LOC111194726 (sstr5,sstr2,LOC106601899,LOC101075299,LOC106606408)


Basic Information

Item Value
gene id LOC111194726
gene name sstr5,sstr2,LOC106601899,LOC101075299,LOC106606408
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 40907141 ~ 40910721 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679420.1
ATGTACTCAGACACGACCCTGGTCATCACCTTCATCTACTTCGTGGTTTGAGCCGTAGGGCTCAGCGGAAATGCCCTGGTTATCTACGCCATCCTGCGCTACGCCAAGATGAAGATGGTCACCAACATCTACATTCTCAACCTGGCTGTGGCCGATGTGCTCTTCATGTTGAGTCTGCCGTTCATCGCCATCCAGCTGGCTCTGGTGCACTGGCCTTTCGGTTTGGCGCTGTGCCGCGTGGTCATGACCGTTGACTCTTTGAATCAGTTCACCAGCATCTTCTGCCTGATGGTGATGAGCATTGATCGATACCTGGCCGTGGTGCACCCCATCAAATCCACCAAGTGGAGAAAGCCCCGGGTGCCCAGGACCATCAACCTGGCGGTGTGGGTGGTGTCTCTACTCGTCAACATGCCCATCGTCATCTACAGTGGCTTGATCACCAAGACAGGAGGCTGTTTCTGCACTAGTTTGGCCATCAAGGTGAAGTCCTCCGGGATACGGGTGGGCTCGTCCAAGCGTAAGCGCTCCAAGCGGAAGGTGACGCGAATGGTCTCCATCGTGGTGGCCGTCTTCATCTTCTGTTGGCTGCCTTTCTACGTCTTCAACGTGACGTCGGTGACGGGCTCCATCAGCACCACGCCCATCCTGAGGAGCACCTTCGCCTTCGTGGTGGTGCTGGGATACGCCAACAGTTGTGCCAACCCTATTCTGTACGCCTTCTTGACTGAGAGGTTCCGCAGGTCATTTGTTCCTGCTGGAATTAGACTACTTAACACCTGATGTGTGTACTTAATAAGCAccatttagcactttttttttgtacctgggTGTGGACTCTGTcgtgtatgttttttgtgtgtttttgttttttgttgt

Function

symbol description
sstr5 Predicted to enable neuropeptide binding activity and somatostatin receptor activity. Predicted to be involved in cellular response to glucocorticoid stimulus; neuropeptide signaling pathway; and regulation of insulin secretion. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in bipolar disorder. Orthologous to human SSTR5 (somatostatin receptor 5).
sstr2 Enables PDZ domain binding activity. Predicted to be involved in cellular response to estradiol stimulus; cellular response to glucocorticoid stimulus; and neuropeptide signaling pathway. Predicted to act upstream of or within adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway. Located in cytosol.

NR:

description
PREDICTED: somatostatin receptor type 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679420.1 True 879 mRNA 0.53 3 40907141 40910721

Neighbor

gene id symbol gene type direction distance location
LOC103036843 sstr5,LOC108241368,LOC103468864,LOC107083133,LOC106942343,LOC103140984,LOC102219310,LOC106518680 coding upstream 141593 40759275 ~ 40765548 (+)
LOC103039568 sox9 coding upstream 636755 40264663 ~ 40270386 (+)
LOC103034226 NA coding upstream 979223 39838037 ~ 39927918 (+)
LOC111194742 NA coding upstream 1086517 39814996 ~ 39820624 (+)
LOC103038446 LOC108443054,LOC108263931,LOC108265089 coding upstream 1415065 39487766 ~ 39492076 (+)
rab26 rab26,LOC102798624,LOC100707100,LOC101484267 coding downstream 237623 41148344 ~ 41319019 (+)
G163886 NA non-coding upstream 131477 40775083 ~ 40775664 (+)
G163885 NA non-coding upstream 132829 40773088 ~ 40774312 (+)
G163884 NA non-coding upstream 134320 40772523 ~ 40772821 (+)
G163874 NA non-coding upstream 137566 40767245 ~ 40769575 (+)
G163877 NA non-coding upstream 187168 40719727 ~ 40719973 (+)
G163944 NA non-coding downstream 14244 40924965 ~ 40925289 (+)
G163956 NA non-coding downstream 119736 41030457 ~ 41030753 (+)
G163957 NA non-coding downstream 123265 41033986 ~ 41034244 (+)
G163961 NA non-coding downstream 170539 41081260 ~ 41081698 (+)
G163981 NA non-coding downstream 263397 41174118 ~ 41175016 (+)
reln reln other upstream 1118687 39575089 ~ 39788454 (+)
G163105 kpyk,LOC103044212,LOC108432067,LOC108264538,LOC106587214 other upstream 3495172 37409992 ~ 37411969 (+)
LOC103046025 hcn4,LOC108263998 other upstream 3554362 37287167 ~ 37352779 (+)
G162964 LOC108431875,LOC108413582 other upstream 4152454 36754185 ~ 36754687 (+)
ccpg1 ccpg1 other upstream 4737396 36132415 ~ 36169745 (+)

Expression


Co-expression Network