dbndd1 (dbndd1,dbnd1,LOC106562278)


Basic Information

Item Value
gene id dbndd1
gene name dbndd1,dbnd1,LOC106562278
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 6324821 ~ 6363149 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015604453.2
GTAAAGACTTTTAAGTAgattgtgtttgttgtttttgttaggTTAGCGAAGCGAGGAAAcctttattaatgtatttgtttaaagtgctGACTATGAAAGTTTCTGGAAAGCCTTGCCAGGCTTATTTTGTGCTGAATGGCTGGGAGTGTGGAGGATAGGAGGATCAGCAGGCACAGAGGAGGTGGAGAAAAGCTGATAAGAGGAGTGTGTTCCTCGCTTGTGTTTTGGTGGGAGTTGATACTCGTACTCACAGCtgctccctctttctttctttacctcTCTGTTTGTATTCTGACTGCTCCACACCcatgctgctgctgtagccAGCAGCTCCACACTCTCGGCTTACTGGATGGAGGCTCAGGGAGGGGCATCCAGCCCAGATCCCAACAAAGATATCCAGAAACTGCTGAAGCCCTCCAGCTCGGGAGAACTGCCGAAAGAGCCGCTTCATCATCCCACGGGTGAGGAAGAGGCAGTTATCCTGGGACACACCCCGGGGCTGCTGCATGTCACTGAGAGAAGACAGCCCCTGAGCAGTGTGTCATCCCTGGAGGTGCATTTTGACCTTCTAGACCTGACAGAGCTCACGGACATGTCCGACCAGGAGTTGGCTGAGGTGTTTGCTGATTCTGATGAAGAGAACCACAACGACTCACCTGCAAgtcaccaccaccaccccctgcCGCTACACCGAAGCGGCTACATGCGCTCTCCCTCCTGGACACGCTGCAGCAAGAACGAGCAGACGAGGGACAGAAAGCACCACAGCGACTCGGACACCACCGACCCGCATCGCAAACTGGAGAGGCCCAAACAGCCCtgagaacacacactgacactggaGCGGCCCGGACAGCCCTCAGAGGAACACACTCGACACCTctgaccgacacacacacggcCGAGCCACGGGGACGTCCAGACCTGTGACGCTGAGGACGCTAATATGAGCTCTCCATGCTTTATTTATATGAAATGTGTCACTGCAGAAGCTGTGGGACAAACATCTCTCTCCATATTCATATTCAGTCTGGTCTATTACTTCTCAAGGGCTTTCTGTAGACTGGGATCTGCAGCTGCGATGTTGGAAGGCCTGGTTGGATTTTATGAAATCTCATTCAGAAACTGCTCTGGAATGCAGTTCTATGATGTTCAGGCAGACAGAGACGTCAAGGAAAACATCAAGAACTGGAGCTAAAATGAAAAGAATGGAGTGTTTTTGAGAGACAAGCCAAAAACGAATCACTGTATAATCCATTGCCTTTATAAAGTAACACAACAAACTGCTATAAGGAGTGATTGTAAACACAGCCCAGAGGctggtgtagtgtagtggataacaacacTGCCTTCTCCACTgcaaactttaaaaaatcaaGGTTTAATTCTAAACTACACACTTTTCTAACTCTACATTCTTCTGCCTGTGTAACCTGATTCTTATAATCACTAACAAGGACAAACCCCATAGAGACAATAGGTGGGATAGGATAAGTATTTGAATCAgaattttacatattaaattaattatgtataaattgcatttaatatactTCTAATATTTAAGTCCTTCCATAGAATAACCATAAATCAACCATACACAAATCAGccatttccattattttacaataaaaaaaattgatgtgcTTTATTAAGACATATATTTCTTCATTCatgaaaaaagggaaataaaataattattttttcacagAAAGGAAAAGTGGTTGATGTATGGTTACTTGTTGGAAGGCTAATTAAATGGCATAATTCATAAATTAGAATTTAACAATTTTTATTAGGTGGTTAAATTTGCtgttgaaaataaaatacatttaaaaatttaacattttttagattttaaaacagCTATTTGAATGTCGGTCCTGAGAGAGTACTATGATTCATCTAATTCAACTTCAAGCATTCTGACAAAACTGACTTTGACTTTGCCTAAATTaatatttctgcattttagaGCAGAGGTTTGATTGTATAgatgtaacatttatttagatAGAAATGTAACTTGTcaaatgtataatgtatttttaacattgttaaaaacagcattaacaTCTCACAAgctcaaaacaacaaaaaaaaaacctctagtTTATGAATtatgcaatatttaaaaaaataagaaatgtcatgttaataatatacaaaatataaaattcagCCTCTAAAAAAGTCAACCTAAACAAAGTTTGGCACTTTTTAAGCTCCATAAAAACGTTTTACCTCCAAAATGGAGGAAATGGAGCAGAAAAACCTTTTCTAACTTTTCAATTgaaatatttaagtcattttggagcatttgtaTTAGTCCATTAATCATGATCTctagctttttctttttgtggtGACACAAACACGGACACATATTTCCATAAATTTAAGCACAAGTCTTATAAAACACTGTTACTTCTCCTT
>XM_022679503.1
TCAGTAAAGACTTTTAAGTAgattgtgtttgttgtttttgttaggTTAGCGAAGCGAGGAAAcctttattaatgtatttgtttaaagtgctGACTATGAAAGTTTCTGGAAAGCCTTGCCAGGCTTATTTTGTGCTGAATGGCTGGGAGTGTGGAGGATAGGAGGATCAGCAGGCACAGAGGAGGTGGAGAAAAGCTGATAAGAGGAGTGTGTTCCTCGCTTGTGTTTTGGTGGGAGTTGATACTCGTACTCACAGCtgctccctctttctttctttacctcTCTGTTTGTATTCTGACTGCTCCACACCcatgctgctgctgtagccAGCAGCTCCACACTCTCGGCTTACTGGATGGAGGCTCAGGGAGGGGCATCCAGCCCAGATCCCAACAAAGATATCCAGAAACTGCTGAAGCCCTCCAGCTCGGGAGAACTGCCGAAAGAGCCGCTTCATCATCCCACGGAGCCCCTGAGCAGTGTGTCATCCCTGGAGGTGCATTTTGACCTTCTAGACCTGACAGAGCTCACGGACATGTCCGACCAGGAGTTGGCTGAGGTGTTTGCTGATTCTGATGAAGAGAACCACAACGACTCACCTGCAAgtcaccaccaccaccccctgcCGCTACACCGAAGCGGCTACATGCGCTCTCCCTCCTGGACACGCTGCAGCAAGAACGAGCAGACGAGGGACAGAAAGCACCACAGCGACTCGGACACCACCGACCCGCATCGCAAACTGGAGAGGCCCAAACAGCCCtgagaacacacactgacactggaGCGGCCCGGACAGCCCTCAGAGGAACACACTCGACACCTctgaccgacacacacacggcCGAGCCACGGGGACGTCCAGACCTGTGACGCTGAGGACGCTAATATGAGCTCTCCATGCTTTATTTATATGAAATGTGTCACTGCAGAAGCTGTGGGACAAACATCTCTCTCCATATTCATATTCAGTCTGGTCTATTACTTCTCAAGGGCTTTCTGTAGACTGGGATCTGCAGCTGCGATGTTGGAAGGCCTGGTTGGATTTTATGAAATCTCATTCAGAAACTGCTCTGGAATGCAGTTCTATGATGTTCAGGCAGACAGAGACGTCAAGGAAAACATCAAGAACTGGAGCTAAAATGAAAAGAATGGAGTGTTTTTGAGAGACAAGCCAAAAACGAATCACTGTATAATCCATTGCCTTTATAAAGTAACACAACAAACTGCTATAAGGAGTGATTGTAAACACAGCCCAGAGGctggtgtagtgtagtggataacaacacTGCCTTCTCCACTgcaaactttaaaaaatcaaGGTTTAATTCTAAACTACACACTTTTCTAACTCTACATTCTTCTGCCTGTGTAACCTGATTCTTATAATCACTAACAAGGACAAACCCCATAGAGACAATAGGTGGGATAGGATAAGTATTTGAATCAgaattttacatattaaattaattatgtataaattgcatttaatatactTCTAATATTTAAGTCCTTCCATAGAATAACCATAAATCAACCATACACAAATCAGccatttccattattttacaataaaaaaaattgatgtgcTTTATTAAGACATATATTTCTTCATTCatgaaaaaagggaaataaaataattattttttcacagAAAGGAAAAGTGGTTGATGTATGGTTACTTGTTGGAAGGCTAATTAAATGGCATAATTCATAAATTAGAATTTAACAATTTTTATTAGGTGGTTAAATTTGCtgttgaaaataaaatacatttaaaaatttaacattttttagattttaaaacagCTATTTGAATGTCGGTCCTGAGAGAGTACTATGATTCATCTAATTCAACTTCAAGCATTCTGACAAAACTGACTTTGACTTTGCCTAAATTaatatttctgcattttagaGCAGAGGTTTGATTGTATAgatgtaacatttatttagatAGAAATGTAACTTGTcaaatgtataatgtatttttaacattgttaaaaacagcattaacaTCTCACAAgctcaaaacaacaaaaaaaaaacctctagtTTATGAATtatgcaatatttaaaaaaataagaaatgtcatgttaataatatacaaaatataaaattcagCCTCTAAAAAAGTCAACCTAAACAAAGTTTGGCACTTTTTAAGCTCCATAAAAACGTTTTACCTCCAAAATGGAGGAAATGGAGCAGAAAAACCTTTTCTAACTTTTCAATTgaaatatttaagtcattttggagcatttgtaTTAGTCCATTAATCATGATCTctagctttttctttttgtggtGACACAAACACGGACACATATTTCCATAAATTTAAGCACAAGTCTTATAAAACACTGTTACTTCTCCTT

Function

symbol description
dbndd1 Predicted to be involved in negative regulation of protein kinase activity. Predicted to be located in cytoplasm. Orthologous to human DBNDD1 (dysbindin domain containing 1).

NR:

description
PREDICTED: dysbindin domain-containing protein 1-like

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015604453.2 True 2439 mRNA 0.40 5 6324824 6363149
XM_022679503.1 False 2379 mRNA 0.39 5 6324821 6363149

Neighbor

gene id symbol gene type direction distance location
foxf1 foxf1 coding upstream 19249 6301848 ~ 6305572 (+)
irf8 irf8 coding upstream 213815 6100753 ~ 6111006 (+)
LOC103030962 ds22a,LOC108434600,LOC105892932,LOC106562285 coding upstream 229153 6067215 ~ 6095668 (+)
LOC103031281 cox4i1,LOC103031281,LOC108412231,LOC107663352,LOC107731261,LOC107565335,LOC107572641 coding upstream 259288 6063252 ~ 6065533 (+)
gse1 gse1,LOC107565336,LOC107719882,LOC107661366 coding upstream 282318 5703096 ~ 6042503 (+)
gas8 gas8,LOC108276428 coding downstream 119670 6482819 ~ 6488287 (+)
LOC103042367 LOC108435537,LOC105906449,LOC101169526 coding downstream 368021 6731170 ~ 6759468 (+)
zdhhc7 zdhhc7,LOC108435925,LOC107705792,LOC107573093,LOC107736389,LOC107686620,LOC107662857,LOC107601043 coding downstream 445786 6808935 ~ 6817496 (+)
cog8 cog8,LOC107686577,LOC107573089 coding downstream 460480 6823629 ~ 6828644 (+)
wdr59 wdr59,LOC107686576 coding downstream 475729 6838878 ~ 6858524 (+)
G156402 NA non-coding upstream 7797 6313952 ~ 6317024 (+)
G156399 NA non-coding upstream 15201 6309372 ~ 6309620 (+)
G156397 NA non-coding upstream 16260 6308233 ~ 6308561 (+)
G156395 NA non-coding upstream 17401 6306725 ~ 6307420 (+)
G156340 NA non-coding upstream 207232 6117145 ~ 6117589 (+)
G156419 LOC108434843,LOC108264624 non-coding downstream 20118 6383267 ~ 6384043 (+)
G156431 tubb3,LOC107552791,LOC108272015,LOC108431516 non-coding downstream 46472 6409621 ~ 6412224 (+)
G156434 NA non-coding downstream 64915 6428064 ~ 6428293 (+)
G156435 NA non-coding downstream 66874 6430023 ~ 6430626 (+)
G156436 NA non-coding downstream 69248 6432397 ~ 6432862 (+)
G156188 NA other upstream 1167421 5157154 ~ 5157400 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other upstream 1687531 4575668 ~ 4637290 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other upstream 2392658 3929331 ~ 3932163 (+)
LOC111194753 NA other upstream 2710330 3611018 ~ 3614491 (+)
G155776 NA other upstream 3569709 2738361 ~ 2755112 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other downstream 730358 7093507 ~ 7171625 (+)
LOC111194759 NA other downstream 1009227 7372376 ~ 7431568 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other downstream 1237418 7600567 ~ 7606668 (+)
G157055 NA other downstream 2206781 8569930 ~ 8570877 (+)
G157383 NA other downstream 3577680 9940829 ~ 9941805 (+)

Expression


Co-expression Network