daw1 (daw1,LOC107717604,LOC107727686,LOC107576612)


Basic Information

Item Value
gene id daw1
gene name daw1,LOC107717604,LOC107727686,LOC107576612
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 927719 ~ 952480 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679465.1
GCCGCTGGCTTGTCGCTGTGGTGACAGTGTTTAGGTTGAAGCGGCTGAGGGGAAAATGAGACTCAAACAGCTCCATATCCGATATTATCCTCCAGGAATAATCCTGGACTTTGAAAAAGGAGGGCAGCTGAGGACTAAATCCATTGACCTGCTGGACTTGACCCCAGAGTGTGATGCGAATGAGGTGCTGCTGGAGATCAGGAGACTTGAGCCATTGATCACTGTGTCTCGAGAAGAGCAGGTGAAGTTTCTGATCAAAAAACTGCAAGATAAACTCAGCCAGCCAGACGACCACAAGTTTGACCTGTTCAAGACGCTGCAGGCTCATATCTTGCCATTGACGAATGTTGCCTTCAATAAATCAGGGTCGAGtTTTATAACAGGGAGTTATGACAGGACGTGTAAAATATGGGACACGGCATCAGGAACTGAACTACACACGCTGGAGGGACACAAAAACGTTGTTTATGCCGTCGCATTCAACAACCCCTACGGggATAAGATAGCTACAGGCTCTTTTGATAAAACCTGCCGCTTATGGAGTGTGGAAACAGGGCAGTGTTTCTACACCTTCAGAGGACACACTGCAGAAATAGTGTGCCTGGCCTTTAACCCTCAGAGTACACTGGTTGCCACAGGCAGCATGGACACCACAGTTAAATTATGGGATGTGGAGAGTGGTGTGGAGGTTTCCACCCTGTCTggtcactctgctgaaataatctctctctcctttaacACTGTTGGGAGTCGTTTGGTCACAGGCTCGTTTGATCACACGGTCAGTGTGTGGGACGTTCCTTCAGGCAGacTAGTACACAATTTGAAAGGCCACAGGGGAGAGATCAGCAGTGTTAACTTCAATTGGGATTCTTCCCTCATCGTCACAGCTTCGATGGACAAAACCTGCAAggtttggGATGCTGAAGGTGGTCGGTGTTTGGCTACCCTGACTGGTCATAATGATGAAgttctggatgtttgttttaattttaaaggtCAACTCATCGCTACAGCTTCAGCTGATGgtactTCAAGAGTGTATGATGCACAGACATTCCAATTTGTGTGTAAACTGGAAGGTCATGAAGGAGAGATCTCCAAGGTGTGTTTTAACCCGCAGGGGACGTGTGTGCTGACGGGCAGTGCGGATAAGACGGCGCGTGTGTGGAGCGTAAGCTCCGGCTCATGTTTGCAGGTGCTGGAGGGACACACTGACGAGATTTTCTCCTGCGCATTCAACTACTACGGAGACACCATCATTACAGGCAGTAAGGATAACACCTGCCGGATCTGGCGCTGAGGAGAGTGTTTTGGATTTTGTAGGAAATTCCAGGACATGTCTGATGAATTGAGCAGTAGTTGTTCAGTAATGTGTTCTGATCCAGCCTGGTCAGAGCTGCTGTGACCTTTCTCTccagatcagtgtgtgtgttctctgtgtgagCTCTGCTTTGCAGGACTGCTCTTTAAagcaacagtgtttttttttttaactacacaCCTGAATCACACACCCTTCTCAATCTGTGAAAGTTTGTTTTCAGTATTCTCTAACTAAGTTACTGTTGTGTAGAACAAGGACTAAAAGCAGCTTGTGTTGAAATagtgaatgtgaaatatagTACTCTTCAAATGAAGAAATAATCACACAAAGTGAACATACGTCATCTGTTTTATTGATTCTTGAAAAGATAAATACATTCAGTTATACAGTCACAGATTGGACGGTTGTGTGCTTTCAATGCTGATATTAAAACACTTACTATTA

Function

symbol description
daw1 Acts upstream of or within axonemal dynein complex assembly; cilium-dependent cell motility; and determination of left/right symmetry. Predicted to be located in cilium. Is expressed in several structures, including Kupffer's vesicle; forerunner cell group; nervous system; neural tube; and solid lens vesicle. Orthologous to human DAW1 (dynein assembly factor with WD repeats 1).

NR:

description
dynein assembly factor with WDR repeat domains 1 isoform X1

GO:

id name namespace
GO:0070286 axonemal dynein complex assembly biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0060271 cilium assembly biological_process
GO:0060285 cilium-dependent cell motility biological_process
GO:0005929 cilium cellular_component

KEGG:

id description
K19760 DAW1; dynein assembly factor with WDR repeat domains 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679465.1 True 1771 mRNA 0.46 13 927719 952480

Neighbor

gene id symbol gene type direction distance location
sertad3 NA coding upstream 209014 713909 ~ 718705 (+)
blvrb blvrb,LOC107692505 coding upstream 214698 704355 ~ 713021 (+)
LOC103034482 NA coding upstream 245816 678995 ~ 681903 (+)
LOC103040340 LOC108410554,LOC107566291 coding upstream 363943 551929 ~ 563776 (+)
LOC103033531 NA coding upstream 389841 421528 ~ 537878 (+)
LOC103025301 LOC108414026,LOC105012578,LOC107684602,LOC107711073,LOC107566685,LOC107714437,LOC107679025,LOC100332250 coding downstream 462927 1415407 ~ 1457526 (+)
trip12 trip12,LOC107679016,LOC107710892 coding downstream 614635 1567115 ~ 1622172 (+)
LOC103036673 NA coding downstream 700174 1652654 ~ 1658962 (+)
LOC103036983 NA coding downstream 710498 1662978 ~ 1673194 (+)
tspan4 tspan4,tspan4a,LOC106561924 coding downstream 740118 1692598 ~ 1905714 (+)
G155436 NA non-coding upstream 11479 914396 ~ 916240 (+)
G155357 NA non-coding upstream 110961 814753 ~ 816758 (+)
G155336 NA non-coding upstream 178563 748834 ~ 749156 (+)
G155332 LOC108443044 non-coding upstream 203533 720295 ~ 724186 (+)
G155328 NA non-coding upstream 224607 695526 ~ 703112 (+)
G155457 NA non-coding downstream 62762 1015242 ~ 1034453 (+)
G155455 NA non-coding downstream 156018 1108498 ~ 1113600 (+)
G155478 NA non-coding downstream 187494 1139974 ~ 1148922 (+)
G155483 NA non-coding downstream 196728 1149208 ~ 1236789 (+)
G155487 NA non-coding downstream 208029 1160509 ~ 1168023 (+)
G155206 NA other upstream 774456 149347 ~ 153263 (+)
LOC103044527 NA other downstream 150970 1103450 ~ 1106792 (+)
G155491 akt2,LOC107711004,LOC107557843,LOC107692744,LOC107572728,LOC107714435,LOC108264340 other downstream 234666 1187146 ~ 1278262 (+)
LOC103036073 LOC106581333,LOC102227031,LOC105940324 other downstream 251261 1203741 ~ 1223350 (+)
G155776 NA other downstream 1785881 2738361 ~ 2755112 (+)
LOC111194753 NA other downstream 2658538 3611018 ~ 3614491 (+)

Expression


Co-expression Network