LOC103025504 (LOC108425960,LOC108266765)


Basic Information

Item Value
gene id LOC103025504
gene name LOC108425960,LOC108266765
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 3858506 ~ 3899215 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015601072.2
gtattaaagtgtgtgtgtgttgagctcgTGCGGGTAAACCCCGCCCCCAGGCGTGTCGTCACCGCTGTGCTCTCGgtgagtgtgtgtctctgtgctgctgccgtttctctctgtgtttcagtaGCGGCGCTCTGTGCTCTCTGCACTTCTCTCAGGTTTACGGGGATTCCTCTGTGTTAAAGCTGTGTGGATGGCTGATAATTGCTGTTGTCATTGGAAGATAACCATGGGAGGAGCACCCTGACCGAGACGGGAAAGTGCATCAAGAACCGAAATCATGGCTGCCCATCGAATTCGCTCAGCAAACAACAATAATGCTCTTCCTCGCTGCAAGTCTGAGGGAGCACTTATTGATCTGAGTGAAGGAGTTTCAGAAGCCACCCTCACTGATGTTAAAGTGCCTACTCCTAGTGCCTTGCGGCTGGATACAACTGCCTCAATTGGTTCTGCAAGAGAAGTTATTGCCATTAAGGATTACTGTCCATCAAGCTTCACTACCTTAAAGTTTTCTAAAGGAGACTGTCTCTATGTTCTCGACACATCTGGTGGCGAGTGGTGGTATGCCCACAATAATACGGAGATGGGTTACATTCCAGCAGCCTACGTTCAGCCTATTAAACATCGAGACTCTTCGTTCTGCGACAGTGGCATGATCGACAGTATCGGAGATGTTTCTAAGGATGGGGCCAAAGAAGTGGAGCAGCGTGGGGAGTGGTCTGCATTCACACAACCTGCTCTTCCTCAAAACGGGAATCCTTTTGTGACGAGGCGGATGTCTACCAATCCTTTCCTTGATTGTTCCTTGCAAGGCACAGCTGATCAAAACCAGAGTGTCCAGAGTTCTACCGACCTCCTCAGATTGGACTCTAAGGCCAGCAGCACTGTTAACATCAACGGTTTTGGGAGTGATATATTTGACAGAAACTTCTTGTCTCCGAACCTGGGGAAGAGTCAAGTTCTCCGAAGAGACAACCCATTCTACAGAAGCAAGCGCTGCTACAGCTTGTCAGAACTGTCTGTCTTGCAAGCCCAAGCAGACTCACCTGAAGAGTTTGTAAGCTTCTTTGGTGGTTTGAAAGCGCCTGCACCTGAAGAGTTTCAGAGCCGTGAAGACTTTAAAAGTGCCTGGTTAAGCCATAGAAAGCTGGCAAGGTCCTGCCACAACCTGGATTCCATTGGACAAAATCCTGGCTGGGGTCAAACGCAGCCCATCGAGACTAACATCGTATGCAAACTGGACAGTTCAGGTGGTGCTGTTCAATTACCCAACACTAGCATCAGCGTCCATGTTCCTGAGGGCCATGTCTCATCAGGGGACACTCAGCAAATATCTTTGAAAGCTTTACTAGATCCACCACTGGAGCTGAACAATGACAAATGCACTACTGTGAGCCCAGTGGTGGAGGTTAAACTCAGTAATATGGAGACTAAAACCACCATAACCTTAGAGATGAAAGTGTCTGTGGTGGTAAAGATGGAGAGTCGACAAAAGGCCGAAGTGATCTGCGTCAGGAGCGACTGCAAGGAGGGACCGTACATTCCAGTTCCTCATGCCTACATGTACGGAGATACTGTTCAAGTAGCCTTGGACAATTTAGAGCCGTGTATGTATGTGTCAGTTGTTGCTCAAGCCCAAGTCGTAGCCCCGTACGCTACGGTCTGGGAGCATGTAGTGAAGAAGGTCACGCTTGGCGTATATGGCCCCAAACACATCCACCCATCCTTCAAATCAGTGGTCGCCATCTTTGGTCATGACTGCGCTCCAAAAACCTTACTAGTAAGCGAAGTTAAGAAGCAGTCACACTGCACCCCACCAGTGACCCTGCAGTTGTGGGGCAAGCACCAGTTTGTCCTCGCAAAGCCTCAAGACCTTCAAGTCGGGATGTACTCCAACATGTTAAACTTCGAAGTGAAGGCCAGTGAGCAGGAAAGGATAGTAAGAGGCTTCCAACTGAAACTTGGCAAAGTGTCCCGACTCATCTACATGATATCTGCCCGTGACCCAGCAAAAATCTCAGACTTCACTCTGCGGGTTCAGGTCAAAGACGACCACGATTGCAGCCTCGCCCAGTTCTGCGTCCAAACTCCCACGCCTCCCCCGAAGGCAGCCACCAGGGGCTCAGTGCAGAGACGCTTCCTGAAGAAGAAGGAAGTCAACAAAATCATCCTGTCTCCTCTTGTCTCAACCATAAAGTACCCTGTGTTCCAGGATAGACCCATCAAAAACCTCAAATTTGGAAAGCTGTTGAAAACCGTAATCAGACAGTCCAAGAACCAGTACCTGCTGGAGTATCTGAAAGGAGATGTGGTGGCACTTCTGTGCGAGGAAAAAGTCAAACTAAAGGGGCATCTCTGGACCAAAGAGTGGTATATCGGCTTCTGCCACAGCAGAATCGGGCTGGTACACGCAAAGAACGTTCTAATAATGGGGAAGGTCAAACCGCCTAATTATAAGGGGGCCGATTTGACATCTTCTGTGCTCCTGGACCAAATTCTCCGGCCCTGCAAATGCCTCACGTACATCTACGCCTCAGTGAGGACTATACTGATGGAAAACGTGGGGAGCTGGAGAGCATTCGCTGATGCCTTGGGCTATGTCAACCTTCCTCTGACACACTTTTGTCGAACAGAGCCAGACAGCGAGGCTGAGAAAGTGGCTTCTGTTCTGGAGAAGCTTAAGGAGGACTGCAATGCTGTGGAGGGAAAAGAAAGGAAGTCGTTCCAGAAGGAGCTCATGTCGGCTCTGCTGAAGATGGACTGTCAGGGTCTGGTGGCTCGGCTGGTGAAGGACTTCGCTCTGTTGACCACAGCAGTGGAGGTGGCCGGCCGGTGGAGGGAACTGGctgaaaaactggccaaagtaTCTCGAAAGCAAATGGACGCTTACGAGGCTcctcacagagacagagacggCGTGGTGGACAGTGAGGCCATGTGGAAGCCAGCTTACGACTTCCTGGTGACGTGGGCAGCCCAGGTCGGGGATAGCTACCGGGACGTGCTGCAGGAACTTCACGCAGGCCTGGACAAAATGAAGAACCCCATCACCAAACGGTGGAGACACTTGACAGGAACCCTCATCCTGGTTAACTGTCTGGACCTCTTACGGAGCTCCGCCTTCAGTCTGGCCCCTCAGGACGACTGTGCTGTATAGTCAAGGTCAAAGGCTTTGGAGGTGAATTACATCATCAGTATGCTGAGGTTAAGTGGATCAGGGACAACAGCCTCAGCAAGATACCCTGAGGTCAACATGAACTTGTGGTCGATCCAAATGTGTTCAAAGTGTGGAAAACTTTTCAGAGAAAGAGCAGAGTTTCTTACATTTGAACATTTCAAATGGAAAAGAGATCAACTCTGAAACCAAACTACTGACTGAggaaataatgtgtaaataagtGTATGGAGCAAAGTTATCAAACATGCATTATTTGTTTGTCTGAGAAACACTGTGTCGGCATGAGCTCAAAGCAAAGCTTGGATCAATGTAACACTGACTCTAATCCAACTTTAAAAGGATTCTTACCTTGTTTAACATTTGAGCCCTTTGAATAACTTTCTATGTCTAATTTCTAGGCACctcaaacatttttatatgaaCTTTGCAATTGATTTGTTGAAACTACTTCAAATAAGTCCTGGACTCCTAATGAACTCTATGAGCCCTACCTTACACCCTTTGCAAGTCACGTcttgatgcttattgctattttacacctGAAAACTCTATTTTCAAGCTTTCCTTACACCTGCGTCATTTATATAGCAACGGTGCTTGTAAATATACCctcactgatgggcgtggtggtctggaaattacctgtgttcagatacatttctggtgtattgctatcttggcaacggaaaatacaggtgcaccactgactgaatacaacctagacagacatcaacatCAGATATTCATGACGTAAATGACCTGCTGgcacaccttcacagtgtgaatgtcagtttcctctgctgagaagcgttggagACCTCCAGATAGCTTtcgcccctgaaatagcaatttgccaaagtcagagtgcacttggatcttaaagggaat
>XM_022679493.1
ATGATGAACCTGATAAAATCGACAGTGGCGTGAAGACCTGAACGTTTATGCCGTGTGATGCAACAGCTAAGCAAGCTGTGTGGATGGCTGATAATTGCTGTTGTCATTGGAAGATAACCATGGGAGGAGCACCCTGACCGAGACGGGAAAGTGCATCAAGAACCGAAATCATGGCTGCCCATCGAATTCGCTCAGCAAACAACAATAATGCTCTTCCTCGCTGCAAGTCTGAGGGAGCACTTATTGATCTGAGTGAAGGAGTTTCAGAAGCCACCCTCACTGATGTTAAAGTGCCTACTCCTAGTGCCTTGCGGCTGGATACAACTGCCTCAATTGGTTCTGCAAGAGAAGTTATTGCCATTAAGGATTACTGTCCATCAAGCTTCACTACCTTAAAGTTTTCTAAAGGAGACTGTCTCTATGTTCTCGACACATCTGGTGGCGAGTGGTGGTATGCCCACAATAATACGGAGATGGGTTACATTCCAGCAGCCTACGTTCAGCCTATTAAACATCGAGACTCTTCGTTCTGCGACAGTGGCATGATCGACAGTATCGGAGATGTTTCTAAGGATGGGGCCAAAGAAGTGGAGCAGCGTGGGGAGTGGTCTGCATTCACACAACCTGCTCTTCCTCAAAACGGGAATCCTTTTGTGACGAGGCGGATGTCTACCAATCCTTTCCTTGATTGTTCCTTGCAAGGCACAGCTGATCAAAACCAGAGTGTCCAGAGTTCTACCGACCTCCTCAGATTGGACTCTAAGGCCAGCAGCACTGTTAACATCAACGGTTTTGGGAGTGATATATTTGACAGAAACTTCTTGTCTCCGAACCTGGGGAAGAGTCAAGTTCTCCGAAGAGACAACCCATTCTACAGAAGCAAGCGCTGCTACAGCTTGTCAGAACTGTCTGTCTTGCAAGCCCAAGCAGACTCACCTGAAGAGTTTGTAAGCTTCTTTGGTGGTTTGAAAGCGCCTGCACCTGAAGAGTTTCAGAGCCGTGAAGACTTTAAAAGTGCCTGGTTAAGCCATAGAAAGCTGGCAAGGTCCTGCCACAACCTGGATTCCATTGGACAAAATCCTGGCTGGGGTCAAACGCAGCCCATCGAGACTAACATCGTATGCAAACTGGACAGTTCAGGTGGTGCTGTTCAATTACCCAACACTAGCATCAGCGTCCATGTTCCTGAGGGCCATGTCTCATCAGGGGACACTCAGCAAATATCTTTGAAAGCTTTACTAGATCCACCACTGGAGCTGAACAATGACAAATGCACTACTGTGAGCCCAGTGGTGGAGGTTAAACTCAGTAATATGGAGACTAAAACCACCATAACCTTAGAGATGAAAGTGTCTGTGGTGGTAAAGATGGAGAGTCGACAAAAGGCCGAAGTGATCTGCGTCAGGAGCGACTGCAAGGAGGGACCGTACATTCCAGTTCCTCATGCCTACATGTACGGAGATACTGTTCAAGTAGCCTTGGACAATTTAGAGCCGTGTATGTATGTGTCAGTTGTTGCTCAAGCCCAAGTCGTAGCCCCGTACGCTACGGTCTGGGAGCATGTAGTGAAGAAGGTCACGCTTGGCGTATATGGCCCCAAACACATCCACCCATCCTTCAAATCAGTGGTCGCCATCTTTGGTCATGACTGCGCTCCAAAAACCTTACTAGTAAGCGAAGTTAAGAAGCAGTCACACTGCACCCCACCAGTGACCCTGCAGTTGTGGGGCAAGCACCAGTTTGTCCTCGCAAAGCCTCAAGACCTTCAAGTCGGGATGTACTCCAACATGTTAAACTTCGAAGTGAAGGCCAGTGAGCAGGAAAGGATAGTAAGAGGCTTCCAACTGAAACTTGGCAAAGTGTCCCGACTCATCTACATGATATCTGCCCGTGACCCAGCAAAAATCTCAGACTTCACTCTGCGGGTTCAGGTCAAAGACGACCACGATTGCAGCCTCGCCCAGTTCTGCGTCCAAACTCCCACGCCTCCCCCGAAGGCAGCCACCAGGGGCTCAGTGCAGAGACGCTTCCTGAAGAAGAAGGAAGTCAACAAAATCATCCTGTCTCCTCTTGTCTCAACCATAAAGTACCCTGTGTTCCAGGATAGACCCATCAAAAACCTCAAATTTGGAAAGCTGTTGAAAACCGTAATCAGACAGTCCAAGAACCAGTACCTGCTGGAGTATCTGAAAGGAGATGTGGTGGCACTTCTGTGCGAGGAAAAAGTCAAACTAAAGGGGCATCTCTGGACCAAAGAGTGGTATATCGGCTTCTGCCACAGCAGAATCGGGCTGGTACACGCAAAGAACGTTCTAATAATGGGGAAGGTCAAACCGCCTAATTATAAGGGGGCCGATTTGACATCTTCTGTGCTCCTGGACCAAATTCTCCGGCCCTGCAAATGCCTCACGTACATCTACGCCTCAGTGAGGACTATACTGATGGAAAACGTGGGGAGCTGGAGAGCATTCGCTGATGCCTTGGGCTATGTCAACCTTCCTCTGACACACTTTTGTCGAACAGAGCCAGACAGCGAGGCTGAGAAAGTGGCTTCTGTTCTGGAGAAGCTTAAGGAGGACTGCAATGCTGTGGAGGGAAAAGAAAGGAAGTCGTTCCAGAAGGAGCTCATGTCGGCTCTGCTGAAGATGGACTGTCAGGGTCTGGTGGCTCGGCTGGTGAAGGACTTCGCTCTGTTGACCACAGCAGTGGAGGTGGCCGGCCGGTGGAGGGAACTGGctgaaaaactggccaaagtaTCTCGAAAGCAAATGGACGCTTACGAGGCTcctcacagagacagagacggCGTGGTGGACAGTGAGGCCATGTGGAAGCCAGCTTACGACTTCCTGGTGACGTGGGCAGCCCAGGTCGGGGATAGCTACCGGGACGTGCTGCAGGAACTTCACGCAGGCCTGGACAAAATGAAGAACCCCATCACCAAACGGTGGAGACACTTGACAGGAACCCTCATCCTGGTTAACTGTCTGGACCTCTTACGGAGCTCCGCCTTCAGTCTGGCCCCTCAGGACGACTGTGCTGTATAGTCAAGGTCAAAGGCTTTGGAGGTGAATTACATCATCAGTATGCTGAGGTTAAGTGGATCAGGGACAACAGCCTCAGCAAGATACCCTGAGGTCAACATGAACTTGTGGTCGATCCAAATGTGTTCAAAGTGTGGAAAACTTTTCAGAGAAAGAGCAGAGTTTCTTACATTTGAACATTTCAAATGGAAAAGAGATCAACTCTGAAACCAAACTACTGACTGAggaaataatgtgtaaataagtGTATGGAGCAAAGTTATCAAACATGCATTATTTGTTTGTCTGAGAAACACTGTGTCGGCATGAGCTCAAAGCAAAGCTTGGATCAATGTAACACTGACTCTAATCCAACTTTAAAAGGATTCTTACCTTGTTTAACATTTGAGCCCTTTGAATAACTTTCTATGTCTAATTTCTAGGCACctcaaacatttttatatgaaCTTTGCAATTGATTTGTTGAAACTACTTCAAATAAGTCCTGGACTCCTAATGAACTCTATGAGCCCTACCTTACACCCTTTGCAAGTCACGTcttgatgcttattgctattttacacctGAAAACTCTATTTTCAAGCTTTCCTTACACCTGCGTCATTTATATAGCAACGGTGCTTGTAAATATACCctcactgatgggcgtggtggtctggaaattacctgtgttcagatacatttctggtgtattgctatcttggcaacggaaaatacaggtgcaccactgactgaatacaacctagacagacatcaacatCAGATATTCATGACGTAAATGACCTGCTGgcacaccttcacagtgtgaatgtcagtttcctctgctgagaagcgttggagACCTCCAGATAGCTTtcgcccctgaaatagcaatttgccaaagtcagagtgcacttggatcttaaagggaat

Function

NR:

description
PREDICTED: SH3 domain-binding protein 4-like

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0061462 protein localization to lysosome biological_process
GO:0034260 negative regulation of GTPase activity biological_process
GO:0008285 negative regulation of cell population proliferation biological_process
GO:0010508 positive regulation of autophagy biological_process
GO:0030308 negative regulation of cell growth biological_process
GO:0071230 cellular response to amino acid stimulus biological_process
GO:0032007 negative regulation of TOR signaling biological_process
GO:0030136 clathrin-coated vesicle cellular_component
GO:0005905 clathrin-coated pit cellular_component
GO:0005634 nucleus cellular_component
GO:0005092 GDP-dissociation inhibitor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015601072.2 True 4063 mRNA 0.48 5 3858506 3899215
XM_022679493.1 False 3956 mRNA 0.48 5 3860658 3899215

Neighbor

gene id symbol gene type direction distance location
ndufa10 NA coding upstream 894955 2942774 ~ 2963551 (+)
LOC103044837 NA coding upstream 920436 2882827 ~ 2938070 (+)
parp9 NA coding upstream 1051752 2792039 ~ 2806754 (+)
lrch3 lrch3,LOC103027580 coding upstream 1137547 2671503 ~ 2720959 (+)
tspan4 tspan4,tspan4a,LOC106561924 coding upstream 1952792 1692598 ~ 1905714 (+)
LOC103036562 hipk3 coding downstream 78537 3977752 ~ 3999462 (+)
LOC103036857 LOC108433503,LOC108264854 coding downstream 109111 4008326 ~ 4123480 (+)
LOC103029469 spon1,spon1a,LOC107741890 coding downstream 397104 4296319 ~ 4510540 (+)
LOC103037478 LOC108434021 coding downstream 778988 4678203 ~ 4738405 (+)
LOC103030327 maf,LOC108428434,LOC107728098,LOC107381304,LOC108274756 coding downstream 1017013 4916228 ~ 4920871 (+)
G155978 NA non-coding upstream 9634 3848455 ~ 3848872 (+)
G155976 NA non-coding upstream 10889 3846849 ~ 3847617 (+)
G155967 NA non-coding upstream 89179 3768573 ~ 3769327 (+)
G155956 NA non-coding upstream 181649 3676632 ~ 3676857 (+)
G155866 NA non-coding upstream 737346 3120035 ~ 3121160 (+)
G155985 NA non-coding downstream 7779 3906994 ~ 3907195 (+)
G156009 NA non-coding downstream 61679 3960894 ~ 4005992 (+)
G156050 NA non-coding downstream 289291 4188506 ~ 4188789 (+)
G156060 NA non-coding downstream 346036 4245251 ~ 4245521 (+)
G156062 NA non-coding downstream 348607 4247822 ~ 4248039 (+)
LOC111194753 NA other upstream 244015 3611018 ~ 3614491 (+)
G155776 NA other upstream 1103394 2738361 ~ 2755112 (+)
G155491 akt2,LOC107711004,LOC107557843,LOC107692744,LOC107572728,LOC107714435,LOC108264340 other upstream 2580244 1187146 ~ 1278262 (+)
LOC103036073 LOC106581333,LOC102227031,LOC105940324 other upstream 2635156 1203741 ~ 1223350 (+)
LOC103044527 NA other upstream 2751714 1103450 ~ 1106792 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other downstream 30116 3929331 ~ 3932163 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other downstream 676453 4575668 ~ 4637290 (+)
G156188 NA other downstream 1257939 5157154 ~ 5157400 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other downstream 3194292 7093507 ~ 7171625 (+)
LOC111194759 NA other downstream 3473161 7372376 ~ 7431568 (+)

Expression


Co-expression Network