LOC111194727


Basic Information

Item Value
gene id LOC111194727
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15333873 ~ 15335002 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679422.1
AACTCATCACTACCAGACTACCATGGCATCTTATTCACAGGAATCTCTCCAAAGCAATTTTTCATGGGCCTTACGGAACGGGTCCTCTTTAGCCTCGGTTATAGCCGAGTGTAACAAGAACGGAACTCCTCCGGCTCGGATACCCATCCAGATCACTGTCCTAGTCATCGCCCTTCCTGCGAATGCGCTCCTGGTCTGGTTGCTACTGAGAAACAAGAAGCCTCTGTCACCCTCTGAGGTTTTAGGCCTCAACCTCGCTGTGCTCAGTATCATATATTGCCTCAGTCTGCCTTTAGACATCTATATTTCAACACGTCTGCGCTCCGGACTGCTCCTCCGTATCTGTCACACCTTCTCCATCCTCAGTTACTTCGGCTGCCCCCTCCTGCTCTCCAGTATGTGTACGGAACGCTTTGTGGCCGCATCCTTCCCTGTGCTCTTCATGAGACTCGGGAAGTTGGAGTACCGCGCTGCATACTCTGCCTTCCTCTGGCTGCTCACCATAACCATGGCAGCTGCCACCTACATCTACAGCCTCCCTGTTGTAGCTGTGGCCCTCTCCTTCATCATCAACATCCTCTTCTTCTTCATGCTGATCGCCCTGCTGGGCATCGTGTGGGTGCTGTGCAAAAAGGGTCCAGGTGACGCCACAAACGGGGAACAACGGGATTCGTCCATAAAGAAGAGAGCTCTGAAGAACATCCTAGCTGTAATAGTGCCCTCCACTATAATCTATCTGCCAGTAGTGGCCCTGGGCCCTTACCTCCTGCTGCTCGAGGCAATCGGGGATGATGGTATGAATGCGTTTCTGTGCAATGGTCTGCAGTTGTTTAGTGTTCTCCCCAATTTCGGAGTCTGTATTGGGCCTTCCTTCTACTTGACTCGGGCAAGGCAAGTGCTCTGCTACAAAAGTAATGAAACCTGAGATACTAACTAAAAATAGTCTGTTTTGTCGGTGTTATAAAAATGCGATAAAAAAGGGTAGCATAATAAAATTTTGGATTTCTAAGCCTTTAGAGAAGTCCTTCAGAATTCTTGGAATTATGGGTCTATCATTTAAGTTGCTTATTTACTATTaaatacacatagaaaatatgtaaaaatgttttttttttattgaaaatggACAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679422.1 True 1130 mRNA 0.47 1 15333873 15335002

Neighbor

gene id symbol gene type direction distance location
LOC103021723 LOC108426425 coding upstream 2543 15321270 ~ 15331330 (+)
nrip3 nrip3 coding upstream 29862 15298945 ~ 15304011 (+)
rnf141 rnf141,LOC107672299,LOC107740332 coding upstream 178264 15150051 ~ 15155609 (+)
LOC103024643 NA coding upstream 185238 15144072 ~ 15148635 (+)
LOC103031502 eif4g2b,LOC108431851,LOC107730533,LOC107569652,LOC103379577 coding upstream 213568 15107363 ~ 15120305 (+)
LOC103046975 NA coding downstream 7492 15342494 ~ 15347109 (+)
chtf8 chtf8,LOC107583916,LOC107569647 coding downstream 38347 15373349 ~ 15376164 (+)
LOC103031192 LOC108423591,LOC105018602,LOC103466747,LOC108229128 coding downstream 147442 15482444 ~ 15501213 (+)
LOC103043506 LOC108423614 coding downstream 343721 15678723 ~ 15688714 (+)
kiaa0513 kiaa0513,LOC107740318,LOC107583795 coding downstream 356501 15691503 ~ 15717211 (+)
G158477 NA non-coding upstream 14188 15315957 ~ 15319685 (+)
G158475 NA non-coding upstream 28410 15304809 ~ 15305463 (+)
G158461 znf143,znf143b non-coding upstream 38481 15291441 ~ 15295392 (+)
G158472 znf143,znf143b,LOC107672322,LOC107583804 non-coding upstream 43146 15284904 ~ 15290727 (+)
G158467 wee1,LOC108264466,LOC107686254,LOC107580369,LOC107758614,LOC107740329,LOC107583885 non-coding upstream 53852 15277623 ~ 15280021 (+)
G158486 tbc1d15,LOC107686258,LOC107672302,LOC107749074,LOC107579928 non-coding downstream 28755 15363757 ~ 15367122 (+)
G158555 NA non-coding downstream 56657 15391659 ~ 15393165 (+)
G158565 zc3h18,LOC107672267 non-coding downstream 117214 15452216 ~ 15461006 (+)
G158576 NA non-coding downstream 168524 15503526 ~ 15504044 (+)
G158580 NA non-coding downstream 236532 15571534 ~ 15572338 (+)
c18h11orf16 NA other upstream 18321 15306212 ~ 15315552 (+)
LOC111194769 NA other upstream 196603 15128368 ~ 15137270 (+)
G158369 NA other upstream 283155 15050222 ~ 15050718 (+)
LOC103042073 LOC103042073,LOC108418727 other upstream 1353848 13973821 ~ 13980025 (+)
LOC107197649 LOC108416831 other upstream 1591373 13733945 ~ 13742500 (+)
LOC103041858 NA other downstream 433053 15768055 ~ 15768661 (+)
LOC107197617 NA other downstream 436293 15771295 ~ 15771945 (+)
LOC103041352 NA other downstream 440422 15775424 ~ 15776166 (+)
G158779 NA other downstream 1044257 16379259 ~ 16379823 (+)
siah1 siah1,LOC107549647,LOC107742888,LOC106573709 other downstream 1207876 16542878 ~ 16571458 (+)

Expression


Co-expression Network