LOC103044837


Basic Information

Item Value
gene id LOC103044837
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 2882827 ~ 2938070 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015606067.2
ACAGGCTGGATCTTCAGAGTGGCTGGAGCTGGGCTGGAGCCGATGTGCTGgtgtagtttgtgttttttgtggtgtttttaagtaatttttccACTTTTTACTGAAACCTGTCTGTctgagaaagaggaggagaacgCTTTCAAGCTTTTATTCTTCATCTAAACTGAACCCTTTCCGTAAGTCATGAGTCTCCGCAGGGACACAAGAGCTTCATGACTGGGGAAGATCTCTGAGCTTTCACTGGATCAGCTGAGACAGACCACTCTACACCCAACAGCTTAACAGACAACACTGCAAACATGTTGGACACAGACAGATATGCCTGCAAGAAACGGAAGAAGCCCGCTCAAAAACAAAAACCAGCGGATGAAGTTGCCAAGTCAAACCCATCAAAGAGGCACAGGGATCGGCTGAATGGTGAACTGGAGCGTCTGACCAACATGCTTCCCTTCAGCGAGGACGTACGCTCTCGCCTGGATAAACTCTCCGTCCTGCGCCTCAGTGTGGGATACCTGAAAGCTAAGAGCTTCTTTAAAGCCACCATGAAGAAAAACAGCTTAGAGTTTCCCACAGGAAATGGGCTTAATATCAGCCGACTGGACGGCAGGGACTTCTCAGAGGGTGACCTTCTCCTGCAGGCTCTGAATGGGTTTGTGTTGGTGGTAACTGCAGAGGGATACATCTTCTATGCATCACCCACCATTCAGGACTACCTTGGCTTTCATCAGtctgATATGGTCCACCAGAGCGTCTTTGAGTTCATTCATGTTGATGACAGAGCCATTTTCCGCAGGCAGCTTCATTTTGCACTCAACCCAAAGAGGTCGGACACGGACATGGAGAGTGATGGTCTGGAGAGCAGCAGTGACATCACAAGAAATATTGAAACCTACAACCCACAGCATATCCCACCAGAGAACTCCTCCTTTCTCGAGAGGAGCTTTGTGTGTCGTTTCCGATGCCTCCTGGACAACTCATCTGGGTTTCTGaaactgaacttcCAGGGAAGGCTGAAGTTCCTCTTGGGGCAGAATGAGAAAGCTGAGAATGGGTCCCTTATCCAGCCACAGCTTGCGTTTTTTGCTATTGCCACCCCAGTTCAGCCGCCGGCTATTCTGGAGATCCGTGCCAAGACACTGATATTTCAAACCAAACATAAGCTGGACTTTACTCCTTTGGGCATTGACTCCAGggGTAAAGTTGTACTGGGTTACTCAGAGATGGAGCTGTGCATGAAAGGATCTGGATACCAGTACATTCACGCTGCCGATATGATGCACTGCGCAGACAATCACATCAGAATGATAAAGACGGGAGAGAGTGGGATGACAGTTTTCAGACTGTTAACAAAGAATGCAAAATGGATTTGGGTCCAGTCCAACGCAAGACTTGTGTACAAAGGTGGACGTCCTGACTTCATTATCGCTCGCCAGCGAGCCCTGGTtaatgctGAAGGAGAGGAGCACTTGAGGCAGAGAAGACTACAGCTTCCCTTCCCGAGCCTCACCACTGGAGAAGCAGTCCTCTATGATCTTTCTTCTCCTCTGGATGTAATGAATGCTGAAAGCACAAAGATGGAGTCTTCCAAGCCTTTGGAACCAAGCTCCATGCTTGCATCCTTGCAGAGACAGGACCAGTCCATCTACCAGCAGCCCACCGAGCCGGAATTTAGAGTGGATGACGCCTTCATGGATAGCTGGGCTCTTTTCAATGTGCCCAGTAAAGTTTTGCAGGATAAGAccaagaaggaggaggaggacagtGATGTGTCCTTGAATGATGCTTTGGAACTGTTGGCTCAGGATGGAGACATTTGTACGACTCTTCAGCAGATGGAGGTGGATAGCATGGTGCTGAAGGAGTGTGAAAATGCTCTTCTGAGGATGGCTACTGAAAGCAGTGGTAATGAGAAGAACCTGAGCTTAGATGAAATCCTCACTAGTAACATCTTCTCTTATGTGGAGGGAGCTGTTTATAAGGAAATCAGTAAGGGTCCTGTACCACAGGCTAATCtctcagcatcagcagcaggagcagaagTCAAAAACAGTTCATTTGGAGTGGATTCTGGACAGTACTCTACTACAGTGAACTCTGGATCTGGATTCTCCACAAATCACAGCTTTGATAGCACATTGgaatttgtggaaattactggGCAAGACATGGGCGCAATGGTTAGTGCACCTGATAAGTCTCAGAGACTTTCACATTCCAGTTTAAATACAGTGGGGTTTGTTCCAGTGCATGAGGCCGATACAACCCCAAGGAAAGGTCTGAATCATCTATCACTTACAGGCCAGACTGAATTGTTCACTCAGTTTCAGAAGAACTTGAGTCAGAACACCGCACCAAGCACCTTCAACACAATCCCTTCCAATGGTTGGGAAAACGTCCCACAGCAAAATGTCCAGGTCCAGAATGGTAAAACGCAATTATCTGCAAATTATCTGTCTTCTTGCCAGATCAGGTGTTATCCTGGTAACCATTCTGAAAACTCGGAGCTGAATCCTTTACAAAACGGTTTTCATCAGAAAAGCCAGCCAACCTTCAACCACCAGAACAACCACATAGACAAAAGAAATCATAGTCCTTCCTTGTCCCCTTACAATAATTGCATATCCTCCTCAAGCAACATTCACACGTGCCATGCGCCAACGGATCATCCGGCAGCCAACCACTGTTCACCACTCAGCAGCTGCATGTATGAGAGCCAATCTCCGCCAAGTACAAATACAGACTGGCTGCATCCTCAGGCCCAGGCAGTGACCATACCATCATGCTCCAAGGAGACACTTCCTAACAACCAGAGCCCACCGCAGGCATCTTGCTATTTCCAGTGGATGCCCAATGAGCCAGTGGTGGGCACATCCTCCATTCCACAGGTGGATGTTTGCATCAGTCCTCCTTTGTGTCACACCTTACCTGGTGTCACTATCAACAACAACCAGGAATACCATGGACATAAATGCAATGGACATACACAGGATGAAGTATTCCACACTGGGGAATACAGCTCCTGGTTTTCCATTCCTCCACACATTAACGGAATACACGTTCCTGAGAACAGCAGAGCCAGCTGCTGCAAGCTCTGAGATTCTTCAACATCAATGGACTTCAGGGTTTCTACTAAGAATGACCTTTTAATGAATGTTAAATCATAAACATTCTGTTATTTAGTAAAATGCTAAATGTGGGCATTAATAATGGAAATAATGTTCAGCACAGCCCCTTCTACAAATACATCCGGCCCAAATTGGTGCCATGATTATCAAATGAGTGTTAGTCAAAGGAAACCACTTTATATGAAAGTGACGTATATTTTTAGATATTGACTTTAGATGACTGAGTAGGGAAAAGCAGGCACTACCTAACAGGTTTAACcgctaaattattataattatttgaaTTCTAAGAgtatttgaaaaaagcgattttttatatatatattaaagggGTTAATTGTAACAAGATGATTGTAACTTGTAACTAAAAGTCTGATGAAATTATGCAAACACagttaatttagttttagttagtatTTTTGACACggataatattacatttatatagcaATAAAAGACTgggcaaaatatatttaatatgtataatactatgtggttttaaatgtgtattttttcccatttccaATTTAGTACAAGAAAcaaattatcaaataaaaatgagcTGTTTTTGACACTTGACCTAAATTGCCTCAATTTTATTACCACTGATGGTTATTAAAAGCCTTTGTAACATAGATTAGATAAATTCATAGGGCTATAAATCATATCTGCAGGGATATAAAAAGTTGACCAGATGTTATGTAACTACATGAAAAGACAGTGTTACCTTTCACCCccattgtgttgtgtgttattgAATGTATTGGGTCTATTCCATCAAATTCCCTACTTTTGCTATGATCCTACCAGCTTGTATCTGTGTAATATTGGAAGTTTATAAATGCACTGTCATTTCAGAGTGGCCTATGCAGGCTAAAAGCTTTCCACTGAGACCAATGTGCACAAATATCCATACAATATCCTTCATATTTTTCTATCATAACTTTTATTATTGAGAAATGTGGTTATGTGATTACATGGAataagattacatttttttcttcatttaaaaatcataccCAGTGTAATTCTATGAAACGCAACAACAGCATGACTCTGGAAATATCTGTGttgaacatatattttatactgcAGAACCTATTTACTCTACCACAGCTCTTTATTATTTCCCATGGATTTACTGTGATGTAATTTGATCTGGTTATGATGTGTATACTGGCATATGAAATCtggattatatatgtttatatataaaaataaatttaagtgCAGTGCC

Function

GO:

id name namespace
GO:0009636 response to toxic substance biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0071407 cellular response to organic cyclic compound biological_process
GO:0071466 cellular response to xenobiotic stimulus biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004874 obsolete aryl hydrocarbon receptor activity molecular_function
GO:0004879 nuclear receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015606067.2 True 4362 mRNA 0.43 11 2882827 2938070

Neighbor

gene id symbol gene type direction distance location
parp9 NA coding upstream 76073 2792039 ~ 2806754 (+)
lrch3 lrch3,LOC103027580 coding upstream 161868 2671503 ~ 2720959 (+)
tspan4 tspan4,tspan4a,LOC106561924 coding upstream 977113 1692598 ~ 1905714 (+)
LOC103036983 NA coding upstream 1209633 1662978 ~ 1673194 (+)
LOC103036673 NA coding upstream 1223865 1652654 ~ 1658962 (+)
ndufa10 NA coding downstream 4704 2942774 ~ 2963551 (+)
LOC103025504 LOC108425960,LOC108266765 coding downstream 920436 3858506 ~ 3899215 (+)
LOC103036562 hipk3 coding downstream 1039682 3977752 ~ 3999462 (+)
LOC103036857 LOC108433503,LOC108264854 coding downstream 1070256 4008326 ~ 4123480 (+)
LOC103029469 spon1,spon1a,LOC107741890 coding downstream 1358249 4296319 ~ 4510540 (+)
G155809 NA non-coding upstream 54553 2827596 ~ 2828274 (+)
G155793 NA non-coding upstream 102456 2780128 ~ 2780371 (+)
G155792 NA non-coding upstream 102944 2779587 ~ 2779883 (+)
G155785 NA non-coding upstream 111974 2770090 ~ 2770853 (+)
G155765 NA non-coding upstream 148163 2734462 ~ 2734664 (+)
G155854 NA non-coding downstream 52889 2990959 ~ 2991367 (+)
G155856 NA non-coding downstream 77634 3015704 ~ 3035326 (+)
LOC111194715 NA non-coding downstream 91505 3029575 ~ 3030986 (+)
G155866 NA non-coding downstream 181965 3120035 ~ 3121160 (+)
G155956 NA non-coding downstream 738562 3676632 ~ 3676857 (+)
G155776 NA other upstream 127715 2738361 ~ 2755112 (+)
G155491 akt2,LOC107711004,LOC107557843,LOC107692744,LOC107572728,LOC107714435,LOC108264340 other upstream 1604565 1187146 ~ 1278262 (+)
LOC103036073 LOC106581333,LOC102227031,LOC105940324 other upstream 1659477 1203741 ~ 1223350 (+)
LOC103044527 NA other upstream 1776035 1103450 ~ 1106792 (+)
G155206 NA other upstream 2729564 149347 ~ 153263 (+)
LOC111194753 NA other downstream 672948 3611018 ~ 3614491 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other downstream 991261 3929331 ~ 3932163 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other downstream 1637598 4575668 ~ 4637290 (+)
G156188 NA other downstream 2219084 5157154 ~ 5157400 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other downstream 4155437 7093507 ~ 7171625 (+)

Expression


Co-expression Network