LOC103039032


Basic Information

Item Value
gene id LOC103039032
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 30971172 ~ 30983860 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015602154.2
CAGTTCTCCACCGTTACCAGGGCTTCAGCTGGCATTTCCTGAACAAATCCACGGCCATGAAGGAGCTCTAAGCTGCTGGTGGACCTTCTACACCGTTCCTGTGCAGCTTTTTGCTCAGTTTTGTCTTCAGTGATGTGTGGACCTTTCTGTAGATGGACCACCGGAGCTTCTGAGGAACTCTGAGACCCCCATATTAGAGCAGGATCCCATTGATGGTGGCTTGAGGGGGCTTTCTTGTCGGACGGGCCGTTTCTCTGTTTGTCCATTTCTGACTTTTCCAGGCCTTCAGAAGGAGCCAGCATGAATCCGCTGTTCAAAGAGTACAAGAGCAAGGTGATGAAGACCCTCAACCCGGATGCAGAGGAAGAACCTGTTGAGGAGGTGTGTGAGGTGGCAGAAGAGATGACAACAGTCCAATCAGATGAAAGGCCAAGTTCTGTAACTCAACTCGCTAAAAGGATGCAGGGAGTCGGAGCTAAAGGGTGGAAAAATATGACGGCTCTCTTCAACAAAGACGATGAACACCAGCTACTGGAGGCAGAGACAGATAATCAGCCTGTAGCCGACCATCCGCTGGCAGTGAGGCCTGAGGAGCCGCCACGGCCAAAGCGCGGCACAGGATTCTGGGATAACTTTGCCACCAAGTGGCAGCAGGCAGCTGCCATGAAGCAGGCGGAGGCAGCAGCCGCTTCAGGGATGGAGGCAGGCGGTGAGGCAGGAGTGGAGCCGGAGGCAGATGGAAGGAGTTATGAAGATGGGAGTCAGGCAGGGATGGAGAATGAGGCAGAAGGAGGTGGGCGGGGCAACAGCTTCTCTAAGTACGCCTCTCTGGGCGGGGCTAACGATGAAGCGTCCTCCTTCAAATGGAACTTTGTCACCAGCAAACTGGCTGAGTTGAAGAGCAAAAGCATGACCAAGACCAACTAAACCAGCGAGACCAACGACGGCGGTGGATGAAGACTTCAGAGATGGAAACGAAAGAGCAGAAGCACCAAACCTCAGTCCACAGAAGCCACAGTGTGAAAATAGAGCTTGAATTCTACACAATTTTACACAATTCTACACACATTTTGCCGTTTCCATAAACATTGACCATTCAAGAAGTGCCTTCAAATTATTGACCAACCCAACAGTCATGCCTCCTCTCattataaatgacaaaaatccaTCTCTAGAATGTTGGTTTAACACAATTGGCTCACCCCATCCGCAACAGCCTCAaaaccatttatatatatatatatatatatatatattatcgtTCATGGTCAAGATAATGGCTTACAgcttacttttggcagtgttggcagggcaatgtgccaagtcctgctggaaaataaaatccacgtCTCTATAaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015602154.2 True 1359 mRNA 0.49 4 30971172 30983860

Neighbor

gene id symbol gene type direction distance location
LOC111194808 LOC102215143 coding upstream 170948 30798138 ~ 30800224 (+)
LOC111194807 NA coding upstream 298903 30661882 ~ 30672269 (+)
lysmd2 lysmd2 coding upstream 529296 30431447 ~ 30441876 (+)
LOC103035823 bcl2l10 coding upstream 868195 30090299 ~ 30102977 (+)
LOC103042250 gnb5,gnb5b,LOC107700591,LOC107588534,LOC107704270,LOC106562494,LOC106518983,LOC102225297 coding upstream 882462 30036411 ~ 30088710 (+)
slc9a1 slc9a1,LOC108256597,LOC107688187,LOC107671463,LOC107552533,LOC107564092 coding downstream 180178 31164038 ~ 31255308 (+)
znf385d znf385d,LOC107688204 coding downstream 397357 31381217 ~ 31514641 (+)
satb1 satb1,LOC107569796 coding downstream 704192 31688052 ~ 31802563 (+)
LOC107196951 NA coding downstream 1393241 32377101 ~ 32565890 (+)
LOC103041596 LOC108439295 coding downstream 1697882 32681742 ~ 32701604 (+)
LOC103039351 NA non-coding upstream 55922 30890333 ~ 30915250 (+)
G161775 NA non-coding upstream 125142 30845730 ~ 30846030 (+)
G161763 NA non-coding upstream 174345 30759344 ~ 30796827 (+)
G161754 NA non-coding upstream 274449 30695539 ~ 30696723 (+)
G161755 NA non-coding upstream 281228 30689715 ~ 30689944 (+)
G161797 LOC108426366,LOC108256083,LOC107552531,LOC107688188,LOC107707635,LOC107726719,LOC107671482 non-coding downstream 44128 31027988 ~ 31035682 (+)
G161808 NA non-coding downstream 115708 31099568 ~ 31190249 (+)
G161816 NA non-coding downstream 208421 31192281 ~ 31199747 (+)
G161818 NA non-coding downstream 235478 31219338 ~ 31220183 (+)
G161826 NA non-coding downstream 262221 31246081 ~ 31246877 (+)
dhdds dhdds,LOC106582847,LOC106605152 other upstream 76666 30854558 ~ 30894506 (+)
hmgn2 NA other upstream 92845 30875038 ~ 30878327 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other upstream 556960 30353686 ~ 30414212 (+)
G161331 NA other upstream 1854377 29070820 ~ 29116795 (+)
fam219b fam219b other upstream 2212165 28745696 ~ 28759007 (+)
efhb NA other downstream 600886 31584746 ~ 31605490 (+)
G162017 NA other downstream 1085002 32068862 ~ 32148190 (+)
G162032 NA other downstream 1252456 32236316 ~ 32295029 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other downstream 1730323 32714183 ~ 32719275 (+)
ss18l2 ss18l2,kiaa0355 other downstream 4824005 35807865 ~ 35814793 (+)

Expression


Co-expression Network