LOC103036983


Basic Information

Item Value
gene id LOC103036983
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 1662978 ~ 1673194 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679474.1
CAGAAAAAATTGGCGCCAAGTCTGAGAACTAGTCAGATTTATCCGCAGTTCAGCAAAAGCGGGTACCGTTTAGCTGCAGAAGTCTTTAGACCTGTTGGAGCGGGCGGTGACCGGCTGTACTGAATACTAACGCTCCATGTCTACAGATATTAACCCAGAATCTGCGGAGAAACAGAGGTCAACAGAATGGCTCTTTCCAAAGCTATTTCATCAGCAAGATACTGGAGGTCATCTGATCAACATATCCACATTAATAAATGCACGTTTGGAGAGCAGGCCAGAAACAAAATGGACAAAGCAAAGCGTGAGCAACAAAGAGATGTTATTTTGCAGTGTGTCTGCGCTCTGTTGAATTCTGGAGGTGGAGTTATCTCAGCAGGGGTTGAAAATGAGGACTATGATTATTGTACCATGAGTCTTGGGGAAGACATGCAGATTTATTTGAAGAGTTTACTGAATCCTGCCAATATTGAGGATTTCATTGAATTTGTTCCATCTGGTAATGCATTACAAATGTATGTGAAGTCTTGGTGTTCACATGATAACAGAGCAAGACTCTGTAGTGTTGACAGTGGCTTAAAGGAGAGATCAGGGACATCCACGCTCTTCATACCCCCTAGTGGGGTTTTGgactttataaaaaagaaacgTCAGACTCTTTATTCGGGTcctcctgcaaaaaaaaagtggacACAAGGTGATGAACTGATCTATCAGAAAGCTGAACAATTCTATGAAAAACGAGAGGCACGTCTTGGTCAGATTTTAGATTTTGGAGAAAGTGTAAATgttgagtttaaaagctttgacAGTGAGAAGAATCTGGAGAAGAGACTTAAGGAGAACCTTCCCAAATACCTTTCAGCTTTTGGAAACACTAAAGGGGGGTTCCTAATCATCGGCGTTGATGACCGAAGCAAAACAGTCGTTGGCTGTGGTCGGGGAATGGATGCCCAGACGATGGAGCAGATGATCCAGGAAATCTGTAACAGAGCACAGAGCCGGGCTTTTCATCTCCTGGACTGTGCACGAAAAGAGGAATGGTCCGTGGATTGTGAAGTTTTCGAAGTTATGGAAAACAGTGGCGAGGAACCTCGATATATTGTTGGATTTAAAGTTCCAGCCTTCTGCTGTGCTGTTTTTGAGGACAATCCAAAATGCTGGCATATTGAGAATGATGCCATTACTCTACTGGACCCAAGAAGCTGGTTAGAGAAAATTCAGCTCTGTGATCCTGGTAATGAGTTGAGCAGCCGTTTTAATAAGGTCTTAAGTCTAAAAGACTCCCCACCTCAGTGCAGAGCGGTCTACAGCACCCAAGACATCACAAAACTCCAAGAAAGAATATTCTCTGTTCGGGAGGAAAATGTGTTGTCCAGGTACATACCACAGGAGCTTCAGAAATACgaaaaacttttaaacattCCTCCCATTCAGTCGAGGAGTGGACCTGGAATTTTAATCATGTCTACCAGCTGGGCCATTGATGTGAACTTACCACGAAACAAGTCTGTCATCTGTGAAGCCCTGCTGATCAGTACAGACTGCTACCCCACACTGTTCTGCTGGGCTGAAGGAGACAGTCCAGAACTCTGGCAGTACGTTAATGACACTGCTTTCAGTCTGAAGCAGAAGTTGGTGAATCTTGCCGGGTACACAGGAAGGCTTTGTGTGATCCCTCGTCTGGTTAACTGCCAGACAGGAGAAGTGATCCAGAATGAGACTGACGGTGCTCCTTCTTATCCAGACAGTTATACTCTGGGCCATATTGAAGAAGTACTGGCTTTACTACGGTCCTTAACTATAGTTGTGATGAGCATCTCTTCACCTCTGAGTGACACACTCGGCTGCGAGTTCTTCAACCTGTTAACTGAGGTGCAGTATACCATTCTAAGTAGTTACAATGGTATTAGAAGTCTATTGATCTACGGGCCTCCTGGTTCAGGAAAGACCCTGATTGCCATGGAAAAAATACGGAGGATAAAAAATTCAGACAACTGTGAGGATACGGACATCCTGTATCTCTGTGAAAATGTGGGATTACGAGACTTTGTAAGGAAGCAGTTCATTTGCTTGTGTGAGACAAGAGCCAGCTTCATGAAGAGTCCTGAGGAGACGTTTTCCAGGGTTAAGCACATAATTGTGGATGAAGGTCAGAACTTTCGCCTGGAGCATGGTGACTGGTACAAGAAGGCAAATAGACTGGTAAGAAATGGTGGAATTTTCTGGATCTTTGTGGACTACTTTCAGAGAAGTCACACAAGCAGTAGTGGTCTGCCACCTCTGAATTCTCAAAATGAAGCTTTTCTCCGTGAGGTTGTACGAAATTCAAAAGAGGTGTTTGATGCCATGTTAGATCTAATTCACCAAATTGCTGATAATTCAAAACCTGAAGAAACAGCACACTTCCAGGATATGGTGAAGAATGTAACACTGAGCCACTCTTTCAGAGGAAAGCTCATCAGACGCACTAATCTTCCATCAGTGGAGACAGAAGTAGTTAAAATAATCAGAAATCTTCTGCAACAAGGGCACTCTGCCAATGACATTGCCGTCCTCTATTCCACTAAAGAAGAGCTTTGTAAAAGGGAGTATGGTgttaaaaaagagaagttgCCTGTCCAGTTTGGCAGTGTAGAGAACGTACACCAGGGCGTGGTTGTGCTGGACACCATTCGTAGATTTTCAGGCCTTGAAAGGAACATTGTGATTTTGGTGGACCCCACTGTTCATTCGTTTCAAAATGAGGTTGGGGTAAATGTTCTCCTCAGTGCGTTCTCCAGAGCGAGAATCAGACTGTATGTGTTGCAGTCAAAGCGTTCAATACTGACACCTAGAATCCCTTTTTAGCTGGTTGTAATAAAGTAATGGTTTGGTTATGATCAGGGCTGGGATTCTTAAAAAGATGTTGATGAACAGCATATGCACAAAAAGGATTAGGTTAAAAATATGTAACAGTTGAGATTTAGAATCTAATGTTTTGACTTGTATATTACATTACTGTTTTGCAGCAGTAGGTATGTTCTTCAGTACTTAAGACACTCTGCTctgtaactttttaataatgtcCACTCACAGCTGATGGTGGAATATCTGTTACCACACTGTTCTTTTTCAGAGCAAAAGCTGGTCAGGTGCTTGATTTTATTCATCTGTGGCAATAGGACTGATTTGAACACt

Function

GO: NA

KEGG:

id description
K24459 SLFN13; schlafen family member 13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679474.1 True 3180 mRNA 0.43 6 1662978 1673194

Neighbor

gene id symbol gene type direction distance location
LOC103036673 NA coding upstream 4016 1652654 ~ 1658962 (+)
trip12 trip12,LOC107679016,LOC107710892 coding upstream 40806 1567115 ~ 1622172 (+)
LOC103025301 LOC108414026,LOC105012578,LOC107684602,LOC107711073,LOC107566685,LOC107714437,LOC107679025,LOC100332250 coding upstream 205452 1415407 ~ 1457526 (+)
daw1 daw1,LOC107717604,LOC107727686,LOC107576612 coding upstream 710498 927719 ~ 952480 (+)
sertad3 NA coding upstream 944273 713909 ~ 718705 (+)
tspan4 tspan4,tspan4a,LOC106561924 coding downstream 19404 1692598 ~ 1905714 (+)
lrch3 lrch3,LOC103027580 coding downstream 998309 2671503 ~ 2720959 (+)
parp9 NA coding downstream 1118845 2792039 ~ 2806754 (+)
LOC103044837 NA coding downstream 1209633 2882827 ~ 2938070 (+)
ndufa10 NA coding downstream 1269580 2942774 ~ 2963551 (+)
G155680 cd151l,LOC108410653,LOC105891114,LOC103368535 non-coding upstream 12043 1643959 ~ 1650935 (+)
G155677 NA non-coding upstream 14352 1631865 ~ 1648626 (+)
G155669 NA non-coding upstream 65363 1597104 ~ 1597615 (+)
G155576 NA non-coding upstream 191556 1470141 ~ 1471422 (+)
G155581 NA non-coding upstream 280841 1381836 ~ 1382137 (+)
G155685 taldo1,LOC107711369,LOC107599753,LOC107728189,LOC107567494 non-coding downstream 5351 1678545 ~ 1680366 (+)
G155717 NA non-coding downstream 90213 1763407 ~ 1765707 (+)
G155718 NA non-coding downstream 101247 1774441 ~ 1776874 (+)
G155722 ddb1,LOC102208280,LOC106561926 non-coding downstream 253240 1926434 ~ 1947167 (+)
G155750 NA non-coding downstream 901886 2575080 ~ 2575382 (+)
G155491 akt2,LOC107711004,LOC107557843,LOC107692744,LOC107572728,LOC107714435,LOC108264340 other upstream 384716 1187146 ~ 1278262 (+)
LOC103036073 LOC106581333,LOC102227031,LOC105940324 other upstream 439628 1203741 ~ 1223350 (+)
LOC103044527 NA other upstream 556186 1103450 ~ 1106792 (+)
G155206 NA other upstream 1509715 149347 ~ 153263 (+)
G155776 NA other downstream 1065167 2738361 ~ 2755112 (+)
LOC111194753 NA other downstream 1937824 3611018 ~ 3614491 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other downstream 2256137 3929331 ~ 3932163 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other downstream 2902474 4575668 ~ 4637290 (+)
G156188 NA other downstream 3483960 5157154 ~ 5157400 (+)

Expression


Co-expression Network