LOC107196896


Basic Information

Item Value
gene id LOC107196896
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 27419612 ~ 27420256 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015600979.2
atggCCAGCTCATCGGTGCAGGTTCATCATCTCATCCAtggagaagaggagaagaagaaacagGGAATGAAGAGGAGCAGGTCCCAGCTGACACCCGGAACTCCTGCAGCTCCTGAAGATTCACCAGTGAAGAGGAGGAAGATACAGACCTCCACCACTGTCCCTCTCACTCACTGGACGGTCGTCAGGAACACCTTTTGCTCTCGGCTGCTGCGGTTGGTAGGAGAGTTCTTGTGCCGCCGCTGTCGACTCCTCACGGGTCTTCGTCCCACCGTCCCCCCGTTCTGGATCCTCAACGTGGACACGACGCTGACCGTGCTCGGATATCAGCAGCAGCCCTTCATCTGCTCAGGCACCGTGGCCTTTCTCTACATGGTGTTGCGTGACACTGTGTCAGCGGAGGTGGCCAGCGTGGAGGAGCTGCGGGCGGTGCTCCTCTCCTGCCTGTATGTATCGTATGCGTACATCGGTCATGAGATCTCCTACCCAGCACTGCCTTTCATCATGAAGACGGACAGGCGGACATTTTGGAAGCGCACACTGAACATCACCCAGCGCATGAGCCGGAACATGCTGGAGATCAACATCTCGCCACATGTCTTCGCCAAGGTCATTTCTGACCTGAAGAAAGAGACGGctcattaa

Function

GO:

id name namespace
GO:0010842 retina layer formation biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015600979.2 True 645 mRNA 0.56 1 27419612 27420256

Neighbor

gene id symbol gene type direction distance location
tiparp tiparp,LOC106613254 coding downstream 42875 27339409 ~ 27376737 (-)
lekr1 NA coding downstream 122613 27136682 ~ 27296999 (-)
ptx3 NA coding downstream 501944 26905211 ~ 26917668 (-)
LOC103047806 NA coding downstream 613278 26801289 ~ 26806334 (-)
LOC103035975 LOC107714781 coding downstream 993340 26349161 ~ 26426272 (-)
LOC103029583 LOC108437982,LOC108264139 coding upstream 273487 27693743 ~ 27704738 (-)
gmps gmps coding upstream 298798 27719054 ~ 27751937 (-)
LOC103046178 LOC108437989,LOC108263992,LOC108434102,LOC108263974 coding upstream 564107 27984363 ~ 27988762 (-)
LOC111194787 NA coding upstream 571609 27991865 ~ 27996076 (-)
LOC103034808 NA coding upstream 595749 28016005 ~ 28020224 (-)
G161065 NA non-coding downstream 8904 27410488 ~ 27410708 (-)
G161062 NA non-coding downstream 11278 27408072 ~ 27408334 (-)
G161057 NA non-coding downstream 35034 27367862 ~ 27384578 (-)
G161042 NA non-coding downstream 224415 27191465 ~ 27195197 (-)
G161038 NA non-coding downstream 247674 27171404 ~ 27171938 (-)
LOC111194786 NA non-coding upstream 230 27420486 ~ 27421684 (-)
G161136 NA non-coding upstream 272179 27692435 ~ 27703228 (-)
G161147 NA non-coding upstream 358468 27778724 ~ 27779787 (-)
LOC111194796 NA non-coding upstream 761359 28181615 ~ 28191026 (-)
LOC111194797 NA non-coding upstream 767740 28187996 ~ 28189702 (-)
G160979 ccnl1,ccnl1a,LOC107710830,LOC107684610,LOC107714439,LOC107691967,LOC107563513 other downstream 300359 27109707 ~ 27119253 (-)
LOC103037634 NA other downstream 1073903 26342351 ~ 26345709 (-)
G160715 NA other downstream 1680250 25738881 ~ 25739362 (-)
LOC103041696 NA other downstream 1816900 25600660 ~ 25602712 (-)
G160566 NA other downstream 1942765 25476094 ~ 25476847 (-)
kcnab1 kcnab1,LOC108263953,LOC107675612,LOC102797568 other upstream 9685 27429941 ~ 27578918 (-)
LOC111194804 NA other upstream 1173244 28593500 ~ 28652947 (-)
LOC103037190 NA other upstream 1466655 28886911 ~ 28941387 (-)
G161711 NA other upstream 2895350 30315606 ~ 30325858 (-)
LOC103042221 LOC105901649,LOC107568871,LOC105028370,LOC108413244,LOC567622,LOC103367052,LOC107379323,LOC100706402,LOC101466533 other upstream 3278914 30699170 ~ 30781708 (-)

Expression


Co-expression Network