LOC103026556 (LOC108264446)


Basic Information

Item Value
gene id LOC103026556
gene name LOC108264446
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 8508404 ~ 8513431 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015601452.2
GGCTTAGCATGTCTTagcttttttttcaatgtagcaGAACATATATATCATATGACTACTTTAAACATCTCAAAACCACATTTTGTGTTTCAGATATCTAGAAGCAAGTCATCTAAGGCTGGGAATGAGTCAGGAACTATGGATACTCTTTGGCAGGCTGTATCAACATTAATGCTTTATCTAGTATCATGTTTAAAATGCAGCTTAGTCTATATTCAGAAGTTTTTAGGGTTTGAAGGTAGTTTAGTTGGGGTTAAGCAGAATGTAGCAAAATTGTCTAGAGTGTGGGGTCCTTCTAATGTGGATCCATTGAGGAATGGGTCAAATGGCAGCCAAACAGAGGCATGGAAAGCAGACCAGGAGTCCAGGACCTATTGTTACCACAGTAATGGACCAATGGTTGCACTGCAGACCAGCACACACATATTCTATGCTGATTTGGAAAGGCTGGCAGAATGCAGTGAGTATTTCAGGGCTTTGTCCCAGTCCTGCATGAGAGAAACTGAAGATCATCTAGTGAACCTGTCCCATGTACCGTCCAGAGTTTTCCACAGCCTCCTGCAGTTCTGCTTCCTACACAGATTCAGTGTACCAGATCACCTCATTGAGGAGCACCTTCGGGTGAGCACCTATCTGTTGGTTCCGGGCTTCACTAGTCGCTTGCTATTGGCCCTATCTGAGATCCTCACGGAGCGTACCTGCCTGGATTACCTACGGCTGGCTGAGGAGCTGTGCACTGATGAACTCCAAGAGACTGTGCTGGTCTACCTGAGCAAGAACCTTCTGGAGCTTCCTCGCCTGAACAGAAACCTGGAGCTCCATCTACAGCAGGAGCTTCTGCTGATGCGATCACAGGGCACCCCACAGCTGTGCTGCTTCAGGAAAGAGAACCTGATCTCAAGAGACAACCAGGAAACGGACCGTGCGAGGAGGCTGTTCAGATTAGAAGAGGAGGACTGGAAATGGAGCTCAGTTACAGATCTGCCTTTCACTGCAGATAAGTGGTGCTTCACCACAGCTGTCCTGTTTAATTACCTCTACATTATTGGGGGCTATCGGCACCACGCGAAAAGGGGGTATGAATTTAAGATGGCCTCCTTTCGTTATAATCCCTTGACGGATAAATGGGTGAAAACTGCACCTCTCATCAAgCATAGGAGGCACTTCAGTGCAGCCGTGTGTGAGGGTCATATTTACGCTGTTGGGGGCTGGTATCTGGACTCGCTGGTGACCCCCGACTCTACCACAGGAGTGTACACAGCTGTGGAGCGTTATGACCCGTGGGCAGACTCCTGGTCCTTCGTCTCCTCTCTCCCCCTCACAGATTTCCAGTTTACTCTTTCCCTTTCTCATGATTCCCCCCTTACCACCAGTCTAGGGACCTGTCTGTACGTGCTGGGCAACATCCAGAGAACTGGGGAGAAACTGGTGTTGCGTTATGATACAACCCAAGACAGCTGGAGTGAGCTGTATCCCACTCTCACTCGCGCAAGTGCCGATATCCCCATCCTCCACTTCCTGGGAGCCACAGACAAGTTGATCGTAATTGGCGGGAACAATTTTGAAACCGTTGTGACGTCCTTTTGTGTGGACACTCAGAAGTGGGGTCAGATCCGAAGCATGGAGAAAACTGCTCTGATTGGTCAAGGCACCGTGTTTAATGATGAGGTTTACATGTCAGGAAATCAGGAGGATGTAATCTTCCGCCTGGATCTCCaaaatctgtctttctctctgctccCTGCACTTCCTGTCTCCACGTACTACGAGAGCTTTTTCCACCTCTTCTTCTGAGTCATGTACTGTGATCCCTATCGGCTCCAAGCAGGAGCAACATAAGGGCGGGTACGGACAATATGTCATGCAAAGACTGTTgagtaaatatattgtaaagttGAAGGTCTTTTATAGGACACTGAGTAACTGATATGCTGGAAATAATAAACACTATTTGTAGATGTTC
>XM_022679553.1
ACCTTTTGGTTAAATGTTACAGTTCAATTCAAtttcaatctgtcaagttttcttaATGTTCTtagagtgtttttatttaacatttacaacaaaaaaacgtCACTTGtatcaatgttttcttttttagttttgggaatgttagtTTAGATAGCTGGGAAGGTTCTGTTTCCAGTTctaataactttattattttcagaacattcctgaaattttatttctgtaaccTTCTTAGAACTATTTTTAATCATTGCTAAGTTTTCTTATAACTTTCTTATTAGAATCCAATACAAAACTGGAAGAGAGGCCTGCAAATATTACATGGGTCAGTTTCCCaggcagggattaagcctagtcttggactacacaatATTTTGAATGGATATTATTTTCCTTTGAAAGGATAATGTGGTCTAAGGCAAGGCTTAATCCTGATCTGGGAAACTGTACCAATAAGTATTAGCTTTCCTACCATCATTCAGTCCTGCAGCAGTCTTGTATCTGGTAATCCAATATGGCTGTACTGTGTCCTGTTTCATTCCAATGCCAGAGGCAGTGAACTTCCTAAAATAGCTCTGCTGCAGCAGACAGCATCCATACTGAGCTGCTTCTGCTGAGTGGAAAGAAAGAAGCCTTCAAAACAAATGGGCCTACACTGAGAGAGAAACCAGGGGCTCGACTGATTCAACTAGCCAGAGACTGGATAAGATATCTAGAAGCAAGTCATCTAAGGCTGGGAATGAGTCAGGAACTATGGATACTCTTTGGCAGGCTGTATCAACATTAATGCTTTATCTAGTATCATGTTTAAAATGCAGCTTAGTCTATATTCAGAAGTTTTTAGGGTTTGAAGGTAGTTTAGTTGGGGTTAAGCAGAATGTAGCAAAATTGTCTAGAGTGTGGGGTCCTTCTAATGTGGATCCATTGAGGAATGGGTCAAATGGCAGCCAAACAGAGGCATGGAAAGCAGACCAGGAGTCCAGGACCTATTGTTACCACAGTAATGGACCAATGGTTGCACTGCAGACCAGCACACACATATTCTATGCTGATTTGGAAAGGCTGGCAGAATGCAGTGAGTATTTCAGGGCTTTGTCCCAGTCCTGCATGAGAGAAACTGAAGATCATCTAGTGAACCTGTCCCATGTACCGTCCAGAGTTTTCCACAGCCTCCTGCAGTTCTGCTTCCTACACAGATTCAGTGTACCAGATCACCTCATTGAGGAGCACCTTCGGGTGAGCACCTATCTGTTGGTTCCGGGCTTCACTAGTCGCTTGCTATTGGCCCTATCTGAGATCCTCACGGAGCGTACCTGCCTGGATTACCTACGGCTGGCTGAGGAGCTGTGCACTGATGAACTCCAAGAGACTGTGCTGGTCTACCTGAGCAAGAACCTTCTGGAGCTTCCTCGCCTGAACAGAAACCTGGAGCTCCATCTACAGCAGGAGCTTCTGCTGATGCGATCACAGGGCACCCCACAGCTGTGCTGCTTCAGGAAAGAGAACCTGATCTCAAGAGACAACCAGGAAACGGACCGTGCGAGGAGGCTGTTCAGATTAGAAGAGGAGGACTGGAAATGGAGCTCAGTTACAGATCTGCCTTTCACTGCAGATAAGTGGTGCTTCACCACAGCTGTCCTGTTTAATTACCTCTACATTATTGGGGGCTATCGGCACCACGCGAAAAGGGGGTATGAATTTAAGATGGCCTCCTTTCGTTATAATCCCTTGACGGATAAATGGGTGAAAACTGCACCTCTCATCAAgCATAGGAGGCACTTCAGTGCAGCCGTGTGTGAGGGTCATATTTACGCTGTTGGGGGCTGGTATCTGGACTCGCTGGTGACCCCCGACTCTACCACAGGAGTGTACACAGCTGTGGAGCGTTATGACCCGTGGGCAGACTCCTGGTCCTTCGTCTCCTCTCTCCCCCTCACAGATTTCCAGTTTACTCTTTCCCTTTCTCATGATTCCCCCCTTACCACCAGTCTAGGGACCTGTCTGTACGTGCTGGGCAACATCCAGAGAACTGGGGAGAAACTGGTGTTGCGTTATGATACAACCCAAGACAGCTGGAGTGAGCTGTATCCCACTCTCACTCGCGCAAGTGCCGATATCCCCATCCTCCACTTCCTGGGAGCCACAGACAAGTTGATCGTAATTGGCGGGAACAATTTTGAAACCGTTGTGACGTCCTTTTGTGTGGACACTCAGAAGTGGGGTCAGATCCGAAGCATGGAGAAAACTGCTCTGATTGGTCAAGGCACCGTGTTTAATGATGAGGTTTACATGTCAGGAAATCAGGAGGATGTAATCTTCCGCCTGGATCTCCaaaatctgtctttctctctgctccCTGCACTTCCTGTCTCCACGTACTACGAGAGCTTTTTCCACCTCTTCTTCTGAGTCATGTACTGTGATCCCTATCGGCTCCAAGCAGGAGCAACATAAGGGCGGGTACGGACAATATGTCATGCAAAGACTGTTgagtaaatatattgtaaagttGAAGGTCTTTTATAGGACACTGAGTAACTGATATGCTGGAAATAATAAACACTATTTGTAGATGTTC

Function

NR:

description
PREDICTED: kelch-like protein 28 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015601452.2 False 1963 mRNA 0.48 4 8509135 8513431
XM_022679553.1 True 2575 mRNA 0.45 5 8508404 8513431

Neighbor

gene id symbol gene type direction distance location
chkb chkb,LOC107577700 coding upstream 909 8494840 ~ 8507495 (+)
pgc LOC108440932,LOC108441008 coding upstream 33933 8466873 ~ 8474471 (+)
arsa arsa,LOC100304877,LOC102794702 coding upstream 76351 8423666 ~ 8432053 (+)
LOC103028908 NA coding upstream 206624 8291162 ~ 8301780 (+)
rabl2b rabl2b,rabl2,rabl2a,LOC107662875,LOC107600941 coding upstream 627444 7875024 ~ 7880960 (+)
cpt1b cpt1b,LOC100329197,LOC107599889,LOC107671150,LOC107686536 coding downstream 6587 8520018 ~ 8533167 (+)
prpf18 prpf18,LOC107671164,LOC107719961 coding downstream 41757 8555188 ~ 8565498 (+)
LOC111194761 NA coding downstream 306671 8820102 ~ 8826458 (+)
LOC103043520 NA coding downstream 317998 8831429 ~ 8836613 (+)
LOC103030146 impdh1,impdh1a,LOC108442450,LOC107559456,LOC107665545,LOC107710381,LOC107599814,LOC106561215,LOC103030146 coding downstream 331545 8844976 ~ 8871398 (+)
G157027 NA non-coding upstream 70135 8432614 ~ 8438269 (+)
G157022 NA non-coding upstream 146654 8361520 ~ 8361750 (+)
G157019 NA non-coding upstream 151327 8356218 ~ 8357077 (+)
G156917 NA non-coding upstream 647764 7846615 ~ 7860640 (+)
LOC107197493 NA non-coding upstream 658526 7846483 ~ 7849878 (+)
G157052 NA non-coding downstream 52998 8566429 ~ 8567668 (+)
G157054 NA non-coding downstream 54813 8568244 ~ 8568463 (+)
G157064 frmd4a non-coding downstream 90158 8603589 ~ 8608021 (+)
G157069 NA non-coding downstream 167378 8680809 ~ 8683103 (+)
G157210 NA non-coding downstream 378659 8892090 ~ 8894941 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other upstream 901736 7600567 ~ 7606668 (+)
LOC111194759 NA other upstream 1076836 7372376 ~ 7431568 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other upstream 1336779 7093507 ~ 7171625 (+)
G156188 NA other upstream 3351004 5157154 ~ 5157400 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other upstream 3871114 4575668 ~ 4637290 (+)
G157055 NA other downstream 56499 8569930 ~ 8570877 (+)
G157383 NA other downstream 1427398 9940829 ~ 9941805 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other downstream 2059312 10572743 ~ 10591523 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other downstream 2187357 10700788 ~ 10713982 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other downstream 2238268 10751699 ~ 10754698 (+)

Expression


Co-expression Network