washc1 (wash1,LOC103045331,LOC107686618,LOC107564895)


Basic Information

Item Value
gene id washc1
gene name wash1,LOC103045331,LOC107686618,LOC107564895
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 7230927 ~ 7241982 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015604482.2
TCATGTGACTAGTCGGTGCGGAAGTTTTGATAACAGAGCTCATTTCAGTGCTGTGTTTATAGGCGATGCGAGGATTTTGTCGCTTTAGCTGCTTTAACTGCGTTATAAATGGTCAGgatgaCTCAGAAGTACCACTTGGAGGGACAGGTGTATTCTGTCCCAGTGATCCAGCAGGACTTGAGGAGGGAAGAGGCTGTGCACCAGATCACTGATGCTCTGCAATACCTGGAAAATATTTCAACAGACATCTTCACCAGGGTGTCGCAGAGTGTGGAAAAGAATCGCACTTACCTCCAGGCCGTCACAGACCGTATCAAACTGGCTCAAGCACGAGTCCACAAGATCAAAGGAAGCAAAAAAGCCACCAAGGTATTTTCCAGTGCTAAGTACCCTGCTCCAGAGAAACTAGAGGACTACTCCTCCATTTTTACAGGTGCTGTTGATCCTGCATCTCAGAAACGACCTCGCTACAAAATTCAGGGCAAGCTCCGCCCCCTGGATGACAAGGCCTTGCAGGAGAAGCTAAAATATTTTCCAGTATTTGTGAACACTAAGAAGCGCTCTGAAGATGAAACGGAGGAGGGGTTGGGTAGCCTGCCCAGAAACATCAGCTCAGTCAGCTCCCTACTACTCTTCAACACTACAGAGAACCTGTATAAGAAGTATGTGTTCCTGGATCCTCTGGCCGGGGCCGTCACTAAAACTCACACCACGCTGGAGAcggagaaagaagaaaagccaTTTGATGCCCCTCTCTCCATCACCAAGAGAGAGCAACTAGAGAGACAGACTGCAGAGAATTACTTCTATGTGCCAGACCTGGGCCAGGTGCCAGAGATCGATGTGCCCTCTTATCTACCTGACCTGCCTGGCATTGCAGATGACCTCATGTACAGTGCTGACCTTGGTCCAGGGTTTGCTCCCTCTGGTCCTGCCAGTGCAACCATCCCTGAACTGCCCTCGTTCGGCACAGATCACGAAGAGCCCAATGGACCTGGCTCCCAGTTTAGACCAGAGGCTCCACCCCcacctccgcctcctcctccacctcctcctcctgagCCAACTCATGTTCCAGGTCCTCCTCCTGGAGCTCCTCCAGCTCCACCCCCTcctcccccgcctcctcctgTTATAGCAGATGGCGCAGGAGGTGGAGATGCTTCCAGTCAGGCCCAGCCCACAGGTGCAGTAAAAGGTGCTCCTACAGAAGTTGTACAGCCGTCAGATGGGCGAGCGAGCTTGCTGGAGTCTATACGTAACGCCGGGGGCATCGGCAAAGCCAAACTGCGGAACGTTAAAGAGCGTAAGAtggagaagaagaagcagaaggagCAAGAGCAAGTTGCTGTGACAGCCAGTGGTGGAGATTTTATGTCTGATCTCTTTAATAAACTGGCAATGCGTCGGAAAGGCATCTCAGGTAAAGTCCCTGGGGGCGGAGACGCCACAGAAGCACCGCCCAGTTCTGGTAGTGCATTTGCCAGGATGTCTGATGTGATCCCTCCACTACCATCACCACACCAGCCAACCACAGAAGACGATGACGACTGGGAGGCATAGTGAATACACATGGACCTGTCTGCTCTGTACAGGCTGAATTTAAACAGCTctgaatgtagttttttttatgaactgAAAACAGGGTTAAAGATTTGAAGGTTTCAGCACTTCCTGGAAGAATGTTCGACATCTCATCCTGAGGCACTGTTTCAGCTGCAGTGTGGCAGAGAGGTACAGAAAACCAGATTCAGGGGAAGATGAGGCTCTGTAAGGACAACAGACTGTCAAAACAAATCTGTTCAATGCTCATCACTTTCTTAATCTGACCTGATTTAGTTTGTTTTGTATCCATGTGtgattattttactaaaaacgTCAATAAATCAAGATCATGGACTGAATTCACAAAAGCCctcctaaaaaaaactttaacctATGAACTCTTAAGATAGACACTAAAAGAGTGACAGATTGTTCTTAAATATGTTCAAAAAATATCTTAGTCTAAATTTTCTTTAGGCACTCTTTGTTGCTTTCTTgtgtataataaaaaatgaagctGCATATGTGCTGCATTTTACAGCTTATCATAAAAACGttacacttttaatttttcacTATTCAGTTATAATAAATCTGTGCAAAAAACTGGAGGGATAAACACAAATCAAGGGCTAAAACTGACACTAGAGGAAACAGGAACAACAGCACTTTGGAATGGAAAATATTGTCAACATTGACAAAATCTTAGAAATGGCAACtttattccaagtaattttgaagcatatctattggtctgtttatcATGAAATTGTGTCGTAATGTAACGAACAGCTAAGAAATTCACACTATgtttaaagtaaaagaaaaaagcaaagatAGAGATACAAGGATTTTTCTTGACATTAAGAAATGGTGGTGTCAGACATTGTTTTCCTTTATGTAGAAAGTACTTCAGTATCAGTAAAAACAATTTATTGCATTTGCTAATTCTTCATAAGAAAAAGTTTCTTCTTAAAACCCACTTTTGCAGTTTTCACAAAAATTCAGAAAATCACCAAAGTTTTCTAACTTGGAAATATGATGAGTTTACAAGGACAGTGGGCTTCATCATTATGAGAGGAGAGCAGTGAACAACTAAGGTTTAAACTTATAATTAATTCATGCATATCATGAATCAGACACACTTTTTCTGGGGCCCTTTCtcaaaaacagtttaaagaaATTTCTAAGGAAGTTTTTGGTAATACTTTTAATTCTATTAAATTATACATGAATTCTGTAAGTCATCTATTTAAACTGATGATAATTGGCTTTTTCATATCTTACACTCTAAGACTTAGTGTGAGATGACCCTAAAGTTGCTAGAcatagtttttattttccatttcaaatataaaaatatatcctAAAAATGAGTGTATGAAGTTAAGAGAAAAAGCACATCTATGAAcatctattctaatcatatcaCACTTGTGAATCCAGCCTTGGGATTTAAACAGTATCAGTATGGAATATGTGGCTGCCTGTATGAACCCTCAGACAGAGAAAAGCCAGGACCCTCAGCctcctttaaaaaaactgcaCAACTTGCATCTCCGTCAGTGTCCATCAACTGGGATTTATGAGTTTTAAGTTCCTTACACCCTGAGTGATAAATAGCCTGACTAAAGCTTTGTACATGTAAATGTGCTTCAACTGATGCAGCCCTAAAAGCTTTAGCCATGGGAGAATAATGAGATGGATATTGACAAGTGAATGAGAACGTCCAACATATGGATGAGCCTGGAAACAGATGCTGTATTTTATGTAAAGTGCCAATCAGAAAGCAGAAAGAATATCTGATTTACATATTGTTACTGTCAAAGTCTAAAGTTTTTGCGTCATTAGATGTCAGTGACAGCTGCCTTTTACACTGTGTGGACAATTGTGTTAAAAGAACCAACTGAATTTATGAAGTTAAGAATGTTTGGGACAGCAACAataaaaagcagcataaaaacaatatttctgtCATAAAATCTCAGTAAGCAGGAAATCCAAGCTTCCAGGCTGAGGAGCACTTGAACGTGACGTTtgtgtaattgctttttttacCCATTGGTTATTTGAATGGATTGTTCAGCCGTATTTTGATAAGTAGCGCTGTTTTTTGGAAAACTGCCACACATCATTTAGACACATTTTTATGTGCGATTAAGCATAAATGAGGTCCTTGTTCTGCATGTCTAAAGCACTAACTTTTTGTGTACTGCAGCTGCTCTgagatatacaaataaataaatgctgattTGTTA

Function

symbol description
wash1 Predicted to enable alpha-tubulin binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation and retrograde transport, endosome to Golgi. Predicted to act upstream of or within protein transport. Predicted to be located in cytosol; early endosome; and recycling endosome. Predicted to be part of WASH complex. Orthologous to several human genes including WASHC1 (WASH complex subunit 1).

NR:

description
WASH complex subunit 1

GO:

id name namespace
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0055038 recycling endosome membrane cellular_component
GO:0031901 early endosome membrane cellular_component
GO:0071203 WASH complex cellular_component
GO:0043014 alpha-tubulin binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K18461 WASH1; WAS protein family homolog 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015604482.2 True 3803 mRNA 0.42 11 7230927 7241982

Neighbor

gene id symbol gene type direction distance location
LOC103039382 otogl,LOC107736094,LOC107686601,LOC107662850,LOC107600679 coding upstream 143344 7031903 ~ 7087583 (+)
LOC103045026 LOC108424689 coding upstream 204982 7017514 ~ 7025945 (+)
LOC103044721 zfhx3 coding upstream 246790 6947453 ~ 6984137 (+)
LOC103038759 glg1,LOC107686575,LOC107705797,LOC107573092 coding upstream 300525 6871861 ~ 6930402 (+)
wdr59 wdr59,LOC107686576 coding upstream 372403 6838878 ~ 6858524 (+)
fkbp4 fkbp4,LOC107735478,LOC107662895,LOC107686573,LOC107705800,LOC107564896 coding downstream 21881 7263863 ~ 7271911 (+)
LOC103040627 NA coding downstream 32971 7274953 ~ 7315555 (+)
c2cd5 c2cd5 coding downstream 82518 7324500 ~ 7358192 (+)
LOC103040931 LOC108437435,LOC107564898,LOC107686567 coding downstream 116302 7358284 ~ 7371895 (+)
LOC103026191 dnaja2l,dnaja2,LOC103026191,LOC108438176,LOC107735561,LOC107705812,LOC107686561 coding downstream 204161 7446143 ~ 7454434 (+)
G156623 gcsh,LOC105912338,LOC107662900,LOC100702337,LOC107564915,LOC102203905,LOC102786853 non-coding upstream 200219 7026598 ~ 7030708 (+)
G156562 NA non-coding upstream 361363 6868260 ~ 6869564 (+)
G156523 pdpr,LOC106595780 non-coding upstream 456195 6768942 ~ 6774732 (+)
G156499 NA non-coding upstream 559733 6670921 ~ 6671194 (+)
G156451 NA non-coding upstream 729753 6499851 ~ 6501174 (+)
G156697 ddx11,LOC107686596 non-coding downstream 3782 7245764 ~ 7248460 (+)
G156731 LOC108437702,LOC108264175 non-coding downstream 110015 7351997 ~ 7412688 (+)
G156824 utp15,LOC107559694,LOC107686557,LOC107662854 non-coding downstream 311671 7553653 ~ 7558957 (+)
G156856 pdp2,LOC108423909 non-coding downstream 510221 7752203 ~ 7755664 (+)
G156916 NA non-coding downstream 594773 7836755 ~ 7938030 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other upstream 59302 7093507 ~ 7171625 (+)
G156188 NA other upstream 2073527 5157154 ~ 5157400 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other upstream 2593637 4575668 ~ 4637290 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other upstream 3298764 3929331 ~ 3932163 (+)
LOC111194753 NA other upstream 3616436 3611018 ~ 3614491 (+)
LOC111194759 NA other downstream 130394 7372376 ~ 7431568 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other downstream 358585 7600567 ~ 7606668 (+)
G157055 NA other downstream 1327948 8569930 ~ 8570877 (+)
G157383 NA other downstream 2698847 9940829 ~ 9941805 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other downstream 3330761 10572743 ~ 10591523 (+)

Expression


Co-expression Network