LOC111194723 (LOC107704663)


Basic Information

Item Value
gene id LOC111194723
gene name LOC107704663
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 38944402 ~ 38945904 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679415.1
ATAAGGTGAAGGCGTTTTTCGTTTAATCCCGTTCCCATGTATGGGGCACTAACTAATTCTTACTTCATTAAAATAACCTAATGGTTTAAAACGCGATAGTAAAAGTTCTCCATATATAATCCagcagttattttttatttggtgttTTTAATTGGGTATAGTTCCTTTCTCGCGCAGTCGTCTTTTCTTAACGAGTGATACGGATTTGCGGACTAATCGTCATGTGTTTCCCGCTAGACCAATCAGGCGGCTGCTTTTAGGAGCCGGAATCCAAAATGTCTGCGCCCGTGTTGTCAACAACGAGTAGTGAAGACGAAGACTGTCCGACAATAATACCTGCAAACgtgcataaaaaatgtttaaaacaatgttaTATGCATCTTACGTCCTTAAAGAAAGAAGAGGCAGAGGATTTTACACGCACGCGGTGGGATACTTTCAGAAACAGCGTTAAACGATGGCTTGGCTTGAAGGGGGAGAGCCAGAGGATTGCAGAAACATATAAACATTGTATTGAAATTGAGTTTGAGAATATTCCTAAAGATGCTGGGTTTCACCCCACTTGCTACCGGCGTTTTATAGACAAAAAACGTTTAAATGCGGCAGAGAAACAAGTCACACAGTGTCCTGAAGCTCAGGATACGGACGGAGGCGAGTCATCCTCTGTTGCTTCATCATGTTATACCCCAACAAAGAAACTGAGGTCCAGGACGGGTTTGCCAGTCCCTTGTACTGGTCCCGTGCTTCCTGCGTtatgcataatatgcaaaaaaagGGACAAGTATCTAACTGTTGGAGGCAAACGCCAGAAGGACCATCTGTCACAGGCAGAAACGTTTTCAGCAGgcCAGTTGCTAAAAGCTGCCAGGATGAAGGAAGACACTAGCATTCTTGTACATATTCAAGATAAAGACTGTGTGTCCCTGGAGGTGCGATACCACAAGTCCTGCTACAGACAGTACACCAGATTCTTGTCAAAGACCACCCCTACAATTACTGGTGCACCAGAAGAACGGTAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107704663

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679415.1 True 1019 mRNA 0.43 2 38944402 38945904

Neighbor

gene id symbol gene type direction distance location
LOC103021700 LOC103021700,LOC102310173,LOC102785042,LOC102211940,LOC101470544 coding upstream 998153 37944201 ~ 37946249 (+)
LOC111194820 celf6 coding upstream 1108502 37589985 ~ 37835900 (+)
parp6 parp6 coding upstream 1437205 37455735 ~ 37507197 (+)
LOC103045107 dhdh,LOC108431994,LOC107665090,LOC106587215 coding upstream 1536488 37401528 ~ 37407914 (+)
LOC103045417 NA coding upstream 1544563 37387494 ~ 37399839 (+)
LOC111194822 LOC107569781 coding downstream 272 38946176 ~ 38951124 (+)
LOC111194738 LOC104947953,LOC106536897 coding downstream 146575 39092479 ~ 39094807 (+)
LOC103046335 ch25hl1.2,LOC108435345,LOC107691130,LOC107725743,LOC107567893,LOC102790067 coding downstream 227420 39173324 ~ 39175138 (+)
tspan3 tspan3,tspan3a,LOC107690355 coding downstream 239318 39185222 ~ 39191405 (+)
pik3c2a pik3c2a coding downstream 326032 39271936 ~ 39337878 (+)
G163386 NA non-coding upstream 24714 38917939 ~ 38919688 (+)
G163382 NA non-coding upstream 63474 38880389 ~ 38880928 (+)
G163379 NA non-coding upstream 70547 38873408 ~ 38873855 (+)
G163349 NA non-coding upstream 141214 38802968 ~ 38803188 (+)
G163297 NA non-coding upstream 199466 38742795 ~ 38744936 (+)
G163420 NA non-coding downstream 90966 39036870 ~ 39042425 (+)
G163421 NA non-coding downstream 107490 39053394 ~ 39091133 (+)
G163443 NA non-coding downstream 159901 39105805 ~ 39106049 (+)
G163444 NA non-coding downstream 161883 39107787 ~ 39129586 (+)
G163465 NA non-coding downstream 230296 39176200 ~ 39178877 (+)
G163105 kpyk,LOC103044212,LOC108432067,LOC108264538,LOC106587214 other upstream 1532433 37409992 ~ 37411969 (+)
LOC103046025 hcn4,LOC108263998 other upstream 1591623 37287167 ~ 37352779 (+)
G162964 LOC108431875,LOC108413582 other upstream 2189715 36754185 ~ 36754687 (+)
ccpg1 ccpg1 other upstream 2774657 36132415 ~ 36169745 (+)
pygo1 pygo1 other upstream 2824000 36112042 ~ 36120402 (+)
reln reln other downstream 629185 39575089 ~ 39788454 (+)

Expression


Co-expression Network