTACAATCCTTAATATTGTGGCTTtacctcttctttttctctactTGAACAACCATTAgctgtttattttctttctgtggCAGTAGGTCAATAGAGCAATAGAGTGAAAAACAGATATCCTGTGGGACTGGGCCATCTGCGTCTGAGTGTGATTTGTTATTACATGAGAAAAACACTGAGTCGTAACAGCTAGTTCTATTAGCTTTACTGGCTCATCCAAATTGTGCATACAGTGGTAACTGTCAAATTAAATGTCGTGTCACTTAATGACAATCTTTCCcttttgaaatcatttttttatataccagcttgtatatttttactttttagactGCAAGATCATTTTGTAGAATGTTTCCTTTCAGTGTGTATTACCTTGTAATAACAGTTAAAACTGGACACTACTTctctgtgattattttttttttaaacctggtATGTATGTACTAAACTGTGAtaaatatttcactttttttttacaatctaaGCTATACTATATTTTTGAGTATCTTGTTATAATATTTACTTGCAAGTGCTGAGACAGTGTATTAATTCTGCTAACATTACTGTGAAGGTCACTCTTTGTACCGGTCCCTAAAGAAAGTACTGGTCGGTCTATAAAGAACTTTCTCTTTCCTTGAATGGAAgatgtgttttttcttaataaGAAAGTTGCGCTCTTTGAAAGAATTGAAATCAATTTTCTTTATAATCACCAGTGTAATATCTAAGTATTAATTCCACATATTTAAATCTCTTTaaacagtaatattaattctGTCAGTGTTTTGGTATCTACAACCAGCTAGAGTTGGGTGAATGTAATGAAGCATAATGTATAAGTCATATCCTATAATGTCAGACATGAACCTGTCCCAACTCCCCAGGCCGTGTAAGGATATGTGTGTACAGTTCTATGGGGTGATTTCAAATCATTCTACAGATTGCTCTCTGTGTATTGTAATGTAGTTATGCtatacttctttaaaaagggAGAAGCTTTTTCATTCCTTTGCAAACTTCATCAGTGTTCTGTAATTATGCAGACTGTGCTTATAAACGGTAAataaaattatgcaaaaaatgataaaatg
>XM_015607592.2
GCTGTAGCCAATCGCGCGGGACAACAAACGCCATACACGGTGTATCCATCCGCACGCAGGCAGGGCGAGCAGCGAGGCGCACTAGTTCATTGTAGCTAACGGTACTGCGTACGCGCGTCTGTCCTCCCCGCTCCCCACAATCAGAGCCGCTCCTGcagcacacacaacacagtCACCTGAGTTCCTCAGTAAAGGCAGACATGAAGACCAAATTCATCAATGGGGTCTCCTCGTCCCCCTCCATGTCTCTGGGTTTACTAGTGACAGAAAACGCGCTCCAGGTGCAGCCGGACACGGAGCCCGACTGTAAAGACATACGGCCAGACGAGCCCGACCAGCAGACCAAGCATAAGGCGTTCATGTGGTGCAGAGAGTTCCTCCACGGAGCCTGGAAGACTGTTGAAGAAAATGATTTCCAGATCACAGTCATCAGGGGGGGTCTCAGTAACAAGCTGTTTCTCTGCGCACTCCCAGAAGAGCAGCAGAGTGTTGGGGATGAGCCGAGGAACGTGCTACTGCGCCTTTACGGAGCCATTCTGCAGGGAGCTGAAGCTATGATCCTGGAGAGTGTGATGTTTGCCATCCTGGCCGAGAGGCAGCTGGGCCCTAAGCTCTATGGCATCTTCCCTCAGGggagactggagcagtttgTGCCAAGCCGGAAGCTTAATACGGATGAGCTGAAAATTCCCAGCATATCTTCTGAGATTGCTGAGAAAATTGCCAAGTTTCACAGGATGAGAATGCCTTTCAACAAAGAGCCCAAATGGCTGTTTGGCACCATGGAAAAATACATGAGTCAGGTGCAGAGCCTGGCCTTCACCAGAGAGACACACCTGCGCAAGTTCTCCCGGCTTATGAGTTACAATCTGCGTCAGGAGATGGAGAGCCTCAGGTGTCTACTGGAATCCACACAATCTCCTGTTGTTTTCTGCCACAATGACTTACAAGAAGGAAACATCTTGCTTTTGAGTGGCCGGGAGAACATGGACAAGCAGAAACTCATGTTGATTGACTTTGAGTACAGCAGCTACAACTACAGAGGATTTGACATCGGAAACTTCTTCTGTGAGTGGACCTATGACTACACCTGCGACGTGTCTCCATACTTCAAAACAACCACCAAGAATTACCCCACCAAAGCTCAGCAGATGCATTTCTTCAAAAGCTACTTGTTGGAGTATGACCCAGGAATAGCGAACCTGGGTGAGGAAGATCAGCTGAAACTCAGAGAGGACATGTTGGTGGAAGTTAACAGGTTTGCCCTTGCCTCCCACTTCTTCTGGGGTCTGTGGTCCATAATCCAGGCGCGAATATCCACCATCGAGTTTGGCTATCTGGACTATGCCATGGCCAGGTTTGACTCGTACTTTGAGCTGAAGAAGGAGCTGGGCATTTGAATTAATGCTCTAGGGACACAGAACAGAGGGACAGCTGCTGCTCTTAAGTCTTAAGCTGAAAGGAGCAAAGTGGAGACCAATGACCTGGCTTTCACTAGAAAGAGGGGTGCTTTGCTACTGTAATGGCTACAAGGTGCTGCATGGACCAAAACCAGTGCCACTTACCTTCACTCTGCATCAGGCCCGATGTATTGAATAGTGTGCCATGCCTTGCTTCTCAGTGTTAACCATTTTGAGCTCCAATTTTTTTCATTCACACCTGCCTGGTTGTAAAAGCTTTAGGGCAGACAAAAGATAGATGATAATAATGTCAGCAAAAcaacatgaaaaaatataaatccaGTATAAATACTTGGCTGCGCAGATAGACAAACATATCATATTATACTGCACTAACTCTAACTAGAAGCTAAGCTGCACCAGTCTGTGGTGGAAAAGTACTCGACCCTGAAGTGCCACGTGTGgcatttttattgcagtagGCAATACTCCGTTCTGTTATATTTACAGCCAATGGTAGGAAATGTGAATGAATGAGGTTCAGATACATGGACCTCAAGCTAAAAAGCGGTACAACAGATCAAACTCTGTTGGCACTGTAGATTTAACGATTTCCAGTGTTGTGGGATATTTTTACACTCATCCAACTTTTTATGTGAAGTTTTACAATCCTTAATATTGTGGCTTtacctcttctttttctctactTGAACAACCATTAgctgtttattttctttctgtggCAGTAGGTCAATAGAGCAATAGAGTGAAAAACAGATATCCTGTGGGACTGGGCCATCTGCGTCTGAGTGTGATTTGTTATTACATGAGAAAAACACTGAGTCGTAACAGCTAGTTCTATTAGCTTTACTGGCTCATCCAAATTGTGCATACAGTGGTAACTGTCAAATTAAATGTCGTGTCACTTAATGACAATCTTTCCcttttgaaatcatttttttatataccagcttgtatatttttactttttagactGCAAGATCATTTTGTAGAATGTTTCCTTTCAGTGTGTATTACCTTGTAATAACAGTTAAAACTGGACACTACTTctctgtgattattttttttttaaacctggtATGTATGTACTAAACTGTGAtaaatatttcactttttttttacaatctaaGCTATACTATATTTTTGAGTATCTTGTTATAATATTTACTTGCAAGTGCTGAGACAGTGTATTAATTCTGCTAACATTACTGTGAAGGTCACTCTTTGTACCGGTCCCTAAAGAAAGTACTGGTCGGTCTATAAAGAACTTTCTCTTTCCTTGAATGGAAgatgtgttttttcttaataaGAAAGTTGCGCTCTTTGAAAGAATTGAAATCAATTTTCTTTATAATCACCAGTGTAATATCTAAGTATTAATTCCACATATTTAAATCTCTTTaaacagtaatattaattctGTCAGTGTTTTGGTATCTACAACCAGCTAGAGTTGGGTGAATGTAATGAAGCATAATGTATAAGTCATATCCTATAATGTCAGACATGAACCTGTCCCAACTCCCCAGGCCGTGTAAGGATATGTGTGTACAGTTCTATGGGGTGATTTCAAATCATTCTACAGATTGCTCTCTGTGTATTGTAATGTAGTTATGCtatacttctttaaaaagggAGAAGCTTTTTCATTCCTTTGCAAACTTCATCAGTGTTCTGTAATTATGCAGACTGTGCTTATAAACGGTAAataaaattatgcaaaaaatgataaaatg

Function

symbol description
chka Is expressed in swim bladder. Orthologous to human CHKA (choline kinase alpha).

NR:

description
choline kinase alpha-like isoform X1

GO:

id name namespace
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function

KEGG:

id description
K14156 CHK; choline/ethanolamine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256233.3 True 3211 mRNA 0.43 12 18472936 18491526
XM_015607592.2 False 3157 mRNA 0.43 11 18472936 18491526

Neighbor

gene id symbol gene type direction distance location
kmt5b kmt5b,LOC107738677,LOC107694947,LOC107596936,LOC107583742,LOC108264420,LOC107726382,LOC107672243 coding upstream 4657 18462098 ~ 18468279 (+)
arpin arpin coding upstream 37821 18415527 ~ 18435115 (+)
LOC103028633 NA coding upstream 207133 18261165 ~ 18265803 (+)
cftr cftr,LOC107738689,LOC107583749,LOC107596947,LOC107708216 coding upstream 308212 18134717 ~ 18164724 (+)
LOC107197792 LOC107197792 coding upstream 437240 18030488 ~ 18035696 (+)
LOC111194773 LOC106934266,LOC108233135 coding downstream 4568 18496094 ~ 18500819 (+)
ranbp10 ranbp10,LOC107583731,LOC107733562 coding downstream 271159 18762685 ~ 18813328 (+)
ripor1 fam65a coding downstream 386609 18878135 ~ 18980992 (+)
ctcf ctcf,LOC107726208,LOC107583725,LOC107596920 coding downstream 492076 18983602 ~ 18991711 (+)
carmil2 carmil2,LOC107694932,LOC107733559 coding downstream 505527 18997053 ~ 19065156 (+)
G159274 NA non-coding upstream 44510 18428155 ~ 18428426 (+)
LOC111194744 NA non-coding upstream 58986 18413361 ~ 18413950 (+)
G159272 NA non-coding upstream 61000 18411312 ~ 18411936 (+)
G159184 asz1 non-coding upstream 344507 18114005 ~ 18128429 (+)
G159182 NA non-coding upstream 363397 18108163 ~ 18109539 (+)
G159298 NA non-coding downstream 16885 18508411 ~ 18508695 (+)
G159344 NA non-coding downstream 121638 18613164 ~ 18615494 (+)
G159347 NA non-coding downstream 138944 18630470 ~ 18630853 (+)
G159349 NA non-coding downstream 160924 18652450 ~ 18652676 (+)
G159350 LOC108438999,LOC107726468,LOC107694939,LOC107733575,LOC107596927 non-coding downstream 161231 18652757 ~ 18657402 (+)
rapsn rapsn other upstream 487032 17971096 ~ 17985904 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other upstream 1100730 17327100 ~ 17372206 (+)
zwilch zwilch other upstream 1283685 17177675 ~ 17189251 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other upstream 1300708 17101612 ~ 17172228 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other upstream 1674536 16779506 ~ 16798400 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other downstream 34002 18525528 ~ 18576437 (+)
G159666 NA other downstream 1693990 20185516 ~ 20186919 (+)
G159728 NA other downstream 2245072 20736598 ~ 20737049 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other downstream 2517776 21009302 ~ 21011794 (+)
fam174b NA other downstream 2569130 21060656 ~ 21074573 (+)

Expression


Co-expression Network