arid3b (LOC108439030,LOC108264089)


Basic Information

Item Value
gene id arid3b
gene name LOC108439030,LOC108264089
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 28768606 ~ 28859096 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015606482.2
tgGATAActcaagcagcagcagcagagcgcAAATGGAGGGCAGTTTAGGGGGTGGTTACTCCCAGGGGGGTTCAGCAGGAGTGAAGCTGGAGGCTGTGATGGAGCAACTGCAGAGGCAGCAGCAGGCGCGGCTGGAGATGGAGCGTAAAGAACGGCGAATCCGAGAAGCCCACATCATGTATGCCCAGCAGGTGGCTGCCCAGCAGGCCATTCTGGCGGCGGCCCGAGCTTCAGGTGTTGGTCTGGCCGGCAAGATCCAGGGGCAAACCAAAATGGATTTGCAACGGGACAATGGGGAAAGTCTGGGCCGGGACTCGGATGATGATTCGGATGATGATAACGATGCTGCTGATGATGACAATGATGAGGAGATGATGGATGGTGATGAAGGCAGTGATGAAGAGGATGGGGCAGTTAGTGGGTTGGAGTTTTTGAGAAAGCAGACGTTGGCGCTGCAGCAGGGCGCTGTTCGGTTGCAGGGCCATCCGTTTGGGAGCTACACCGGGACACCAATGCCAGCACCAGCACCCAGGACCCAGAGAGAGCCATCACCTCCGGTTAAGGTCAAACAGGAACCCGAAGATGGGCTTTCTCCGGTGGGTCCGCGGTCAGCCACATCCCCTAATGGCCAGGCTGACTGGGGCTACGAAGATAACTTCAAACAGAATGGAGGTGGTGGATGGGGCGAGGAGTCGGACAGCAGCAGAGCAAGAGGAGAGGCATCCAGAGACTTCGCTAAGTTGTATGAGCTGGACAGTGATCCCAACAGAAAAGAGTTCCTGGACGATCTCTTCACTTTCATGCAGAAGAGAGGTACTCCAGTGAACCGGATCCCCATCATGGCCAAGCAGGTGCTGGATCTGTACATGCTGTATAAACTGGTGACTGAGAAAGGGGGTCTGGTGGAGGTCATCAACAAGAAGATCTGGAGAGAAATCACGAAAGGCCTGAACCTGCCCACCTCCATCACCAGCGCAGCCTTCACACTCCGCACACAGTATATGAAGTATCTGTACCCGTATGAATGCGCTCGGAAGAGCCTGAGTTCGCCCAATGAGCTGCAGGCCGCCATCGACAGCAACCGCCGCGAGGGCCGCCGACCCAGCTACAGTAGCAGCGGCCTGTTCCGCTTTAGCCCCTCCCCCAGCGCCGCCGCGTCACACCTCCTCTCACCTCCCAAAATGCACCTGGCTGCTTTGAGCTCTGGAGCAGCAGCTGTGGGGGCTCTGAACGGCCTGCAGGGCTCCCCGGGACCCTCCATCAAAAAGGGGCTGGAAGAAGCCTCCCCCTCCCTGCTGGCAGCGCGAGCCCCCGCCATGGCACTAGCTTTGGGTCCACAGCAGGTGGCAGGTCTGGCCCGGGCAGCTACTCTGGAGCAGCTGCGGGAGAAGCTGGAGACGGGCGTCGGGGCTGAGGGTCCGGAGAGGAAGATGGCCCGTCTGGCTGAGGAGCAGCAGCGGCTGATGCAGCAGGCCTTCCAACACAACCTGCTGGCCATGGCCTCACAGATGCCCATGAACCTGAGACTGGGCATGCCACCAAAGGAAGAAAAGCACGACCTGGCCATGAGCATTTCCTCCACCGGAGCTGCCAGCATCAGCGTATCTGTGGAGGTGAACGGTGTCCACTACTCAGGAACGCTGTTTGCTCAGAAGTCAGCATCAGTTCCAGTGAGTGTATCCACTCCAGTGAGTGTGTCTGCTCCCGTGAGTGTGCCCCACTCAGCTCCAGTTGTGGTTCCAAGCGCAGTCTTCAGCTTCCCCAGCCACAGCccatcctcttcctcctcctctaaGGGCCCAAGCTCAGCAGAGCCCTCCGCCAGCAGCTCACCATAACacagcctgctgctgctgcccggGCTCCATCCTGCTCCAGGCCAGAACAAACCAGTCATGGATGTTTTGAAAATCAAACTGTTGCACAACCAGTACCTCATTTTTCTCCTGTCTGCCTCGGCTGTCTCAACATGTTCAGAtaatcaatacacacacacacacacacacttaaacagaatactcatatatatgtacacacacactcagaaacgcacacacacgcatctatacactcacgcacacacattctcacacagtGCTAAGGAAAACGCTAAACACAATCATAAGAACATTCAGCCAAAATCAACTGACAGGTGTTCATAACAGAACTTGAAGATTtttatttagagaaaaaaagtgtttgttgcTATTTGTTGTCTTCTGatttttttgggtgtttttgtttttgaatatttgaattattatttcttttcctcttgagttttttttctctttttacataCGTCAAATCAAACAATCCACAGCGGTTGAATATATATTACAAGAATACCTTTACCTCAGGAGCTTGTTAGTAAATACTTTAGCTgaatgaattttattttttataatctatttgaatttatctgattcagGAAAAAGAGCGATTGTTGCGTTCCTCGCCCGGGAAGAGACGTCGCTCACTTTTGTTGCTATGCATTCACTTTTTCCTCTGTGGGGCAAGTTGCCGCAATGATGATGGGCTGTGAACACATTCGGAAGAACGTAATGGAGAAATCTGAGAAAAGGAGAGGATGTTCTGATTACATCTCCAGCTTGAGACAACTTGGACAAGTTGCAACTTGGACAATCtgttggatttttattttatttttatttttttctttcaaacttCCAATTTTTATAAGCTGTTTGACCTCATTGCCGAATCAGATCACTCAGGTTGAAGCCACCTTGTGCTGAGGAAGCTCTAAACGGCCTGGACTTCACAATCACCTACCTCCAAATACctcatacatatacatatacatccCCCTCTCCATATTCCAGTGTTGTACCCAGTGATCTGCATGTTTTATTGGTTTCCCTTCTTTAACACGCCCCCTGCCACTCTAAAGACCTTAAAAGGGCATGTTAATGAACTTGTTGATGATtggttgaatcaggtgtgtagGCAGAAGGGGAATCAGTAAATACACAGGGCAACGTGCTTTCAGTAAGGGTTTAGGAACACAGCCCTAGCCAAACCAATGGCAGCTTTTGAAGTTTGTAGCAGTTCTGATCTTGTTTAGTGTTGTCTCATCAGAACCTCAGAAGTGAATTCAGTATTTCTGACCAACAGATTAATTTTATTAACTGTTATTACCAAGTTTATATTCAAATTTGGACTGTACAATTCCATTCATTTTAATGAAAGCTGCTCCagtttcagatgtttttttacCTCAGTAAACTTCTTTGGGGTATTGGGTCTATAGTTCAGGTTGGATTTGGTCAATTTCAGTTTTATCAAACTATCATAGGGATATCAAATCTCAAACCAAGTACTGCAACTCAAATCTAATCATTTGTTGAGTGCAAGTCTCATGATAAGCTGTATAAAATATCGCTGCTGTCcagtaaaaaacatatatctcgATCATTTTACCTTTGTGGCTGCGCTGTACACTGTAGTTGAATAGAAAGGCTATATAATAACTTAGAaatgctgtttattttatattgacttccattcaaATTTAGAGAAAAAACAGCTTTCTCTTGTAAAGTCACCATTTTGAaggtaaatatttatttctttggaCAGTGATATACAGCAGTTCCCACCCAAAGCACAATGAAGACTAGACACAGTTTAACGCAGTTACCACTTAACCACAGCTGTTCAGTAGTCATCAAGCAGTTAAAGCCCTTTCCTCTCCAACACACGGCTCAGAACCTAAAGACTGTGGCTTTAGAACCTCAACCAAATAGAACAGCGACCATAGAAATCTTACCAATTTCAAAGGATTGATTCCAATGGAATGATGAGTTGAGTTGGCTTCAGGCCATTCCACATATTGGAGTTTTGCTGTTTGAACATGGCAGAAATCCCTCGAGTCTCTCTACAACCCCCTCAAAGTGTAAGGGatgcaatttaatattttatttgagtttattttcattctttttcttttcttttcttttttttgagtttGTGTAGTGCTAGTGTATTGTACCAGATCAGGGAGGGTAAAGTTTTAACAATCTATAACTGTAACAAAAACACCATTTCATACCTCAGCAACTTTTGCCTCTCGTGATGGGAAGGCAGTTTTCTCAGGAAGTGACGTCATTCATTGGAGTCACATggtcaacaaaataaaaaaa

Function

NR:

description
PREDICTED: AT-rich interactive domain-containing protein 3B-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015606482.2 True 4166 mRNA 0.47 9 28768606 28859096

Neighbor

gene id symbol gene type direction distance location
dhx36 dhx36 coding upstream 382189 28300719 ~ 28386417 (+)
gpr149 gpr149 coding upstream 485288 28255972 ~ 28283318 (+)
LOC111194790 LOC108434085,LOC108264118,LOC108434032 coding upstream 572892 28185750 ~ 28195714 (+)
LOC103044051 LOC108434085,LOC108264118,LOC108434032 coding upstream 583699 28180682 ~ 28184907 (+)
LOC107196882 LOC108434085,LOC108264118,LOC108434032 coding upstream 590620 28173610 ~ 28177986 (+)
LOC103037946 LOC108439022 coding downstream 95621 28954717 ~ 28969395 (+)
LOC103022881 LOC108439021 coding downstream 158964 29018060 ~ 29063139 (+)
LOC103023184 NA coding downstream 274532 29133628 ~ 29143190 (+)
LOC103038575 LOC108439020 coding downstream 293200 29152296 ~ 29159185 (+)
LOC111194800 NA coding downstream 340353 29199449 ~ 29200211 (+)
G161302 NA non-coding upstream 4563 28668173 ~ 28764043 (+)
LOC111194802 NA non-coding upstream 116297 28643321 ~ 28652309 (+)
G161243 NA non-coding upstream 374578 28366168 ~ 28394028 (+)
LOC111194734 NA non-coding upstream 733411 28030613 ~ 28035195 (+)
G161129 NA non-coding upstream 875129 27893087 ~ 27893477 (+)
G161314 NA non-coding downstream 27346 28886442 ~ 28886800 (+)
G161312 NA non-coding downstream 27876 28886972 ~ 28889126 (+)
G161313 NA non-coding downstream 30274 28889370 ~ 28890244 (+)
G161414 NA non-coding downstream 343257 29202353 ~ 29202589 (+)
G161417 NA non-coding downstream 348867 29207963 ~ 29208290 (+)
fam219b fam219b other upstream 9599 28745696 ~ 28759007 (+)
G161292 rap2b,LOC107757383 other upstream 143821 28622128 ~ 28624785 (+)
c18h3orf33 NA other upstream 972102 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 1649342 27109671 ~ 27119264 (+)
G160919 ptx3 other upstream 1860979 26905244 ~ 26907627 (+)
G161331 NA other downstream 211724 29070820 ~ 29116795 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 1494590 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 1995462 30854558 ~ 30894506 (+)
hmgn2 NA other downstream 2015942 30875038 ~ 30878327 (+)
efhb NA other downstream 2725650 31584746 ~ 31605490 (+)

Expression


Co-expression Network