lysmd4


Basic Information

Item Value
gene id lysmd4
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 20745568 ~ 20751796 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015607162.2
CTGTGAAACGCTTATCTGTTTAAAGCTGCAGTTTCTGCGAGCCATTTAACTTTTTACTACATACGAATAAATCCTCTCTGGTAGTTTACGACTTGTAGATCTGCGTCGCTCGGCTGCGCCTATGAGAGCCGGAGAGGGGCGTGGCCGTAAGAGAACAGGCGGTCTTGAGCTGCGGTGTGATTGGCTGTGGTTCCTGTCAGTCAGGCCGCTGCCCGTGTGTAAACAAGCATGTTCAGCTGTGACCTGAACTTTCTCTGGTGCGCCTTGGAGTTATTTTTGTCACATTATGTAGCTGTTTTTTTAACTCGTTAAGAGATGCGGCGTGGGGATTCTCTCCCCCAAGCCTTTCAGGCTCCAGTAGACGTGCATGCCAGTGAGGATGGGCAGGTGTACATGTTCAGAGGTAGACAGGAGGATCTGGAGGCCTCCTCAGAAGAAGAGGAGCTCAATGCCATGGAGCTCCGCCCACGGTACCGGGAAACTTCCTCCCAGGAGCGAAACGGAGTGGgagaactgctgctgctggagagaAAAATCTCACATGAGGACAACCTCTACAAACTGGCCCTGCAGTACGGATGCAAGGTGGCTGACATTAAGCGAGTGAACAACCTCATCAAAGAGCAGGATCTGTATGCGCTGACCTCCATCAAAATCCCTGTGAAGAAGCATGGCCTGCTAACAGAGACTAACTCTGAGCTCAAGGAACCTCAGCAAAGACCTTCTTCAAGTCCATCACTGCCACCTCCTGCTCAGCTGCAGGAACTTGCTGGGGCTGATCCCTCTGCCAGGCCTCGAGTGGAGGAGTATACTCACTTTCTCAAAGAGGTGGACAATGACATTGAGCGCCTGATCCAAAGCACAGAGGCTCAGGAGGAGGTGTATGGAGGCAGCTCTGATGGAACCAGGCAGTGGGGCTCAAGGGGCAAGCGCTTGACTAACTCTGGTGCGGACTGGGGCATCCAGTGGTGGAACGCTGTGATAGCCATGTTGCTCATTGGTATTGTCTTACCAATCTTCTATGTAGTGTACTTTAAAACTCAAGACAGCGGAGAGTCTGCGGTGAATAATGGAGTGGTAAACAGCACCGTGGCTACCTCAAATAATTCAGGAGCAAGCTTCAGTACCACTAACCCTAGCAGTTTGATTAAGAGCCATTTGGACAAACCATAGATGGATACACTGCATACCTGCAGTGAAAGACTAAATGCAGACCTGTTTGAATTCAGAGAGctatatagatatacagtaaATCTGCTTGATTCAGTGTTATTACTTTTACATATGAATATAATGACCTACAGGTGTATGCTATGCAGTCATGGGGCACCTCTgatcaaaatacatgtttagtcaatttaaaaacacactacagaGAACCAGCTTCTGCACATTTTAATTCATAAACACTCAGTACTTGAATGTTTTACATATTAGGACAAACACATTGTGGCATGCACAAAGATGATGGCATCATTGCTGTCACTTTGTATctaatttttaactttttgacaTAAATGTAGAAATTGGCTGTAATTTTATTGTTTCAAAGATTCCTAAAAAAT

Function

NR:

description
lysM and putative peptidoglycan-binding domain-containing protein 4-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015607162.2 True 1565 mRNA 0.47 3 20745568 20751796

Neighbor

gene id symbol gene type direction distance location
arrdc4 NA coding upstream 71341 20666244 ~ 20674227 (+)
LOC103025942 NA coding upstream 898010 19775339 ~ 19847558 (+)
mef2a mef2a,LOC107715609,LOC107690382,LOC107715212 coding upstream 973441 19666624 ~ 19772127 (+)
LOC111194775 NA coding upstream 1225015 19515607 ~ 19520553 (+)
fan1 NA coding upstream 1233343 19500023 ~ 19512225 (+)
rgma rgma,LOC107715216,LOC107690376,LOC107715612,LOC107693037 coding downstream 234828 20986624 ~ 21007290 (+)
LOC103034607 si:dkeyp-59c12.1,LOC108431221,LOC105905574,LOC107715203 coding downstream 499908 21251704 ~ 21255960 (+)
LOC103034933 LOC108431189,LOC101061116 coding downstream 603323 21355119 ~ 21371584 (+)
pex11a LOC108431222,LOC107714788,LOC107556261,LOC107690406,LOC107715221,LOC107691149 coding downstream 705560 21457356 ~ 21461379 (+)
LOC103031832 NA coding downstream 879964 21631760 ~ 21699721 (+)
G159709 NA non-coding upstream 214843 20530473 ~ 20530725 (+)
G159706 NA non-coding upstream 289404 20455811 ~ 20456164 (+)
G159705 NA non-coding upstream 296785 20448458 ~ 20448783 (+)
G159677 NA non-coding upstream 488355 20256507 ~ 20257213 (+)
G159662 NA non-coding upstream 532042 20207227 ~ 20213526 (+)
G159731 NA non-coding downstream 319 20752115 ~ 20752674 (+)
G159734 NA non-coding downstream 1004 20752800 ~ 20753254 (+)
G159739 NA non-coding downstream 98558 20850354 ~ 20850931 (+)
G159744 NA non-coding downstream 145355 20897151 ~ 20897538 (+)
G159777 NA non-coding downstream 325423 21077219 ~ 21077425 (+)
G159728 NA other upstream 8519 20736598 ~ 20737049 (+)
G159666 NA other upstream 558649 20185516 ~ 20186919 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other upstream 2169131 18525528 ~ 18576437 (+)
rapsn rapsn other upstream 2759664 17971096 ~ 17985904 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other upstream 3373362 17327100 ~ 17372206 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other downstream 257506 21009302 ~ 21011794 (+)
fam174b NA other downstream 308860 21060656 ~ 21074573 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other downstream 1396048 22147844 ~ 22152785 (+)
G160134 NA other downstream 2101616 22853412 ~ 22854081 (+)
G160306 NA other downstream 3367333 24119129 ~ 24119825 (+)

Expression


Co-expression Network