LOC103023437


Basic Information

Item Value
gene id LOC103023437
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 25483944 ~ 25500609 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259546.3
CTGAGTTGGCCACGCCCTCTGAAACCTGAACCCGGCGTTTTCCGTGTTGTTTGGTCGCAGGTAGGCTGGAGATATGTGTTTGTCGATTGTTTCGTTCCGTGAAATCTGTACGATAAGGTAAACTTTGCTTACTCCCCACTAAAACTCTACTGTAACTCCAGAAACTCGGTTTTTGAGTGGATTTAGAGTGGATTTGGGTTTGAGTGGGTTAGTTTGAGCGCGAGACGCGGCGGTGCTGGGTGTGTTACTGGATCACCTGTAGTCTAAAAAACAGCAGGACGGGTTCAACTGCTTCCGGAAGTCTCAGCAGCAGACTAAACCCGGGCTGTGAGCTGAAGAGCAGCCGGTACTGGTACCAGAACCATGGACCCCATGGATGCAGGAATGCGGTACACCCCCAAGTCCTCGGATAGGGACTGGGACCAGGCCGTCACTTTTCTTCCAGCAACAGATTCGGCTAAACTGGAGAAAAAGAAGGGTCCAGGGAGGGTTGGTGCCATCTTGGGTGTGGTTGTATTTGCCTGTGTTCTGGCTTTAATAACGGGACTCCTCGTCTGGCATTTCCACTTCCGCAAGGATCAAAAGACGTTGAAGATGTACAACGGTTATATGCACATCACCAGCCAGGAGTTTCAGGCTGCTTACGAGAACCCAAATAGCACAGAGTTCCAGACCCTCGCTAAACAGGTCGTAACTCAGttgagAGATATCTACAGTAAAACCCCTGCACTGTCCAAATATTATGTGGACTCGACAGTACAGGCCTTCAGTCAGGGCAGTGTGGTGGCTTATTACCTGTCGGAGTTTCATGTTCCAGCatcacaggaagctgcagtagACTCTGCCATAAGTTCATTGGAGAACCTTAAATACCAGCGCAGTTTACAGTCCGGATCACTGATGTTTGACCGTGTTGTAGCTTCAGCGGTGGACCCACGGATGCTGAGGAAGCGCAAAATTAAAAGGTTCAGCGCTAACACACAACCCAACCGGCCCATCCTGGTCGAGTCACCCGACTTCCCCAACTTCCCGTACCCATCTAATACGCTGGTGCAGTGGCAGTTAAAGACCGAGCCTGGCAATGTCATTCAGCTGGACTTCCAAACCTTCTACCTGGAGAACGAATGCAAGAACGACTTTGTAAAGGTTTACGATTCGCTGGCAGCCATCGAAAGTCGGATCATGGCGGAAAAGTGTGGATACTACTCTCCCAACGACCCTCTTGGGTTCATATCCTCTGGTAACATCATGCTGGTCACACTGGTGACCAACGAGGAGGGAAACTATCCAGGCTTCAGAGCTATGGCCACACAGGTGGCGAGAGGAAGTCAAGGTATGTCATGTGGTGGAACTCTGAAAGGAAATTCCGGTACCTTTACATCTCCAAACTACCCGAAATATTACCCCCCCAACACCAGGTGTGAATGGACTATTGAGGTGCCGCAAAACATGAACGTGAAGCTGATTTTCTCAAAGTTCATGATGTCGGTGGGTCAGCCCGGCCTCTGCCAGAATGACTACGTACAAGTAAATGAGGAGAAgttgtgTGGTAGTGTTTCTGCTAATAAACTTGTGACAAGCAGTTCGAACGAGATGAAAGTGGTATTCTACTCAGATGGGTCGCTCGTGGACCGTGGGTTCAATGCCACATTCTCATCCTTTGAGCCCACTAACCCATGTCCTGATAAGTTCCTGTGCAACAATAAGCGCTGTGTAAGCCATGACCTTCGCTGTGACGGGTGGAACGACTGTGGGGACAGCAGTGACGAGAAGGGCTGCAAGTGTGACTCTTCGATGATCAGCTGTAGGAACGGGATGTGTAAGCCGATGTTCTGGAAGTGTGACGGGATTGATGACTGTGGAGATAGAACTGATGAGATGAACTGTgccTCTTGTAAGGCGGGTGAATTAGCGTGTGGTAATGGGAAGTGTATCTTGGAGAAGCAGAAGTGTGATGGGCGGGATGACTGCGGTGATAAGTCGGATGAAGTGGACTGTGGGCCAAAGACGGTGTGCACGGCGAGTAATTACAAGTGTAAGAACGGCGAGTGCATCACCAAACAGAACCCGGAGTGTGACGGAGAGAAAGACTGTACGGACGGGTCCGATGAGGACTGTGGAGACTGTGGGCTGAAAGCATTCAAGTTCTCCCGTGTTGTGGGCGGTCAGGATGCTGTTGTAGGAGAGTGGCCTTGGCAAGTCAGCCTTCACATTAAGAACTCCATTCACGTGTGCGGAGCGTCAATCATCAGCGAGCACTGGCTGGTGACCGCGGCCCACTGTGTACAGGACGATGCCAAAGTCAGGCTTTCTCAGCCGGGCTCGTGGGAGGCGTATCTTGGCCTTCACGACCAGAAACAGCTGGAAGTAGCTCAGAAACGCTACCTGAAGAGGGTCATCCCTCATCCCAACTATAACGAATACACCTTTGATAACGACATTGCCCTGATGGAGCTGGAGCAGCCCGTCACCTTCACAGACACCATCCGGCCCATCTGCCTGCCCTCCGCCTCCTACGACTTCCCCGCGGGCACAACTGTGTGGATCACAGGTTGGGGGGCCACCAGAGAGGGAGGTTCGGGTGCAAAGGTTCTGCAGAAGGCTCAGGTTCGGATCATTAACAGCACCGTGTGTGATTCTCTGATGGACGGTCAGATCACGTCCCGGATGACCTGTGCTGGAGTTCTGTCTGGAGGGGTGGACGCCTGCCAGggaGACTCTGGTGGTCCACTGTCCAGCAGTAATGGTGAACGGATGTTCCTGGCGGGGGTGGTGAGCTGGGGTGACGGCTGTGCCCGCAGGAACAAGCCTGGCATTTATTCTACTGTGCCCAAATTCCGCGCCTGGATCAAAGAGATGACAGGAGTATAACTCCAGGAAACACTTTGGAATTATATGTAATTCTATGGATTTTTTAAATGGACTTGAGAAAAGCATCGGTGATGTGTTCTACAGAGTGATCTGCCTGAGTGGACAAACTGAAATTCAGGTCTGCGTTCGACCCAGAGCTACGAGTCTGTGTCCTTCACACAGAACCAACACtttttatctgtgttttatttagtacagcacacacaacaccaccTACACACTCCATCACACTTCAGATagacattcattctttttttaattaattgtggTTTGTAGTTATCTGTTTTATATGTGAATATTTTATGTTGGGATGGGTTTtggttttatgtaaataaatgtattttctgcTTTTAAACTGGTTTCTCAGTAATGGATTTTTAGTGCCTGTAGCTTGTCCAATCCCTATCAATTAATCCAtcattatctgtctgtctttctgtaatGGGGGGCTATATTAAtatgtgtttaattttagaTCCTTTTTAATAGTTGATGAATTTACTGCTCATCCTCCTGAGTAATGTATATGTGTGCAGtttattaatacagtacagaactTACTAAAATGTGAATAAGACTTGTCATTCTTGCATATCATTTAACTCTCATTTACATGAATAAGAGACCATACTGACGCTATCGTTCTCTAATGAGCTCAGCTCATCTGTGggtctgtttattgttgtttgtgtATTGTTTTGTGTATATGTTATAGGTGAAGCAATTTGGTAATCTTACAGTCAGTGAATGTGAAGCTGTTGATGGGAACATtgtggttttttttgtttgtttgtaccaGGAGTTTTGCCTTTTACATTAATGGTGGCCGATCCAGTTCCACAAAGTGACCTCCGGTGTTTGAGCTCATTGTTTTTTCAGGGATTGCATTTAACTGCTGCATTTTAGACATTAGGATGCTTTTGAAAAACTTAATTGTGCCCCCAAATCTTTTGAATCTGTGAATATCAACAAATGCTAATTTGtccattaaatgtttttaatttaacccTGTAATCAGTCTCCTGCTGTCTGTACACAGATTAATAAACATATGCCTTATTAAAGGTTGA

Function

GO:

id name namespace
GO:0008544 epidermis development biological_process
GO:0008236 serine-type peptidase activity molecular_function

KEGG:

id description
K08670 ST14, PRSS14; suppressor of tumorigenicity protein 14

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259546.3 True 3941 mRNA 0.47 20 25483944 25500609

Neighbor

gene id symbol gene type direction distance location
cxcr5 NA coding upstream 403518 25068911 ~ 25080426 (+)
nectin1 nectin1,LOC107758086,LOC107670612,LOC107563312,LOC102782356,LOC107691861 coding upstream 869015 24219859 ~ 24614929 (+)
LOC103024981 NA coding upstream 1534056 23943693 ~ 23949888 (+)
LOC103025495 LOC108429891 coding upstream 1570681 23747742 ~ 23913263 (+)
LOC103026225 cntn5,LOC107691883 coding upstream 1810808 23377869 ~ 23673136 (+)
LOC103024914 NA coding downstream 3468 25504077 ~ 25510167 (+)
dhx34 dhx34,LOC102778731 coding downstream 9714 25510323 ~ 25521145 (+)
bicra gltscr1,LOC108413251 coding downstream 48819 25549428 ~ 25564612 (+)
ehd2 ehd2b,ehd2,LOC103039027,LOC108413254,LOC101154661,LOC107565090,LOC107668886,LOC107670629 coding downstream 65683 25566292 ~ 25576097 (+)
LOC103039536 napab,napa,LOC103039536,LOC108413256,LOC107668964,LOC107758075,LOC108264617,LOC103368726 coding downstream 80550 25581159 ~ 25586694 (+)
G160543 NA non-coding upstream 64005 25417643 ~ 25419939 (+)
G160518 NA non-coding upstream 103451 25323403 ~ 25380493 (+)
G160384 NA non-coding upstream 435366 25046937 ~ 25048578 (+)
G160383 NA non-coding upstream 437030 25046714 ~ 25046914 (+)
G160369 NA non-coding upstream 576389 24907229 ~ 24907555 (+)
G160576 psmd8,LOC108413249,LOC107672785,LOC107554985 non-coding downstream 39800 25540409 ~ 25546750 (+)
G160617 kti12,LOC107715238,LOC107562123,LOC107725737 non-coding downstream 94343 25594952 ~ 25599301 (+)
G160616 sec11a,LOC107691153,LOC107562127 non-coding downstream 111107 25611716 ~ 25615298 (+)
G160647 NA non-coding downstream 203908 25704517 ~ 25706252 (+)
G160654 NA non-coding downstream 238178 25738787 ~ 25739361 (+)
G160306 NA other upstream 1364119 24119129 ~ 24119825 (+)
G160134 NA other upstream 2629863 22853412 ~ 22854081 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other upstream 3331159 22147844 ~ 22152785 (+)
fam174b NA other upstream 4409371 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 4472150 21009302 ~ 21011794 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 823211 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 1116653 26617262 ~ 26755313 (+)
G160919 ptx3 other downstream 1404635 26905244 ~ 26907627 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other downstream 1609062 27109671 ~ 27119264 (+)
c18h3orf33 NA other downstream 2284287 27784896 ~ 27796504 (+)

Expression


Co-expression Network