LOC103027681



Basic Information


Item Value
gene id LOC103027681
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 34213886 ~ 34217803 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_015604004.2
GCGAAGCAGTTGAGCAGAAAAGTGCGAGTGCTGTGTTGGGTCATGACGGCGCCCCAGTACCTGAAGACCAGAACTCAGCATGTCCGTGCGACCTGGGCTCAGCACTGCAACGCCGTGCTCTACATGAGCTCTGAGACCTCGGACTTCCCCACTGTGGGCCTCAACGTCTCCGAGGGCCGGGACCAGCTGTACTGGAAGACCATCCGCGCCCTCCAGTACATCCACACCCATCACCTCCACACCGCTGACTGGTTCCTCAAGGCGGATGACGACACGTTTGTTGTGATGGAGAACCTGCGGCGCTTCCTCTGCAGGCAGGACACTGAGCAGCCGGTCTACTTTGGCCACAGGTTCAGGGTTTTCATCAAGCAGGGCTACATGAGCGGTGGAGCAGGGTACGTCCTGAGCAGAGAGGCGCTGCGGAGGTTCATCCAGGGCTTCAGCTCGGGCCGGTGCACCCACACCAGCTCGGTGGAGGACTTGGCCCTGGGCCAGTGCATGGAGACCATGGGGGTGAAGGCTGGAGATTCCAGAGATGaggagcagagggaagcatttaACCCCTTCAGACCAGATCAGCACCTCCTAAATCCAGGCACCAAGAAACCAACCTTCGAATACAGCTACTACCCTAAAATACGAggCCCAGGCTGCTGCTCAGATTTTGCCATAAGCTTCCATTACATCAGACCAGAGCAGATGTATGAGCTGCAGTATTACACCTATCACCTGCATCCTTTCGGATACAAATACAGATTCAACCCTGCCGACACACTCAACTGCACAGCGGACTATTCACACAGTTAATACTCTAAACTAAAACGGGATTTTCTACATAACTCGGTGCTTATGATGTAAATA

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_015604004.2 True 861 mRNA 0.55 3 34213886 34217803

Neighbor


gene id symbol gene type direction distance location
LOC103028011 LOC108413592 coding upstream 14114 34176108 ~ 34199772 (+)
LOC111194818 LOC108413590,LOC105891915,LOC107592482,LOC108441798 coding upstream 52132 34118793 ~ 34161754 (+)
LOC103045871 cthrc1b,cthrc1,LOC108256451,LOC107726655,LOC105891862,LOC107592186,LOC107688280,LOC108413588 coding upstream 121149 34071159 ~ 34092737 (+)
LOC103027235 LOC107671459,LOC107688260,LOC108256161,LOC105891721 coding upstream 216442 33204707 ~ 33997444 (+)
LOC103043655 eif3h coding upstream 1170750 32918143 ~ 33043136 (+)
mios mios,LOC107671474,LOC107592123,LOC107592481 coding downstream 82215 34300018 ~ 34315224 (+)
LOC103044586 NA coding downstream 101410 34319213 ~ 34349880 (+)
pepd pepd coding downstream 589703 34807506 ~ 34839027 (+)
chst8 chst8,LOC108264314,LOC107668469 coding downstream 849515 35067318 ~ 35512777 (+)
kctd15 kctd15,LOC107668486,LOC107712586,LOC107594376,LOC106562374 coding downstream 1332089 35549892 ~ 35603715 (+)
G162405 NA non-coding upstream 10780 34202903 ~ 34203106 (+)
G162403 NA non-coding upstream 36659 34170400 ~ 34177227 (+)
G162373 NA non-coding upstream 116289 34093913 ~ 34097597 (+)
G162336 NA non-coding upstream 327042 33837477 ~ 33886844 (+)
G162329 NA non-coding upstream 416212 33797440 ~ 33797674 (+)
G162408 NA non-coding downstream 2309 34220112 ~ 34221336 (+)
G162442 NA non-coding downstream 181431 34399234 ~ 34399448 (+)
G162505 NA non-coding downstream 283797 34501600 ~ 34517219 (+)
G162518 NA non-coding downstream 437158 34654961 ~ 34655440 (+)
G162530 NA non-coding downstream 559404 34777207 ~ 34783691 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other upstream 1494611 32714183 ~ 32719275 (+)
G162032 NA other upstream 1918857 32236316 ~ 32295029 (+)
G162017 NA other upstream 2065696 32068862 ~ 32148190 (+)
efhb NA other upstream 2608396 31584746 ~ 31605490 (+)
hmgn2 NA other upstream 3335559 30875038 ~ 30878327 (+)
ss18l2 ss18l2,kiaa0355 other downstream 1590062 35807865 ~ 35814793 (+)
pygo1 pygo1 other downstream 1894239 36112042 ~ 36120402 (+)
ccpg1 ccpg1 other downstream 1914612 36132415 ~ 36169745 (+)
G162964 LOC108431875,LOC108413582 other downstream 2536382 36754185 ~ 36754687 (+)
LOC103046025 hcn4,LOC108263998 other downstream 3069364 37287167 ~ 37352779 (+)

Expression



Co-expression Network