LOC111194719


Basic Information

Item Value
gene id LOC111194719
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 36391175 ~ 36439808 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679413.1
ATGCCTCTGGCTCCACATTATTCCTACAACCTTACAGCCATGCCAAatattgagctgACGGCTCAACCCCGCCTTACCCCCTACGACGGCAGCGCTGACTGGACAGCCTTCAAAGCTCAGCTGGAGATCGTGGCGGGCGGTGCGGGCTGGACAGATGCCGAGACGGCAGCCAACCTCTGCCTGGCGCTTCGGGGCGACGCGCTGAGGGTACTGATCGAACTCCCCGCCGAGTGCCGCTGCGAGCTGCCTGAACTGACGCGGGCGCTGAGAACACGTTTCAGCCGCCAACCGTCGGAGGCGGCCGCCAAAATGCTTGTGGCGGACAGACGCCGACAGCAGGGAGAGACACTGGGCGTGCTGGCATCGGAGATGGCCCTGCTAACCCGCCAAGCTTACCCAACGTTTCCGCGATCGGCCCAGAGGAGGCTCGCTTTGGATCACTTTCTGCGCGCCCTCGAGCCGAGCGAGCTGCGCAAACACGTGAGGCTGGCCGACCCGCAGACCCTGGAGTCCgcggtggaggtggtggagctgTCTGAACTCATCCTCTCAAGCCATCCTTTACCGTGGGGGCCGTCGCCGGTTGCCCGTGATTCGCAGAGGTGGGGTCGGAGCCGGTCTGATGCCCAACTGGAGTGCTGGCGCTGCggggggcgtggccacaagCGAGCGCACTGCAGAAGGCCGGAAAACGGAGCCAGGACCACCCACGGCTATTTCCTGAAATGCACATTGAATGGAGTGacggtgaacgcgctggtggacACGGGCTCGTCAGTCTCACTGATACGGCCCGAGCTAGCGACGGAGGTAGCGGCCGAGTTTGTGACTGACAACAGCCAGCGCATCGCTCTCTCTTCAGTCACCGGGGATCCTATAGGTCTCCTAGGATTAATGGAGTTGACGATTGATGTCGGCAAGGGGCCCTTTCAACAACAGTTCTGGGTAGGACGCATCAACGacccgtgcattctgggcaaggacCTAGCCGTCGGAGCTATCATTGACTGTGCACGGGGCTCGGTGCTGGTGACTGGACTCCCCGTAGAGATACGCGACGAATCCGATAGAGGAGATGCTGGAGCGCAGTTGTGTGGGTTTATCTGGTCCCCAACAACAAAACTTCGTTTGCGCGAACTGATCGGCCGTTTTCGCACAAGTTTCGCTGTGTCTGAGCGCGAGTGTACTAAAACTAGCCTTGCGGTTCATTCGATAAACACGGGTGACGCCCAGCCCATCAGGCTGTGGCCGCACCGTCTGGCGTTAGCAAAGCGCGTAGCGGCGGAGCAGTTATTCCGCAAGATGGCGAGTACGGGCATTATTGAGCCTTCGAGCAGCCCGTGGTCAGCCCCGGTGGTCCTTGCAAAAAAGAAGGATGGAAATTGGCACTTTTGCATGGATTATCGGCGACTTAACGCTGTCACGAAGCTTGACTCCTACCCGCTCCCCAGGATCGACGATATGCTGGACCAGCTGTCTGGctcagcctggttcagctcgTTAGACCTGAGGAGCAGATATTGGCAGGTGCCCCTCGCGGCGGGGGATAGGGAGAAAAACGCTTTCTCGCTCGGCTCAGCCCTATGGCATTTCACGGTGCTTCCGTTCGGATTGTGTAACTCGCCGGCTACTTTTGAGCGTCTTATGGAGCGTGTTTTATGCGGGGTTCCGCGGTCGTGCTGCCtcgtttatttggatgatgtcTTGGCGCACGGAACCGACTTCGACTCCGCACTCTCTCACCTTGAAATGGTGCTCGGCGCGATTCAGGCGGCTAACCTGAAGCTCAATCCGGCAAAGTGTAATCTGCTAAGGCAGCGCGTGAGCTTCCTGGGCCACGTAGTGAGCGGTGCTGGAGTGGAAACCGATCCCAAAAAGACGGAGGCGGTCCGTGACTGGCCCACACCGCGAGACGCAAAAATGGTTCGCAGCTTCGTGGGGCTCGCCTCGTATTACAGGCGGTTTATTAGGGGGTTCGCGGACGTGGCAGCGCCGCTTCATGCTCTGACTAAGCCTAGTGTGAAATTCCGCTGGTCTGACGAGGCGGAGCGGGCATTCGAGGAGTTAAAAGCCGCCTGTGCCAAAGCTCCGATTCTAGCGTATCCGAAGGTGTCTGAgagtttcattgtggatacCGATGCGAGCGACCACGGCCTCGGAGCAGTCCTGTCGCAGGTTCAGGACGGCTCCGAGCGCGTAGTAGCGTACTATAGCCGCTGCCTGGACAAGGCGGAGCGCAACTATTGCGTAACGCGCCGGGAACTACTCGCGGTGGTCGAAAGCCTTAAACATTTCCAAGCGTATGTGTATGGGGTGCCCTTTCTGCTGCGCACTGACCACGCCTCGCTACAGTGGCTCATGCGTTTCCGCGAGCCCGAGGGCCAACTCGCGCGCTGGTTatctagactccaggagtttcATTTTGAGGTTGTGCACCGCCCGGGCCGTGGCCACAGTAACGCTGATGCTTTGTCGCGCCGGCCGTGTGTGGCCGCCGACTGCAAACATTGTGCTcgtgctgaggagaaatctgctgAGACCGCACGCTGCGCTGCAATCTCCAGGGATGTTACTGGCGCTGTCGGGGTGACTCAGGTGTCCGTAGAGCAGCTTCGCGATGCGCAACGGGCGTATCGCGAATTATCGTGGGCAGTACACGAGCTCAGTGCGAACGTCACACCGTCGTGGGGGGAGGTGGTGCCACTGGGCCcgattgctaaggcgttgcgctccaactgggctagttttagtttgtccGATGGCGTGCTGTGCCATACCTGGGAGGATCCGGCGAACGGGCGGCGCGTTTTTCAGGTGGTGGTACCGCGGGCGCTTAGGGGATCGGTCCTACGGGGAGTTCATGGGTCACCTGGGGCTGGGCACTTTGGTGTCACCAAGACTCTGAAGCGCCTGAGCCAACGCTTCTATTGGCCTGGGTGTAGAACCGACGTGGAACTCttcgtgcactgctgtgacgtgTGCGCTGCCAAGAAGGGCCCCTCGAGGGCGCCCCGCGCCCCACTTCACCCTTACCAGTGCGGCAGCCCGATGGAGCGGGTGGCCGTGGACGTGCTGGGCCCCTTTCCGGTGACAGACTCTGGAAATCGCTTTGTTCTGGTGGCGATGGACTATTTCACGAAGTGGCCAGAGGCCTACACGGTGCCGGACCAAGGGGCGGTCACTACTGCGGATGTCCTGGTGCGGGAGTTCTTTTGCAGATTCGGGGTTCTGGAAGAACTGCACAGTGACCAGGGGAGAAATTTCGAGTcggaggtcatggcggaggtctgccgcaTCCTGGGAATCCATAAGACCAGGACGACGCCCCTTCATCCACAGAGTGACAGACTGGTGGAACGTTTTAACCGCACGCTGGTGgcgcagttggccatggtgtcggacaagaaccagcgtgactgggacaggCACCTGCCGGTAGTGCTGCTGGCTTGTTGCTCCGCTGTGCAGGAGACGACGGGATTCACGCCGGCTCTGCTTATGTTCGGGCGCGAACTGAGGACACCAGTCTCCCTGGCTTTTGGGGCGCCTCCTGACAGGGGCGGGTACGCTTCGGACATGCCCACTTTTGTCTCGGACCTTATGTCTTCGCTGGAATTAGCACACCATCTAGCGCGCTCCAACCAGTCTGCTGCCGGACAGAAGCAGAAGCGTGCGTACGACACACGCTGCTTTGGGGACCCGTTGGCGGTGGGGGCGAGGGTTTGGCTATATGACCCTCAGCGGAAGAAGGGACTGTGCCCGAAGCTCCAGTCGGCCTGGGTGGGTCCgtgcttggtgctgtccaggctgGGGGAGGTGGTGTATAAGATCCGGTGGGGCAGACGCACTATGATTGTGCACCGTGATAGGCTGGCCCCCTATAGGCCGAGACTGTCGGACACTGTGGACGGTGGTGCCCTCcagCTGCAGACCTGCCAAAGCCTGTCCATCGACCCGCCCGTGCTGCCATCGCCGTCACGACGGGCCTCCTGTCGCCACGGCGACGGACAGACGACCCCGCCCTGCCCCTTGCCATCTCTCTGGTTACAGCAACCCCACGCCTGCCACGGGATCAAAAGGTCATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679413.1 True 4086 mRNA 0.60 7 36391175 36439808

Neighbor

gene id symbol gene type direction distance location
rab27a rab27a,LOC107735066,LOC107600376,LOC107659079 coding upstream 168140 36188768 ~ 36223035 (+)
LOC103046170 NA coding upstream 243073 36142088 ~ 36148102 (+)
dnaaf4 NA coding upstream 254435 36127139 ~ 36136740 (+)
prtg prtg coding upstream 280768 36073806 ~ 36110407 (+)
nedd4 nedd4,LOC107735005,LOC106562216 coding upstream 326753 35995972 ~ 36064422 (+)
LOC103026877 unc13c,LOC108411445 coding downstream 530902 36970710 ~ 37261985 (+)
LOC103045417 NA coding downstream 947686 37387494 ~ 37399839 (+)
LOC103045107 dhdh,LOC108431994,LOC107665090,LOC106587215 coding downstream 961720 37401528 ~ 37407914 (+)
parp6 parp6 coding downstream 1015927 37455735 ~ 37507197 (+)
LOC111194820 celf6 coding downstream 1150177 37589985 ~ 37835900 (+)
G162904 NA non-coding upstream 2783 36388021 ~ 36388392 (+)
G162893 NA non-coding upstream 117813 36273124 ~ 36273362 (+)
G162883 NA non-coding upstream 157087 36233752 ~ 36234088 (+)
G162870 NA non-coding upstream 161320 36228725 ~ 36229855 (+)
LOC103046468 NA non-coding upstream 205516 36183719 ~ 36185659 (+)
G162917 NA non-coding downstream 47960 36487768 ~ 36487983 (+)
G162927 NA non-coding downstream 104662 36544470 ~ 36544753 (+)
G162930 NA non-coding downstream 122781 36562589 ~ 36562903 (+)
G162941 NA non-coding downstream 230179 36669987 ~ 36671428 (+)
G162942 NA non-coding downstream 230565 36670373 ~ 36671942 (+)
ccpg1 ccpg1 other upstream 221430 36132415 ~ 36169745 (+)
pygo1 pygo1 other upstream 270773 36112042 ~ 36120402 (+)
ss18l2 ss18l2,kiaa0355 other upstream 576382 35807865 ~ 35814793 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other upstream 3671900 32714183 ~ 32719275 (+)
G162032 NA other upstream 4096146 32236316 ~ 32295029 (+)
G162964 LOC108431875,LOC108413582 other downstream 314377 36754185 ~ 36754687 (+)
LOC103046025 hcn4,LOC108263998 other downstream 847359 37287167 ~ 37352779 (+)
G163105 kpyk,LOC103044212,LOC108432067,LOC108264538,LOC106587214 other downstream 970184 37409992 ~ 37411969 (+)
reln reln other downstream 3135281 39575089 ~ 39788454 (+)

Expression


Co-expression Network