LOC111194742


Basic Information

Item Value
gene id LOC111194742
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 39814996 ~ 39820624 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679430.1
ATGTATGATGTGGGCAGTCTGCGCTCGGAGAGGAAGAAGTGGTTCAGCTATTTTGATGATGCCCGGGCGGTGCTATTTGTGGTGGCACTTAATGGGTATGATCTAACTCTTCCGGAGCGCCCCTGTTTGAACCGTCTGCAGGAAAGTCTGGAGCTCTTTACCACGGTGTGCAGCAACACACATTTCAGGAAAGCTTCACTGATTTTGTACATGAATAAAACTGACCTGTTTTGTGAGAAGATCGTTAATTCTGAGAGACATCTGAGACTCTATTGTCCTGACTTTAGAGGTCCCGACTGCGACGTGACTGCAGCCGCCCGCCACGTCACCGCCATGTTCATCACGAGGTGCACTGCATCCGGCAGGCTCGCGTTTCCTCACTACACCAACGCCACGGACACGCCCGCTGTGGGTGACGTCTTCTCCGCTGTCATCAACAGCATCACACAGCAGAACCTCCAGGCTGTTCCCCCTGCTCTGATCAGGGAGTTAACTTTTAGCTGTTTGTTATTTATAATgctttttaaaggagaactccggtgtgaaattgactttgggtgtagtaaaacatga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679430.1 True 573 mRNA 0.50 4 39814996 39820624

Neighbor

gene id symbol gene type direction distance location
LOC103038446 LOC108443054,LOC108263931,LOC108265089 coding upstream 322920 39487766 ~ 39492076 (+)
pik3c2a pik3c2a coding upstream 477118 39271936 ~ 39337878 (+)
tspan3 tspan3,tspan3a,LOC107690355 coding upstream 623591 39185222 ~ 39191405 (+)
LOC103046335 ch25hl1.2,LOC108435345,LOC107691130,LOC107725743,LOC107567893,LOC102790067 coding upstream 639858 39173324 ~ 39175138 (+)
LOC111194738 LOC104947953,LOC106536897 coding upstream 720189 39092479 ~ 39094807 (+)
LOC103034226 NA coding downstream 17413 39838037 ~ 39927918 (+)
LOC103039568 sox9 coding downstream 444039 40264663 ~ 40270386 (+)
LOC103036843 sstr5,LOC108241368,LOC103468864,LOC107083133,LOC106942343,LOC103140984,LOC102219310,LOC106518680 coding downstream 938651 40759275 ~ 40765548 (+)
LOC111194726 sstr5,sstr2,LOC106601899,LOC101075299,LOC106606408 coding downstream 1086517 40907141 ~ 40910721 (+)
rab26 rab26,LOC102798624,LOC100707100,LOC101484267 coding downstream 1327720 41148344 ~ 41319019 (+)
LOC111194824 NA non-coding upstream 12804 39799040 ~ 39802192 (+)
G163693 NA non-coding upstream 20977 39793612 ~ 39794019 (+)
G163691 NA non-coding upstream 24209 39790365 ~ 39790787 (+)
G163689 NA non-coding upstream 24939 39789834 ~ 39790057 (+)
G163604 NA non-coding upstream 204964 39609482 ~ 39610032 (+)
G163713 NA non-coding downstream 32755 39853379 ~ 39928814 (+)
G163721 NA non-coding downstream 159768 39980392 ~ 40013363 (+)
G163722 NA non-coding downstream 160765 39981389 ~ 40002482 (+)
G163769 NA non-coding downstream 237718 40058342 ~ 40058608 (+)
G163772 NA non-coding downstream 288774 40109398 ~ 40114303 (+)
reln reln other upstream 26542 39575089 ~ 39788454 (+)
G163105 kpyk,LOC103044212,LOC108432067,LOC108264538,LOC106587214 other upstream 2403027 37409992 ~ 37411969 (+)
LOC103046025 hcn4,LOC108263998 other upstream 2462217 37287167 ~ 37352779 (+)
G162964 LOC108431875,LOC108413582 other upstream 3060309 36754185 ~ 36754687 (+)
ccpg1 ccpg1 other upstream 3645251 36132415 ~ 36169745 (+)

Expression


Co-expression Network