LOC107197792 (LOC107197792)


Basic Information

Item Value
gene id LOC107197792
gene name LOC107197792
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 18030488 ~ 18035696 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015607513.2
GGGGAAGGGTGTAGGGTGTAACTGTTGTATTGGGACTGACCCTGGgtagtgaagtgtgtttttgtgtccgCTTGGTCTTTTAAAACTCAGAACAAACGGGTAgcgggagagagaagagaggagaccGGGGGTCGGGAGTTTATCATGTACAGAGCAACTATGAGTTCTATCAGCGAAAAATCGACCCAGTGAGGGATTGAAACTACGTGCTTGAGTGATCTTAAACACCGCTATGATGGATGTCAACGACAACATTAACGCTTTCTCCCAACCGTCCATCCTCTTCCTGACATTCCTTCAACAAACACCTTCCCATAACCCGGAGTTTAAGCGTGAGTTACAGCTGCTGACCTGTGATATGGCTCTCCAAGCAGATCAGTGTGTTTACAGTGGTGAGATGGACTATTCAGACCACAGTATGATCGACCCGAACATTGAGTGTGATGGTGAATTGGAAGCAGATGGACATGGGCTTTCAATTCAGAGAAATCTTCTGCAGGACATTCTTCCTCAAGCCCACCTTGGATTGCCAGtgAATAACGAGGTCATTCGAGAGGTAGCAGCGGAGCTCATTACAATTGCAGATGATCTTAATAACACCATCATGTCTCGAGCTGCAGACAGTCTGACCAGTGAACTGAGAAGAACATCATCTATGCAGACGTGGCCGGCCCTCCTGAGACGAAGTGTTACTgaattaataaactgtgtgccTGGTGCCCACAACGAGCAAGTGACAATGGCTCTTACATTCTCCCTAGTGAAGGCAGTGTGTGAACGTGCCCCTCCCCTCCTGCGGGGTCTCTTTAGCGTACTGATGCAGTATATCTATCCAGCCAGGCCCCGGTGACCCACTCCACTGACACCTTCTGTTTTCAACTTGATTCTAAAAGGGagcatttttgctgttttgattttttttttttttaatttagtatgaTTCCTGGGCTTAATCAGAACACCCTGGACAAATAAAGTTGAGGATCTCTTGAGTTTAGTGGTGAGATCTGCAGCAGGGATTCAGGTTATACTCGGTGCTGTTCCACGTGACTTCCTCAGGGGAAAGAATGCTGTTTACAGACATCCCTGCCATCCCTGATTGTACAAACTTGTTCATTGATCTTTATGACTTACTACTGCTGGTGTATGAGGAAATGATTTTGTTATGTATTTATACTCATATCACTGATGCAAAGTCATAATTCTGCCTGAGAGAGTGGGGCTGCCAATTAATGATTTGTTGGACTCTTGTTCATGGTTGGCACTTGTACTGGTAGATGCACCACTGTGAATCTGTTCCgcatcattaaatgttttttttttttgttaaatttcttttttgttaaatttcttTTTCGTTTACTTGTTTACACAATGTACCATTGTGAagattttgtttaaatgtagtTGTTTATTGTTGGGGAATTAAACACAAATTGGCACAA

Function

NR:

description
uncharacterized protein LOC107197792

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015607513.2 True 1445 mRNA 0.44 4 18030488 18035696

Neighbor

gene id symbol gene type direction distance location
wee2 wee2 coding upstream 483 18023904 ~ 18030005 (+)
agk agk coding upstream 19934 18004007 ~ 18010554 (+)
LOC103029004 NA coding upstream 36118 17985993 ~ 17994370 (+)
kbtbd4 kbtbd4,LOC107708223,LOC107738697,LOC107596956,LOC107672308 coding upstream 61552 17964383 ~ 17968936 (+)
ddb2 ddb2 coding upstream 72054 17949130 ~ 17958434 (+)
cftr cftr,LOC107738689,LOC107583749,LOC107596947,LOC107708216 coding downstream 99021 18134717 ~ 18164724 (+)
LOC103028633 NA coding downstream 225469 18261165 ~ 18265803 (+)
arpin arpin coding downstream 379831 18415527 ~ 18435115 (+)
kmt5b kmt5b,LOC107738677,LOC107694947,LOC107596936,LOC107583742,LOC108264420,LOC107726382,LOC107672243 coding downstream 426402 18462098 ~ 18468279 (+)
chka chka,LOC108424340,LOC107738676,LOC107726368,LOC107694945,LOC107583738 coding downstream 437240 18472936 ~ 18491526 (+)
G159129 NA non-coding upstream 33760 17995698 ~ 17996728 (+)
G159122 NA non-coding upstream 83805 17942316 ~ 17946683 (+)
G159120 kif23,LOC107686310 non-coding upstream 92400 17926988 ~ 17938088 (+)
G159115 NA non-coding upstream 160020 17870007 ~ 17870468 (+)
G159028 NA non-coding upstream 431134 17596059 ~ 17599354 (+)
G159182 NA non-coding downstream 72467 18108163 ~ 18109539 (+)
G159184 asz1 non-coding downstream 78309 18114005 ~ 18128429 (+)
G159272 NA non-coding downstream 375616 18411312 ~ 18411936 (+)
LOC111194744 NA non-coding downstream 377665 18413361 ~ 18413950 (+)
G159274 NA non-coding downstream 392459 18428155 ~ 18428426 (+)
rapsn rapsn other upstream 44584 17971096 ~ 17985904 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other upstream 658282 17327100 ~ 17372206 (+)
zwilch zwilch other upstream 841237 17177675 ~ 17189251 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other upstream 858260 17101612 ~ 17172228 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other upstream 1232088 16779506 ~ 16798400 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other downstream 489832 18525528 ~ 18576437 (+)
G159666 NA other downstream 2149820 20185516 ~ 20186919 (+)
G159728 NA other downstream 2700902 20736598 ~ 20737049 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other downstream 2973606 21009302 ~ 21011794 (+)
fam174b NA other downstream 3024960 21060656 ~ 21074573 (+)

Expression


Co-expression Network