cxcr5


Basic Information

Item Value
gene id cxcr5
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 25068911 ~ 25080426 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259535.3
CAAAAGGACCTTTAAAggcagaaaatataaataagttagAATTCAGTTATGAACCATATGTCTTTTGGgttaactagaaaaaaaaaaaaaactcaatctgCCTGAGAACAATGTGTGCCCACTGACTGATTACCACAGTTTCAGTAGTTTGATGTTGTGGGGAGTTTAAGAtgacaagagtgtgtgtgtgtgtgtgtgtgtgtgtgcgagggTGGGAGTGTAAATCTGAAGCAGAGAGCTGGAGTTTCCTGGAAACACGCTCGGCTGACCTTTACATCTGCAGTTTCCTCACTTCTGCCTCAGATTAACATTAGAATTATCAGAATTCTCTCAGGTCCAGCAACATGGAGCTGTACACCGGGGCGGATTCCCTTATTTACGAGTTTACAGATCTTGGTTTTGACAACATCTCAGATATTCCACCACTAGAAGACGAGTTTGTCTGTACCAACCAGGTTGACTCTCTGCGAATGTATCACACCGTCTTCCAGCCTCTGGTCTACAGTCTGGTGTTCCTGCTGGGCGTCACAGGAAACAGCCTCCTCCTGACCGTCCTACTGCAGCACCGTGCCCGCCTCCGCATCACCGAGATCTACCTGCTGCACCTGGCGCTGGCTGACCTACTCCTGCTCTTCACCTTCCCGTTCGCCATAGTCGAGGTACTGACCGGCTGGGTGTTCGGCAACTTCCTGTGCAAGTTCCTGGGGCTCCTGAACCGGCTGAACCTGGTGTGTGGAAGTCTGCTGCTGGCGTGCATTGGCTTTGATCGCTACCTCGCTGTCGTTCACGCCATCTCCAGGCTTCAAACCCGTCGTCCGCGGCTTGTCCACCTTACCTGTGCTCTGCTCTGGCTCTTCTGCCTCATGGTGACCATGCCCAACGTTGTGTTCCTCTCAGTGATGCCCAGCAATCAGTCTGACCGGCTGGAGTGCCACTTCAACAGCCATGGCATCTACGCCAACAACTGGCTAATCGCTAATCGCTTGCTGAACCACTTCTTGTGCTTCTTCCTGCCTCTGATTATCATGGGATACTGTTACACTGCTGTGGTGGTCACCCTTTACCAGGGTCAGCAGAGTCTGGAGAAGCAGGGGGCTATTCGGCTGGCGATGGTGGTTACCCTGGTGTTCTGCTTGTGCTGGCTACCCTTTAACATCACCTCGTTTTTGGACACTCTGGTGCGCTTGGATGTTCTGTCGCAGAAAACCTGCCAGGCTAGAAATTCGTTAATTCAGGGTCTGGTGGTCACTGAAAGTATTGGCTTCATCCACTGCTGCCTTAACCCGATTCTGTACGCTTTTGTTGGGGTGCGCTTCCGGAAAGACCTCCTGCGACTGCTGGCAAAATGGGGCTGCGGAAAGGCTGGAGTTCTGAGTAGGGTGTCGGTCTCTGAGTTggcaaccaccaccaccagcagccaGTACCAATACTGTCGGGATACATAAAAGAAACTTCTCCGAAaagtgtttgtaataaagtttcTGACTTTTTTCAACCAATCACTGGCTTGATGCTTTTGACTATGTAATGTAGTGCATTGCTGTGTAAGTagaggtgggacaaaatattgatattgccattgatttgcaatacattattgatatgtgccatcaaatatggatatttttattgaaacataggctCTCTAAAGTCTAAGACCTGCCCCCAACTTGAATTTgctttactaaagttactgcttcattactccacatggtggtgcAAACCAAATGAATAGGGTTAACCTGCTGTGAGGAATAatggttgtcaaattctgtaaaaaacTGACACCAGAGCTCCAGATTAAGACAGTCCCACTGTCCCTGGGCCAATAAAAATAGCACACCAGACAAGATTAAGGCTCTTTCTGGATACTTTTGGGAAGGATCAATTGCATTCTGTAAAAATGGCTAGAAGCTGTTTTTAAGGAGAACGCATGCTGGTTGGAATATGATATGGAATTTTCCTACTGCTTAGCATAAGgtctgtttacagataaagtTCTGCCTTAAAACATGGAGCCAATCAGTCTGTTGGTAACACTGTTGTCAGTCAACTCGGGAGCTTCAAAAGTGGCCATGGTAATCAACTAGTAGCAACTAGCTGGATAAAGGCAGAAATGAACTGTATTGATGAGAAATTGATGAGACCCTTAAAGACACATAAATagtaaagttaaaaataaatagttgggtcagataGTTTTCAGTTTGGGACAGCAGACAGAAGTTTGGGACAGTTGTAAAAAAGTTAGTCTGTATGAAAATACCATGGgttctggtatttgcttatttaggagtattttatctttttcagTAGCACAGATAATGTGAAGTATTATAGAGAATTGTCTTACgctatattgtttattgtagAGTATCATGATATCATCGTTATCGTGGGCagagtattgtgataatattgcctCGTaaaatgccctgtgattcccacctaTGTATAAGCCACACTATTTGGACATTAATACTGGGGCACCTACAAATTAAAcctaaatgagtttttattatcACATCCCATTATAAACCTAAAGCATTAACATTGAGTTGAGCTCCTGAGGTGGCAGCGGTATATGgtctctgattactgctttgcacactcttggcatcattctctcaatgagcttcaagaggtggtcacctgaaatggttt

Function

GO: NA

KEGG:

id description
K04190 CXCR5, BLR1, CD185; C-X-C chemokine receptor type 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259535.3 True 2664 mRNA 0.45 2 25068911 25080426

Neighbor

gene id symbol gene type direction distance location
nectin1 nectin1,LOC107758086,LOC107670612,LOC107563312,LOC102782356,LOC107691861 coding upstream 453982 24219859 ~ 24614929 (+)
LOC103024981 NA coding upstream 1119023 23943693 ~ 23949888 (+)
LOC103025495 LOC108429891 coding upstream 1155648 23747742 ~ 23913263 (+)
LOC103026225 cntn5,LOC107691883 coding upstream 1395775 23377869 ~ 23673136 (+)
LOC103030816 NA coding upstream 1974035 23060575 ~ 23094876 (+)
LOC103023437 NA coding downstream 403518 25483944 ~ 25500609 (+)
LOC103024914 NA coding downstream 423651 25504077 ~ 25510167 (+)
dhx34 dhx34,LOC102778731 coding downstream 429897 25510323 ~ 25521145 (+)
bicra gltscr1,LOC108413251 coding downstream 469002 25549428 ~ 25564612 (+)
ehd2 ehd2b,ehd2,LOC103039027,LOC108413254,LOC101154661,LOC107565090,LOC107668886,LOC107670629 coding downstream 485866 25566292 ~ 25576097 (+)
G160384 NA non-coding upstream 20333 25046937 ~ 25048578 (+)
G160383 NA non-coding upstream 21997 25046714 ~ 25046914 (+)
G160369 NA non-coding upstream 161356 24907229 ~ 24907555 (+)
G160368 NA non-coding upstream 204918 24863245 ~ 24863993 (+)
G160356 NA non-coding upstream 440992 24627442 ~ 24627919 (+)
G160518 NA non-coding downstream 242977 25323403 ~ 25380493 (+)
G160543 NA non-coding downstream 337217 25417643 ~ 25419939 (+)
G160576 psmd8,LOC108413249,LOC107672785,LOC107554985 non-coding downstream 459983 25540409 ~ 25546750 (+)
G160617 kti12,LOC107715238,LOC107562123,LOC107725737 non-coding downstream 514526 25594952 ~ 25599301 (+)
G160616 sec11a,LOC107691153,LOC107562127 non-coding downstream 531290 25611716 ~ 25615298 (+)
G160306 NA other upstream 949086 24119129 ~ 24119825 (+)
G160134 NA other upstream 2214830 22853412 ~ 22854081 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other upstream 2916126 22147844 ~ 22152785 (+)
fam174b NA other upstream 3994338 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 4057117 21009302 ~ 21011794 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 1243394 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 1536836 26617262 ~ 26755313 (+)
G160919 ptx3 other downstream 1824818 26905244 ~ 26907627 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other downstream 2029245 27109671 ~ 27119264 (+)
c18h3orf33 NA other downstream 2704470 27784896 ~ 27796504 (+)

Expression


Co-expression Network