CI01000012_12505469_12509093 (ERLIN1, ERLIN2)


Basic Information

Item Value
gene id CI01000012_12505469_12509093
gene name ERLIN1, ERLIN2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12505469 ~ 12509316 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_12505469_12509093.mRNA
ATGGCCGGTGTGATGGCCATTCTGCTTCATTCTTCCATACACAAGATTGAGGAAGGACATTTAGCTGTGTATTACAGAGGAGGAGCTTTGTTGACAACTCCTAATGGCCCGGGTTATCATATAATGCTGCCTTTCATCACTTCATACAGATCAGTGCAGACGACTTTGCAAACTGATGAAATAAAAAACGTGCCTTGCGGAACCAGTGGGGGTGTCATGATCTATTTTGACAGAATTGAAGTGGTCAACATGCTGGTTCCATCAGCAGTGGTTGACATAGTGAAGAACTACACTGCAGACTATGACAAGACGCTAATCTTCAACAAAATTCACCATGAGTTAAACCAGTTCTGCAGTGTGCACACACTACAGGAAGTCTACATAGAGCTGTTCGACATAATTGATGAGAACTTAAAGACTGCGCTGCAGAAGGACTTGAATGCTATGGCTCCTGGTCTCACTATTCAGGCTGTGCGAGTCACCAAACCTAAAATTCCTGAGGCAATCAGAAGAAACTATGAGCTAATGGAAGCAGAGAAGACAAGGCTGCTTATCACCGCTCAGACGCAGAAAGTTGTGGAGAAAGAGGCTGAAACTGAGAGAAAGAAAGCTATCATAGAGGCTCAGAAAATGGCTCAAGTGGCAGAGATTCACTTCCAACAAAAAGTGATGGAGAAGGAAACAGAGAAAAAGATTTCAGAAATTGAAGATTCTGCTTTCCTGGCAAGAGAGAAGGCAAGAGCAGATGCAGAATATTATACTGCTGCAAAATTTGCTGAAGCCAACAGGCTGAAGCTTACACCAGAGTACCTGGAACTGATGAAATATCAGGCCATAGCTGCAAACAGCAAGATCTACTTCGGTCAGGAAATCCCAAACATGTTTGTAGACAACAGTGCCTCCCGTCCAGCCGCGGGCCAGGGTGCGGCAGATTTGGCGGAGCAGCTGGAGTCCTTGACTTTGAAAGAGAGTCTTAAGAAAGCGTCCAAGCCCAAAGCCACAGAAGGCCACTGAGGGGCCTGAGAGCTGTCCACCCCCTCTTCCTCAGCTGTTTCTCTTTTTCTCTCTCTCTCTCTCTCTTTGTGGGGCATGGGTGCTTGTGAGGCATGCTGACATGGATGCTTTTCACTCTTCTACTGCAGTGGGGTTGGGTGCTTGGCTAGCTGTGCTGTGAGTCAGTTAGCTGAAGAGACTGACACACAGAGCCTGTGGTTTTCCAGCAGTCACTTGTGGACTA

Function

symbol description
erlin1 Predicted to enable cholesterol binding activity. Predicted to be involved in SREBP signaling pathway. Predicted to act upstream of or within cholesterol metabolic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in liver. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 62. Orthologous to human ERLIN1 (ER lipid raft associated 1).
erlin2 Predicted to enable cholesterol binding activity. Predicted to be involved in SREBP signaling pathway. Predicted to act upstream of or within steroid metabolic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 18. Orthologous to human ERLIN2 (ER lipid raft associated 2).

GO:      GO:0043234, GO:0006629, GO:0031625, GO:0032933, GO:0005783, GO:0015485, GO:0016021, GO:0016020, GO:0008289, GO:0005789, GO:0045717, GO:0005515, GO:0030433, GO:0045541, GO:0008202, GO:0008203

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_12505469_12509093.mRNA True 1237 mRNA 0.47 11 12505469 12509316

Neighbor

gene id symbol gene type direction distance location
CI01000012_12489485_12490402 NA coding upstream 15038 12489287 ~ 12490431 (+)
CI01000012_12440074_12465741 SLKA, SLKB, SLK coding upstream 39437 12440074 ~ 12466032 (+)
CI01000012_12381049_12417489 KAT6B coding upstream 86772 12380192 ~ 12418697 (+)
CI01000012_12378120_12378419 NA coding upstream 126807 12378120 ~ 12378662 (+)
CI01000012_12292583_12371612 ADK, ADKA coding upstream 133857 12292583 ~ 12371612 (+)
CI01000012_12536242_12538668 NA coding downstream 26760 12536076 ~ 12538728 (+)
CI01000012_12585843_12587149 NA coding downstream 76527 12585843 ~ 12587209 (+)
CI01000012_12621489_12646263 NA coding downstream 112022 12621338 ~ 12646399 (+)
CI01000012_12653960_12664480 SLC1A4 coding downstream 144515 12653831 ~ 12665121 (+)
CI01000012_12667656_12672197 NA coding downstream 158340 12667656 ~ 12672247 (+)
G76341 NA non-coding upstream 1939 12503212 ~ 12503530 (+)
G76340 NA non-coding upstream 4139 12501120 ~ 12501330 (+)
G76335 NA non-coding upstream 5812 12496835 ~ 12499657 (+)
G76332 NA non-coding upstream 12620 12492649 ~ 12492849 (+)
G76232 NA non-coding upstream 19221 12479640 ~ 12486248 (+)
G76239 NA non-coding downstream 7750 12517066 ~ 12523981 (+)
G76201 NA non-coding downstream 16172 12525488 ~ 12534730 (+)
G76235 NA non-coding downstream 30327 12539643 ~ 12541080 (+)
G76234 NA non-coding downstream 32273 12541589 ~ 12542061 (+)
G76249 NA non-coding downstream 81391 12590707 ~ 12591506 (+)
G75533 NA other upstream 1359730 11144817 ~ 11145739 (+)
CI01000012_10223957_10235955 NA other upstream 2281182 10223697 ~ 10236276 (+)
G73578 NA other upstream 4137842 8366806 ~ 8367627 (+)
CI01000012_07806089_07811902 BEND3 other upstream 4697614 7805248 ~ 7811902 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 6581164 5922385 ~ 5929186 (+)
G76385 NA other downstream 121439 12630755 ~ 12675666 (+)
G76374 NA other downstream 236215 12745531 ~ 12749169 (+)
CI01000012_13029637_13033226 RGS17 other downstream 506190 13029435 ~ 13038899 (+)
G76645 NA other downstream 1142543 13651859 ~ 13652234 (+)
G76656 NA other downstream 1194171 13703487 ~ 13739731 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00003009 LOC108263345,LOC107725471,LOC107666491,LOC107601865,LOC108426813 coding CM030139.1 CM030139.1 9579599 ~ 9583885 (+)