CI01000012_12434858_12435727


Basic Information

Item Value
gene id CI01000012_12434858_12435727
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12433898 ~ 12436235 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_12434858_12435727.mRNA
AACCCGATTATGTACACTGAGCCCCCGGGAAAACAGCAGAAACACATATTCTCGGTAATAGTCTGATTTGGGTCAGTTCAGAAGAATGACAGCTCAGAAAAATAAACACGGACTTCTGGCAATTAAAGAGTTAGAGAATGTTCTGGACACATGTAAACTTGATCTAACTCCAGTCGACGAGGTCTGGCCGAACCTGTACATCGGAAACGTGTAAGTACTAGGCTACTACATAACTGATGATGCGGTGTTGTAACACATTAAATGCAAATGAGCTCTTATTTAAAGATTTTATCACGCAAGCTATGCCCATGTGGTTTATATTTAGTTTTATTATATTATCTTTATATTTAAGAATAAGCTATTTTATTCAAAGTGACTTATTTGTTTGAGATTCAATATAGTGTGCATCCCTCTAGTAAAATCAATTCTGCAGTTTATTCACTCTTAATTTTTTTTTAAAAACTTTTTTTATAGGGCCATTGCTCAAAATAGAAATGCTTTGAAGAAAATGGGCATCACTCATGTCTTAAATGCTGCCCATTCCAAGCAAGGCAGCATTGGGGACCAGAGCTATTATGGCAATACAATTGTATATTATGGCATCCCAGCAGAAGACTCTTCATCATTTGATCTTAGTGTGCACTTTAAATCGGCTTCTGATTTCATCCACAAAGCTTTGAGGAAGAAGAATGGTAAGGTGCTTGTTCATTGCATCATGGGAATGAGTCGGTCTGCCACTCTGGTTTTAGCGTACCTTATGCTGCGTCAGCGTCTTACTCTCCGCACTGCAATCCAAACGGTTGTATTGCAACGTGCAATCTATCCTAACAGGAACTTTTTGAGCCTTCTCCTGGATTTGGACATTCAGCTACAGAGAAAGCGAATGCTGTGTCCTATTCTCTGACAGAAAAACAACACAAATGTAATGAACACACAAAAGCACATGCATTCATTTACTAAAGGGTGAAGAGGTAACTAGCGCTGGTATGTTTACATGATTTATGATATGTATATATATATTTCTTAATAGTAAAACATGTGCCTTTCAGGTTTAGTGTATATGACATAGACCATCTTTCTACTTTTCCATACATTTACAAGGTTATTATATATAACTTGAGAATTTAGCTATAATAACGCTTTTAATATTGAATGAAAAAATATTTAACATACTTGACAACTGACATGTTTGCATAGTCCTTTTATTATGGGGGATTTTACCGTATAATGTAGTTTTATAATGTACCCTATAATGGTGTTTTTTTTAATGAAAATCTGTATGATATATTCACGTTGCAGCTTTATGAACCACAGCACACAAGTGCCACATGCTGCTCACACAGCAAATAATATTTAACAGTGGAGTCAGTATTCAGCTTAGAATACCAAATTAAGCAGTATTAAATGATTGAATTGTGGTTCATTATTCGGCTGCAGAGAAAACATTCACTGTGAGCAGTATTAGCTTTTACGCAGCCAAATTTGGAGAAATATACCGGCCAAGCACAACATTCTTCTGTTGACTCAATCCTAAAAGCCTTGTTTAAAATGACTGAGCAGCACTCGCTGATGTGATTTTTAGTGCACCCTTTTGCTTTAATAGCAGAATAATGTGTTTCATTCAGGTCATTGATTTACAGAAGTTCCTTTGTTAACTTGGAAAACATTAACTGGTGTTTTGTTAAATGCACTGTATAACTTAGAACATTTAATTGCACATGAGACTATTGACTATGAGTAGGATGAATATTCAATTTGTTACACTCTTATATCTGCCTATGTTAAGTATTTTTGAAAGTGTAACTGCACTAGTGGTTTCATATACAATGTTTCATGTACAGATACAAACAAGGTGCCAAATAAA

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K14165 K14165; atypical dual specificity phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_12434858_12435727.mRNA True 1864 mRNA 0.35 2 12433898 12436235

Neighbor

gene id symbol gene type direction distance location
CI01000012_12427476_12429642 DUSP13A coding downstream 4046 12427261 ~ 12429852 (-)
CI01000012_12423294_12424616 NA coding downstream 8964 12423190 ~ 12424934 (-)
CI01000012_12269600_12269899 NA coding downstream 163904 12269358 ~ 12269994 (-)
CI01000012_12255640_12268649 NA coding downstream 165102 12255478 ~ 12268796 (-)
CI01000012_12215687_12218599 AP3M1 coding downstream 215208 12215022 ~ 12218690 (-)
CI01000012_12437305_12438138 NA coding upstream 917 12437152 ~ 12438622 (-)
CI01000012_12467799_12485431 COL17A1B coding upstream 30994 12467229 ~ 12487091 (-)
CI01000012_12490611_12503873 CFAP43 coding upstream 54283 12490518 ~ 12503873 (-)
CI01000012_12521676_12524692 NA coding upstream 85441 12521676 ~ 12524692 (-)
CI01000012_12526785_12534198 ADAM8 coding upstream 90550 12526785 ~ 12534198 (-)
G77014 NA non-coding downstream 368923 12064562 ~ 12064975 (-)
G76966 NA non-coding downstream 487369 11945062 ~ 11946529 (-)
G76956 NA non-coding downstream 529163 11904512 ~ 11904735 (-)
G76914 NA non-coding downstream 533517 11897330 ~ 11900381 (-)
G76951 NA non-coding downstream 548221 11885447 ~ 11885677 (-)
G76994 NA non-coding upstream 216131 12652366 ~ 12665651 (-)
G77128 NA non-coding upstream 269104 12705339 ~ 12705552 (-)
G77134 NA non-coding upstream 282711 12718946 ~ 12719187 (-)
G77149 NA non-coding upstream 344525 12780760 ~ 12781057 (-)
G76982 NA non-coding upstream 462120 12898355 ~ 12899359 (-)
CI01000012_12079581_12084139 NA other downstream 349638 12078936 ~ 12084260 (-)
CI01000012_12047175_12052116 NA other downstream 381691 12046728 ~ 12052541 (-)
G75608 NA other downstream 1813027 10611915 ~ 10620871 (-)
G74982 NA other downstream 2857926 9575648 ~ 9576149 (-)
CI01000012_09400481_09401810 EIF4EBP2 other downstream 3031930 9398076 ~ 9402378 (-)
CI01000012_12954694_12954954 SF3B5, BRAFLDRAFT_284483 other upstream 518211 12954446 ~ 12957833 (-)
G77287 NA other upstream 1183041 13619276 ~ 13633819 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005986 zgc:153981 coding NC_007124.7 CM002897.2 24834199 ~ 24837977 (+)
tiger barb (Puntius tetrazona) zgc:153981 zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808 misc NC_056711.1 CM032080.1 9161517 ~ 9164114 (+)