LOC103045871 (cthrc1b,cthrc1,LOC108256451,LOC107726655,LOC105891862,LOC107592186,LOC107688280,LOC108413588)


Basic Information

Item Value
gene id LOC103045871
gene name cthrc1b,cthrc1,LOC108256451,LOC107726655,LOC105891862,LOC107592186,LOC107688280,LOC108413588
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 34071159 ~ 34092737 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015600786.2
TTGTTGGAGCTTTCTTCATTGAAACTCTGCTGCTGAAGATGGAGCAGCTAACGATCCCGGCCAGAGTCCTGCTGTTTATCTGCCTAATATTCCCCTGCCAGGGAGCTGAGCGAGCCAAACAGAGAGGAATAAGACAGAAGGACATGGAGTACATGGAGAAATACTCCAGCTGCCTGCAGGGTCCAGCAGGAATCCCGGGCAAGGAGGGAAATCCGGGAGTGAACGGGATCCCGGGAACGCCAGGTGTGCCGGGAAGGGACGGGGCCAAGGGGGAGAAGGGGGAATGCGTCAGTGAGATATTCGAGGAGCCCTGGAGACCCAACTACAAACAGTGCGCCTGGAACTCCCTCAACTACGGCATCGACCTGGGCAAAATCACAGAGTGCACGTTCACCAAGCTGCGCTCTGACAGCGCCCTGCGTGTGCTCTTCAGCGGCTCGCTCAGGCTCAAGTGCAAGACGGCCTGCTGTCAGCGCTGGTACTTCACCTTTAACGGAGCGGAATGCTCCGGGCCACTGCCCATAGAGTCCATCATCTATCTGGACCAAGGCAGCCCAGAACTCAACTCCACCATCAACATTCACCGGACCTCGTCAGTGGAAGGCTTGTGCGAGGGCGTTCGAGCTGGACTGGTGGACGTGGCTATCTGGGTGGGGACCTGCGGGGACTATCCCCGGGGAGACGCCTCCACCGGCTGGAATTCCGTCTCCAGGATGATCATTGAAGAACTGCCCAAATGACCTCGGACCTCCTCCATAATCCCCTGATTCAGATTATAAATCTGTGTGCAGATGTTCAGCAGAACGGGCTGGAACCAGCAGATCATCAACCACCATTACTGGAGAGCAGCTAAGGGTCCAAGTAGTTATTAGTAAATCAGCTTGAGAAGGTCCCGACACTTGAAGCACGAAGCAACTCTGTAGACTGTACAGTGTCCTGTCTTTTTTAtacgttttatatattttttgttattgggTTTTATATACAGTCAAGGCAGAATATTATGATACACTTACTGTCCAtgttatcagctccactgatcatataatgtatctgtctctctatttattttattattctacttcTTTAattgatgccac
>XM_022679884.1
TTGTTGGAGCTTTCTTCATTGAAACTCTGCTGCTGAAGATGGAGCAGCTAACGATCCCGGCCAGAGTCCTGCTGTTTATCTGCCTAATATTCCCCTGCCAGGGAGCTGAGCGAGCCAAACAGAGAGGAATAAGACAGAAGGACATGGAGTACATGGAGAAATGCACTGAGGGAAACACAGGCAAACTGAACTGCAGCAGAAACACAGCTGAGAGCCAGACACAAAATAACATGTACTCCAGCTGCCTGCAGGGTCCAGCAGGAATCCCGGGCAAGGAGGGAAATCCGGGAGTGAACGGGATCCCGGGAACGCCAGGTGTGCCGGGAAGGGACGGGGCCAAGGGGGAGAAGGGGGAATGCGTCAGTGAGATATTCGAGGAGCCCTGGAGACCCAACTACAAACAGTGCGCCTGGAACTCCCTCAACTACGGCATCGACCTGGGCAAAATCACAGAGTGCACGTTCACCAAGCTGCGCTCTGACAGCGCCCTGCGTGTGCTCTTCAGCGGCTCGCTCAGGCTCAAGTGCAAGACGGCCTGCTGTCAGCGCTGGTACTTCACCTTTAACGGAGCGGAATGCTCCGGGCCACTGCCCATAGAGTCCATCATCTATCTGGACCAAGGCAGCCCAGAACTCAACTCCACCATCAACATTCACCGGACCTCGTCAGTGGAAGGCTTGTGCGAGGGCGTTCGAGCTGGACTGGTGGACGTGGCTATCTGGGTGGGGACCTGCGGGGACTATCCCCGGGGAGACGCCTCCACCGGCTGGAATTCCGTCTCCAGGATGATCATTGAAGAACTGCCCAAATGACCTCGGACCTCCTCCATAATCCCCTGATTCAGATTATAAATCTGTGTGCAGATGTTCAGCAGAACGGGCTGGAACCAGCAGATCATCAACCACCATTACTGGAGAGCAGCTAAGGGTCCAAGTAGTTATTAGTAAATCAGCTTGAGAAGGTCCCGACACTTGAAGCACGAAGCAACTCTGTAGACTGTACAGTGTCCTGTCTTTTTTAtacgttttatatattttttgttattgggTTTTATATACAGTCAAGGCAGAATATTATGATACACTTACTGTCCAtgttatcagctccactgatcatataatgtatctgtctctctatttattttattattctacttcTTTAattgatgccac

Function

symbol description
cthrc1b Human ortholog(s) of this gene implicated in Barrett's esophagus. Orthologous to human CTHRC1 (collagen triple helix repeat containing 1).
cthrc1 Predicted to enable Wnt-protein binding activity and frizzled binding activity. Predicted to be an extracellular matrix structural constituent. Predicted to act upstream of or within several processes, including establishment of planar polarity involved in neural tube closure; inner ear development; and ossification involved in bone remodeling. Located in extracellular space. Part of collagen-containing extracellular matrix. Implicated in Barrett's esophagus.

NR:

description
PREDICTED: collagen triple helix repeat-containing protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015600786.2 False 1100 mRNA 0.52 4 34071159 34092737
XM_022679884.1 True 1172 mRNA 0.51 5 34071159 34092737

Neighbor

gene id symbol gene type direction distance location
LOC103027235 LOC107671459,LOC107688260,LOC108256161,LOC105891721 coding upstream 73715 33204707 ~ 33997444 (+)
LOC103043655 eif3h coding upstream 1028023 32918143 ~ 33043136 (+)
LOC103039334 LOC108412369,LOC107726662,LOC107671466,LOC107711537,LOC107592120,LOC107592485 coding upstream 1155510 32905654 ~ 32915649 (+)
LOC103040053 LOC103040053,LOC108412368,LOC105891959,LOC108256617,LOC101464589,LOC102196503 coding upstream 1191903 32782074 ~ 32879256 (+)
LOC103041297 LOC103041297 coding upstream 1341308 32721244 ~ 32729851 (+)
LOC111194818 LOC108413590,LOC105891915,LOC107592482,LOC108441798 coding downstream 26056 34118793 ~ 34161754 (+)
LOC103028011 LOC108413592 coding downstream 83371 34176108 ~ 34199772 (+)
LOC103027681 NA coding downstream 121149 34213886 ~ 34217803 (+)
mios mios,LOC107671474,LOC107592123,LOC107592481 coding downstream 207281 34300018 ~ 34315224 (+)
LOC103044586 NA coding downstream 226476 34319213 ~ 34349880 (+)
G162336 NA non-coding upstream 184315 33837477 ~ 33886844 (+)
G162329 NA non-coding upstream 273485 33797440 ~ 33797674 (+)
G162282 NA non-coding upstream 365770 33704083 ~ 33705389 (+)
G162281 NA non-coding upstream 402662 33661839 ~ 33668497 (+)
G162269 NA non-coding upstream 587749 33481348 ~ 33483410 (+)
G162373 NA non-coding downstream 1176 34093913 ~ 34097597 (+)
G162403 NA non-coding downstream 77663 34170400 ~ 34177227 (+)
G162405 NA non-coding downstream 110166 34202903 ~ 34203106 (+)
G162408 NA non-coding downstream 127375 34220112 ~ 34221336 (+)
G162442 NA non-coding downstream 306497 34399234 ~ 34399448 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other upstream 1351884 32714183 ~ 32719275 (+)
G162032 NA other upstream 1776130 32236316 ~ 32295029 (+)
G162017 NA other upstream 1922969 32068862 ~ 32148190 (+)
efhb NA other upstream 2465669 31584746 ~ 31605490 (+)
hmgn2 NA other upstream 3192832 30875038 ~ 30878327 (+)
ss18l2 ss18l2,kiaa0355 other downstream 1715128 35807865 ~ 35814793 (+)
pygo1 pygo1 other downstream 2019305 36112042 ~ 36120402 (+)
ccpg1 ccpg1 other downstream 2039678 36132415 ~ 36169745 (+)
G162964 LOC108431875,LOC108413582 other downstream 2661448 36754185 ~ 36754687 (+)
LOC103046025 hcn4,LOC108263998 other downstream 3194430 37287167 ~ 37352779 (+)

Expression


Co-expression Network