arpin (arpin)


Basic Information

Item Value
gene id arpin
gene name arpin
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 18415527 ~ 18435115 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256237.3
cagcagcagcagcaggaggctGAGTTTCAGAAACTGCTGGGTTTCGCTGATCTATAGATCATGGGGTGTGAGCGTTTAGAGAGTCCGCATGCAGTTACAGTCTAACACTGCGCTGCCCGCTCACTTCCTGATCACAAACAACAACGAGGAAgtgggaaaaacacaggaaaagTTGGAGTAAATCAGAATGAGCCGGATTTATGATAACACTGCGCTTCAGAATAAACCGGTTCATAATGAGAAACTCTCTACAGTCTGGGACCCGGCTTTCTATCAGAGAGGCGCTGGGGTGATTCTGGAGGGGACTTTTATTGATGTGTCTCGTCATGCAATCACAGACACCAACAACAGAAAGGAGCGCTATTATATTCTGTATGTGAAGCCTAGCCGAATCCACTGCAGAAAGTATGATGCCAAAGGAAATGAGATCGAGCCCAATTTCAGTGAGACCAAGAAGGTCAACACAGGTTATCTTATGTCATCTTACAAACAGGAGGCCAAAGGTGAGTCAGATAGACTTACTGAAGACCAGCTGAAGGACATTGTGAACAAGAAGGAGCTAATTACAGTAACAGAGAAGCACTGCCCCAAACAAGCATTTGCCTTCTGGATACTGGAGACTGAGATGGAGAAGGTGGAGCTGGAAAGTGGCCAAGAAATCCGTCTAAAAACCAAGGGAGATGGCCCCTTTATCTTCTCCTTTGCCAAGGTGGATGCCGGAACAGTGACAAAGTGCAATTTTGCTGGAGATGAGCAGACTGGGGCATCGTGGACTGACAAAATAATGGCCAACAAAGCAGATACACTGAGTGATTCAAAACCGGCTGAGCAGGGCCAAGGAGCTGATGATGAAGAGTGGGATGACTGATCAGTACACAGAAGAAGACAAATGTATGAATACACTTTACATATGAATATTGACACTTTACGTATGAAGTTGGAATTACATAAACCTTTGATATGTGCCATAATAAAAgccatttttttacaaaaa
>XM_007256240.3
GAGCGCCTCTATGAAGTGGAGGCTCCTGGGGACTGGAGTCAGAGACGCAACGTGTGGTTGAGCATACGACTCCAGCTCCACCCAACACAGAGTGCAAGTTCAGATGAAAGTCCACACAGTTCTCAAGTTATGGAAAGAAAGCTCATACGCCCTGAGTCAAAGAGGCGCTGGGGTGATTCTGGAGGGGACTTTTATTGATGTGTCTCGTCATGCAATCACAGACACCAACAACAGAAAGGAGCGCTATTATATTCTGTATGTGAAGCCTAGCCGAATCCACTGCAGAAAGTATGATGCCAAAGGAAATGAGATCGAGCCCAATTTCAGTGAGACCAAGAAGGTCAACACAGGTTATCTTATGTCATCTTACAAACAGGAGGCCAAAGGTGAGTCAGATAGACTTACTGAAGACCAGCTGAAGGACATTGTGAACAAGAAGGAGCTAATTACAGTAACAGAGAAGCACTGCCCCAAACAAGCATTTGCCTTCTGGATACTGGAGACTGAGATGGAGAAGGTGGAGCTGGAAAGTGGCCAAGAAATCCGTCTAAAAACCAAGGGAGATGGCCCCTTTATCTTCTCCTTTGCCAAGGTGGATGCCGGAACAGTGACAAAGTGCAATTTTGCTGGAGATGAGCAGACTGGGGCATCGTGGACTGACAAAATAATGGCCAACAAAGCAGATACACTGAGTGATTCAAAACCGGCTGAGCAGGGCCAAGGAGCTGATGATGAAGAGTGGGATGACTGATCAGTACACAGAAGAAGACAAATGTATGAATACACTTTACATATGAATATTGACACTTTACGTATGAAGTTGGAATTACATAAACCTTTGATATGTGCCATAATAAAAgccatttttttacaaaaa
>XM_015607578.2
catagtgatgGTGCTATTGTTCTTtcagctcacttacatttgtgaatgtgaaccgtcaataTAGCCAAAACCGTCCGATCTGTTAAAAAAATCCGacttgagcaatgtggcttgtaatgtgaacgtagccatagtcacccagacctgaaATGGAATCCCAATCTCCCACATTGTAGCTCACTgacaggcagtggtgttattcactgcaccacaccaaccaccgtTTCACTAAAGAGTGAAACGGTGTGCAGTGCAGTGCGGGTCACCGTGTTTCCTTATCCAGCAGATAGCGCTGTTTCACCAGCAGAAAAACACCAAAGGTCATCCAGCATTCAAAATGGAATCCAGCCCAAACCTGTCTGTCACACAGAAAGGGAGCCGCTACCCTGTGGACCTTCCCTGTCAGGACTATGATGAACTGAAACCTGACTCTGGTAAATACCTGTCAGACATGCAGACCTTCAACCTGCCCAGTGGAAATAAGgtgAAAGTAACTCAAGAGAATATAGGCCAGCTAAATCTCTTTGTTGATGATGATCCACCTCACTCCCTTCTGGCTCTTCATGCACCAGCTGATGAAACCCAAGTGGTTGCAATATACTTGCACAGAAAATGGTGGCCCATTTATGAAGTTTTAAAGACATCAAGCAAATCCAGATGTGGACTTTTGCTTGTGGAGTCAGTGATGGAGAGAGTTATACTCTTCCTGCTCAGTCAGATCATATTTGGAATACTGGAAAGGCCTCTGGGAGAAAACATGTACTTCTCCACTCATCCCATGCGGGAATATGCAAAAATCCTCTGGCAAGATGGAGAAGCAGTTGGcttttacaccattaaaaagAAAGGTAGCCTGTGCGATGGCTGCACTGGTCAAAGTTACCATCTCCCTGTGTTGGACACAGTGTATGTGCGCAGTCGCTGGAGGAAGAATGGACTAGGTTTACAGATGCTCCAGGATTTTTGCAGCTCCATGCCGAAAGAAAGTGCAATCGGAATAAGCTACCCTATATCTGCCAGCATGTTTGGAGTATGCAAGAAGTACCTAGAGACCCACCAGGATCAGAGGGAGCGCCTCTATGAAGTGGAGGCTCCTGGGGACTGGAGTCAGAGACGCAACGTGTGGTTGAGCATACGACTCCAGCTCCACCCAACACAGAGTGCAAGTTCAGATGAAAGTCCACACAGTTCTCAAGTTATGGAAAGAAAGCTCATACGCCCTGAGTCAAAGGATCAGGAGGGCGTGTCATACTGTGATAGATCTGTGGTCACCCCCACTGGGGTAAGAAAGGCCAGAAGAAGCTGTATAGAGAAGATACCATTTGACAAACCTGGTACAACGCCAAGCGTAAAAAAAAGTCAAGACGTTCATATAAATTGTGATGCATAAAATGGGTCTGGATGTGGAAGGTTTCAGAGCAGTCTGTACTTggcatttaagtattttagacTGTCAAATTAGCCAACAGCTAGGAAAGAAGCAGTAGTACAatattcatgaaaaaaacaacaacaatgcaCTAAGAAGGAGAACATAATTACACATAAAAAACCACACCTTGCACACTCTTAGACTGCCAAAGCTGGCCTCCACACTGATCTCAAAAATGCTTGTTTGACTATAAATTTGGTGACCAGATCAGGTCAAGGACGTGTTGCAATCAGGCGAAGACATTCCTCAGAAAACAGTATGTGCAGTATATGGGTGAGTATTATCCTGTTGAAAAAAGTCAGTTTGAAGCCCTGCCACGAAAGACAACATGTCcgcaggatgtcctgcacatataGCTGAGCCAGTGTCGTATGTGATGGCTTGCCAAAttatcacaccagcagttggcTGCACAGCCAAGGCAGGATTGAAGCGATCACTATGAGGCCTTAATACTCAAACCTATTGCTGGAGCTGGTTCCAGTTCAGAGCTGTCCAGTTTTTTATTCACGACACCACTGCAAACAAAAGCGACAATTGCTGATTTGTATCTTAGGGCATTTTTTTGTAGTGATGCTTTTCTCaacattttctaaaaatgttGGTCCAGAAGTGGTTTGGAAGGTTGAAAACTAAAGATCATCATTAAAATGCCTGAGAAATTGCAAATGTAGTGTTAAAGTGTGGGTTAAGACCAAACTGAATTAGAACTGCATTAGAGCAACACCTGTGTTGGAGAGGACATTGCTCACCTTTACTTACTTTCTTAAGGAATTTTGAAGGGTAACTCTACTACAgggatttatttagattttacacaaaatatgaAACAATTTATGTACACTTGCTCATTATTGTTTCTTGTGAAAtcaagaatattaaaaagagtttgtcACAGTA
>XM_022679692.1
catagtgatgGTGCTATTGTTCTTtcagctcacttacatttgtgaatgtgaaccgtcaataTAGCCAAAACCGTCCGATCTGTTAAAAAAATCCGacttgagcaatgtggcttgtaatgtgaacgtagccatagtcacccagacctgaaATGGAATCCCAATCTCCCACATTGTAGCTCACTgacaggcagtggtgttattcactgcaccacaccaaccaccgtTTCACTAAAGAGTGAAACGGTGTGCAGTGCAGTGCGGGTCACCGTGTTTCCTTATCCAGCAGATAGCGCTGTTTCACCAGCAGAAAAACACCAAAGGTCATCCAGCATTCAAAATGGAATCCAGCCCAAACCTGTCTGTCACACAGAAAGGGAGCCGCTACCCTGTGGACCTTCCCTGTCAGGACTATGATGAACTGAAACCTGACTCTGGTAAATACCTGTCAGACATGCAGACCTTCAACCTGCCCAGTGGAAATAAGgtgAAAGTAACTCAAGAGAATATAGGCCAGCTAAATCTCTTTGTTGATGATGATCCACCTCACTCCCTTCTGGCTCTTCATGCACCAGCTGATGAAACCCAAGTGGTTGCAATATACTTGCACAGAAAATGGTGGCCCATTTATGAAGTTTTAAAGACATCAAGCAAATCCAGATGTGGACTTTTGCTTGTGGAGTCAGTGATGGAGAGAGTTATACTCTTCCTGCTCAGTCAGATCATATTTGGAATACTGGAAAGGCCTCTGGGAGAAAACATGTACTTCTCCACTCATCCCATGCGGGAATATGCAAAAATCCTCTGGCAAGATGGAGAAGCAGTTGGcttttacaccattaaaaagAAAGGTAGCCTGTGCGATGGCTGCACTGGTCAAAGTTACCATCTCCCTGTGTTGGACACAGTGTATGTGCGCAGTCGCTGGAGGAAGAATGGACTAGGTTTACAGATGCTCCAGGATTTTTGCAGCTCCATGCCGAAAGAAAGTGCAATCGGAATAAGCTACCCTATATCTGCCAGCATGTTTGGAGTATGCAAGAAGTACCTAGAGACCCACCAGGATCAGAGGGAGCGCCTCTATGAAGTGGAGGCTCCTGGGGACTGGAGTCAGAGACGCAACGTGTGGTTGAGCATACGACTCCAGCTCCACCCAACACAGAGTGCAAGTTCAGATGAAAGTCCACACAGTTCTCAAGTTATGGAAAGAAAGCTCATACGCCCTGAGTCAAAGGTTTTCAGAGAGCTGGaagacaacagcagcagcagcaggaggctGAGTTTCAGAAACTGCTGGGTTTCGCTGATCTATAGATCATGGGGTGTGAGCGTTTAGAGAGTCCGCATGCAGTTACAGTCTAACACTGCGCTGCCCGCTCACTTCCTGATCACAAACAACAACGAGGAAgtgggaaaaacacaggaaaagTTGGAGTAAATCAGAATGAGCCGGATTTATGATAACACTGCGCTTCAGAATAAACCGGTTCATAATGAGAAACTCTCTACAGTCTGGGACCCGGCTTTCTATCAGAGAGGCGCTGGGGTGATTCTGGAGGGGACTTTTATTGATGTGTCTCGTCATGCAATCACAGACACCAACAACAGAAAGGAGCGCTATTATATTCTGTATGTGAAGCCTAGCCGAATCCACTGCAGAAAGTATGATGCCAAAGGAAATGAGATCGAGCCCAATTTCAGTGAGACCAAGAAGGTCAACACAGGTTATCTTATGTCATCTTACAAACAGGAGGCCAAAGGTGAGTCAGATAGACTTACTGAAGACCAGCTGAAGGACATTGTGAACAAGAAGGAGCTAATTACAGTAACAGAGAAGCACTGCCCCAAACAAGCATTTGCCTTCTGGATACTGGAGACTGAGATGGAGAAGGTGGAGCTGGAAAGTGGCCAAGAAATCCGTCTAAAAACCAAGGGAGATGGCCCCTTTAT
>XM_022679695.1
atagtgatgGTGCTATTGTTCTTtcagctcacttacatttgtgaatgtgaaccgtcaataTAGCCAAAACCGTCCGATCTGTTAAAAAAATCCGacttgagcaatgtggcttgtaatgtgaacgtagccatagtcacccagacctgaaATGGAATCCCAATCTCCCACATTGTAGCTCACTgacaggcagtggtgttattcactgcaccacaccaaccaccgtTTCACTAAAGAGTGAAACGGTGTGCAGTGCAGTGCGGGTCACCGTGTTTCCTTATCCAGCAGATAGCGCTGTTTCACCAGCAGAAAAACACCAAAGGTCATCCAGCATTCAAAATGGAATCCAGCCCAAACCTGTCTGTCACACAGAAAGGGAGCCGCTACCCTGTGGACCTTCCCTGTCAGGACTATGATGAACTGAAACCTGACTCTGGTAAATACCTGTCAGACATGCAGACCTTCAACCTGCCCAGTGGAAATAAGgtgAAAGTAACTCAAGAGAATATAGGCCAGCTAAATCTCTTTGTTGATGATGATCCACCTCACTCCCTTCTGGCTCTTCATGCACCAGCTGATGAAACCCAAGTGGTTGCAATATACTTGCACAGAAAATGGTGGCCCATTTATGAAGTTTTAAAGACATCAAGCAAATCCAGATGTGGACTTTTGCTTGTGGAGTCAGTGATGGAGAGAGTTATACTCTTCCTGCTCAGTCAGATCATATTTGGAATACTGGAAAGGCCTCTGGGAGAAAACATGTACTTCTCCACTCATCCCATGCGGGAATATGCAAAAATCCTCTGGCAAGATGGAGAAGCAGTTGGcttttacaccattaaaaagAAAGGTAGCCTGTGCGATGGCTGCACTGGTCAAAGTTACCATCTCCCTGTGTTGGACACAGTGTATGTGCGCAGTCGCTGGAGGAAGAATGGACTAGGTTTACAGATGCTCCAGGATTTTTGCAGCTCCATGCCGAAAGAAAGTGCAATCGGAATAAGCTACCCTATATCTGCCAGCATGTTTGGAGTATGCAAGAAGTACCTAGAGACCCACCAGGATCAGAGGGAGCGCCTCTATGAAGTGGAGGCTCCTGGGGACTGGAGTCAGAGACGCAACGTGTGGTTGAGCATACGACTCCAGCTCCACCCAACACAGAGTGCAAGTTCAGATGAAAGTCCACACAGTTCTCAAGTTATGGAAAGAAAGCTCATACGCCCTGAGTCAAAGAGGCGCTGGGGTGATTCTGGAGGGGACTTTTATTGATGTGTCTCGTCATGCAATCACAGACACCAACAACAGAAAGGAGCGCTATTATATTCTGTATGTGAAGCCTAGCCGAATCCACTGCAGAAAGTATGATGCCAAAGGAAATGAGATCGAGCCCAATTTCAGTGAGACCAAGAAGGTCAACACAGGTTATCTTATGTCATCTTACAAACAGGAGGCCAAAGGTGAGTCAGATAGACTTACTGAAGACCAGCTGAAGGACATTGTGAACAAGAAGGAGCTAATTACAGTAACAGAGAAGCACTGCCCCAAACAAGCATTTGCCTTCTGGATACTGGAGACTGAGATGGAGAAGGTGGAGCTGGAAAGTGGCCAAGAAATCCGTCTAAAAACCAAGGGAGATGGCCCCTTTATCTTCTCCTTTGCCAAGGTGGATGCCGGAACAGTGACAAAGTGCAATTTTGCTGGAGATGAGCAGACTGGGGCATCGTGGACTGACAAAATAATGGCCAACAAAGCAGATACACTGAGTGATTCAAAACCGGCTGAGCAGGGCCAAGGAGCTGATGATGAAGAGTGGGATGACTGATCAGTACACAGAAGAAGACAAATGTATGAATACACTTTACATATGAATATTGACACTTTACGTATGAAGTTGGAATTACATAAACCTTTGATATGTGCCATAATAAAAgccatttttttacaaaaa
>XM_022679696.1
TCATGTGGTTTATTCACCAAAAACAAATCACATACAGTTTTATGCTGAGAAATGCCAAAATATGTAAATTGGTTGCCACAGTAAAACACTACCACAAAATATTCACTGTTAATAGCTTAGAAACCACAAGCTGAAGTTATGTAACAGATTCTCACTGAACCGGAGACTGTGGATAATAACTGGGCCTGTCTCTGACATTCCCTTTTAATATTCAAACCACTGGAGCTTTGGCCTGGTGTATGGTTTTAATGTTCTATCGAAAGATGAATGTTCAGCCGAACTTCAACCTTCAACCTTGCACAGTCGGCTGAAATAGGTTTTCCTGTGGCATCTCCTTGTGGTCTGTCcacttttttttagtctttaatCCTGAATGCATGCTCTATTCCCAAGGAAATGCATCCCAGTCACTGAAGTATTTAGCTGGCTTCATGATGCTTGTGTTCAGCTCATCTTCACATATAGGCGCTGGGGTGATTCTGGAGGGGACTTTTATTGATGTGTCTCGTCATGCAATCACAGACACCAACAACAGAAAGGAGCGCTATTATATTCTGTATGTGAAGCCTAGCCGAATCCACTGCAGAAAGTATGATGCCAAAGGAAATGAGATCGAGCCCAATTTCAGTGAGACCAAGAAGGTCAACACAGGTTATCTTATGTCATCTTACAAACAGGAGGCCAAAGGTGAGTCAGATAGACTTACTGAAGACCAGCTGAAGGACATTGTGAACAAGAAGGAGCTAATTACAGTAACAGAGAAGCACTGCCCCAAACAAGCATTTGCCTTCTGGATACTGGAGACTGAGATGGAGAAGGTGGAGCTGGAAAGTGGCCAAGAAATCCGTCTAAAAACCAAGGGAGATGGCCCCTTTATCTTCTCCTTTGCCAAGGTGGATGCCGGAACAGTGACAAAGTGCAATTTTGCTGGAGATGAGCAGACTGGGGCATCGTGGACTGACAAAATAATGGCCAACAAAGCAGATACACTGAGTGATTCAAAACCGGCTGAGCAGGGCCAAGGAGCTGATGATGAAGAGTGGGATGACTGATCAGTACACAGAAGAAGACAAATGTATGAATACACTTTACATATGAATATTGACACTTTACGTATGAAGTTGGAATTACATAAACCTTTGATATGTGCCATAATAAAAgccatttttttacaaaaa

Function

symbol description
arpin Involved in directional locomotion. Acts upstream of or within negative regulation of cell migration. Predicted to be located in lamellipodium. Is expressed in intestinal bulb. Orthologous to several human genes including ARPIN (actin related protein 2/3 complex inhibitor).

NR:

description
arpin

GO:

id name namespace
GO:0030027 lamellipodium cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256237.3 False 994 mRNA 0.45 6 18429751 18435115
XM_007256240.3 False 877 mRNA 0.45 7 18424250 18435115
XM_015607578.2 True 2332 mRNA 0.43 9 18415527 18425998
XM_022679692.1 False 1947 mRNA 0.47 12 18415527 18432488
XM_022679695.1 False 1945 mRNA 0.46 13 18415528 18435115
XM_022679696.1 False 1178 mRNA 0.42 6 18426393 18435115

Neighbor

gene id symbol gene type direction distance location
LOC103028633 NA coding upstream 149724 18261165 ~ 18265803 (+)
cftr cftr,LOC107738689,LOC107583749,LOC107596947,LOC107708216 coding upstream 250803 18134717 ~ 18164724 (+)
LOC107197792 LOC107197792 coding upstream 379831 18030488 ~ 18035696 (+)
wee2 wee2 coding upstream 385522 18023904 ~ 18030005 (+)
agk agk coding upstream 404973 18004007 ~ 18010554 (+)
kmt5b kmt5b,LOC107738677,LOC107694947,LOC107596936,LOC107583742,LOC108264420,LOC107726382,LOC107672243 coding downstream 26983 18462098 ~ 18468279 (+)
chka chka,LOC108424340,LOC107738676,LOC107726368,LOC107694945,LOC107583738 coding downstream 37821 18472936 ~ 18491526 (+)
LOC111194773 LOC106934266,LOC108233135 coding downstream 60979 18496094 ~ 18500819 (+)
ranbp10 ranbp10,LOC107583731,LOC107733562 coding downstream 327570 18762685 ~ 18813328 (+)
ripor1 fam65a coding downstream 443020 18878135 ~ 18980992 (+)
LOC111194744 NA non-coding upstream 1577 18413361 ~ 18413950 (+)
G159272 NA non-coding upstream 3591 18411312 ~ 18411936 (+)
G159184 asz1 non-coding upstream 287098 18114005 ~ 18128429 (+)
G159182 NA non-coding upstream 305988 18108163 ~ 18109539 (+)
G159129 NA non-coding upstream 418799 17995698 ~ 17996728 (+)
G159298 NA non-coding downstream 73296 18508411 ~ 18508695 (+)
G159344 NA non-coding downstream 178049 18613164 ~ 18615494 (+)
G159347 NA non-coding downstream 195355 18630470 ~ 18630853 (+)
G159349 NA non-coding downstream 217335 18652450 ~ 18652676 (+)
G159350 LOC108438999,LOC107726468,LOC107694939,LOC107733575,LOC107596927 non-coding downstream 217642 18652757 ~ 18657402 (+)
rapsn rapsn other upstream 429623 17971096 ~ 17985904 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other upstream 1043321 17327100 ~ 17372206 (+)
zwilch zwilch other upstream 1226276 17177675 ~ 17189251 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other upstream 1243299 17101612 ~ 17172228 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other upstream 1617127 16779506 ~ 16798400 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other downstream 90413 18525528 ~ 18576437 (+)
G159666 NA other downstream 1750401 20185516 ~ 20186919 (+)
G159728 NA other downstream 2301483 20736598 ~ 20737049 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other downstream 2574187 21009302 ~ 21011794 (+)
fam174b NA other downstream 2625541 21060656 ~ 21074573 (+)

Expression


Co-expression Network