tspan4 (tspan4,tspan4a,LOC106561924)


Basic Information

Item Value
gene id tspan4
gene name tspan4,tspan4a,LOC106561924
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 1692598 ~ 1905714 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679475.1
agaaGGAGCAAAGGAGGGAGTAAGACATTGACGGAGAGGGGGGCGAGAGActaagagcgagagagcaatggaaagagagagagaacgagagagagggagaatgaggGAGCTCCAGGCACTCTGACTGGACTCCGGCTCCAGCTCTGCTTCTGCAGTCTTTCCAGCTTCCTCGGAGGAATACGGTCCAGCTTTACGCTTCCGCAGCCTCTCCATCCTTTCAATACCTGAATGCGGGAATAACCGCACCAGGAGAAACGGAGGGCAGAAGGAGAGCGACAGAGCCAGGGAATAACTTGGCGCTCAATTCCACTGCTGGGACATCTGGATGCGCACCTTTTTTTGCCTGGAGGGAAAAAGAGAACAAgcggaagagagagaagagagtgggagagagagagaggaagagaagaaagatAGGGAACAGGCAAGAGCAAAGAgaggaaaggaaggaaggaaggaaggaaggtcAAGACAGacagtagaaataaaaagacaaacgAAACAGAAACAGGGAAGGGAAGTCCAGAAAGTAAGAAAGGACAAAAAGAGGTGTTCAGAAAAAAAGGAGCAGAGTAAAGAGACAGGTAAAAGAAAGACAGCAAAGAAAAGAATAGAAAGAGCACAGGGAAAAGAAGCTAGTCCACATGACGCTCAAGACGTTGCTGATCCTCTAGACTAGAAAGCTGAATTTGGCTGCTGCACTCTGCAACGAGTTTCTTGGCTCAGATGCTTCCCATCATTTCTGAATTATTGGACTAGCttatctgtccatctgtctgtccatccgtccatccatctgATCTGTCCAGCTGTCCGTtcatgctgtctgtctctcagctTCAGTCGTTATGAGAAGAAGACCTTGGCAAAGCTGCTGGTGTCAGTACATGCATAATAGTTTCTTCAAAGCCGAAGCAGCGGCAAAGAATTTGTGACAGTATATGTGCATGAGTGCATGGGCTCTTTCCGTTTGTGCAACCTGCCCGTCTCCACACTTTCCCATCTGCACACCTGTCTGCCCACCTGTCTCCCCATCCACATGGCAAGGCTCCTTTCAGAAAGCAGTCAAAGTGCCAACTGACGAGATTAACGACTGTTGGACTGTTTAAGCTGCTGTCGGATTGAAGCTTTAGGACCACTTAATCCCATTGGAGGAGCATGTAGGCATTAGATAGCGAGGGAGTAGAAAGCGATTGTGAATAATGGATTGGAGCTTGCTTGGATTTTGAAATTTGAGAGGGGTGATAGGACTTCACATGGATTTGCTGAGGATTCTGCTGGTGCTGAAGAATGTGATGTGACTCTGGAGTGAACTTACCTTGAATTCTGACCTTTTCGGCTTATTGGAAGCTCTTGGAATCATATCGAATAAAACAAACTTGTACCTTTTTACAGGATAGCTGGGACATTTTACGTCTTGAGGTGTGAATCTGAGACTGTAAGCTTGGGTGGTAGGGGCATCTATGCAGTAcagaaactaaaaacatttgtaaTTGGAACAACTGAGGAAAAAACAACTAATTCATCACGTCGATTAAAGTATGGATTTTAGACTGATGCTCTAGAGTTGGTGCAaaatctctgcaagtgtttTAAAAGAATGTGAACTTTTCATTACTAAATAAGacactctctcattctcaaCTGACTACACACCAAACTACAGAGTCTTTTCTCTCTGATTTTCTTCTGCATCAGCTTCTTTTCTCTTAAATTGGTGCTAAAACTTTGCCGAAGTGGGGATCATTTGGCCCCTGGGGGCCCCGGTGCCCGCACCGGCCCCCAACCCCAAGATGCGCCGCTCGAGTACGGACGAGACTCCGTACCGGCGCAGTCCATCTCTAGACAGCAAGCCGGGCTCGCCCCCGCTGCGCTACAGCGGCGAGTACGAGTACCGTAGCGCGCCCTTCGGGTTCGGCTTCCGCACGGCGCCGGGCTCGCAGACGGCCAAAGCGGGATATGCCACAGCGCAGGGCAGGAAGTACGTGGTGTTTTACCTGGACCTCTCCTTCATCTTTCTCCTAGAGCTGCGGCGCTGCAGGATGGCCGAGGGCTGCATGAGGGCCCTGCGATACGCCATGGTCTTCTTCAACCTGCTCTTCTGGctgggGGGATGTGGGATACTGGGAGTGGGGGTGTGGCTGTCAGTCACCCAGGGTAACTTCGCCACACTCTCGTCCTCCTTACCGTCCCTATCCGCCGCCAATCTCCTCATCGCTATGGGAACCATCATCATGGTGATCGGTTGTCTGGGCTGCGTGGGAGCGGTCAAAGAGAGTCGCCCCCTGCTGCTGAGTTTCTTTGTTCTGCTCCTCTTGATTTTCTTTCTGGAGATCCTGTTCATCATCCTCTTCTTTGCTTATCAGGATCAGATTGACCAGTATGctcaaaatgacctgaagaAAGGTCTGCAGCTCTTCGGCACAGAGGGAAACATCGGCCTGACCAACGCCTGGAGCATCGTGCAGACTGATttcCGCTGCTGTGGAGTGACTAATCACACGGACTGGTTCGAGGTGTATAACGCCTCTCGTGTTCCGGACTCCTGCTGTTTGGAGTACAGTGATAACTGCGGCCTGGAGAACCCTGGAACATGGTGGACAGCGCCGTGCTACGAGAGAGTGAAGGGTTGGCTGCAGGAGAATCTGGTGGCTCTGTGGATCTTCGCTCTGTGTGCAGCTCTGACGCAGatTTTAGGGCTGGTGTTCTCCATGACTATGTTCTGTCAGACGGTGAAAGTGGACACGTTCTACGCCTAGAGAACGGTTCTCCTTAGAGAACCTGAAGGACAATGAACTGAATGATCTTAACATCACAGACAATGGAACAAGGGAAAACTGGAGTGCtccttgttttctctctctcttccttcttGTTTCTGCTCATCCTCGTCCACTTTTCCTCCTTCACCACttccctcctcttcttcttcttctacttcttttttttttatataatatctcTCACTGTGCTGGACGTTCCTCCAGACGTTCCTTCAGACGGatcttttcagtgttttctgaagTAATTGAAAGTTTGACGAGAAACTGACGAGAAATGAAAGCTTGCATAACACAGGAACTGATCTTTTTATAACTACTAGCTAGACCGGACTTTTTATTCATacgaagaacaaaaaaaagaagaaaaaacaatcTGTCGTGACTCTACGATTCTACGAGACGTCCTCCTTCAGACCTGCCACTCCACTGAGCCAATCAACGAGCCAAAAAGCTGCAGAGGAGCCCCGCCTCCTTTGTTCCAGCGACGAGACACCAGTAACCAGTTTCCTGTGGTTTTAAATGcctattattttgtttaaaactaAGATATTTATTACAGCaacctataaatatatataaatatatatatatactattctTTCATAATGGATATTACTCTTACAGCACATAGAGCAGCATTGTGAGGAGAGACCGCAATCTGCTCAACACTGACCCCTGCTGCCAGAAGAACAGACTTACATCACAGAATTTacctttacatttatatttacattgacatttacATGTTTAGCACATGCTCATATTGTAGACattgtaaaaagaaaacacacaactGTGTCCTGTGTCCAACATTTATACCAACCTGCTCCagcgagagaaagaaggagaagaagaagaaaagcacAGTTAGATAAAAGCACAACATCCCAGACGAAAAAAAGCTGAGAACTGTTTCTATTCTAGGCTGGAAGTGATGGATTGCATGGTTTAACTggtgaagagaaagagagaaataaagcatGAAATGTT
>XM_022679476.1
CACAATCATGAGGAAGAAGAAGACATGGCAGATACTGCATACAGTTGGACCTTGGCCTCAACATCACCACAAATTCAGTCTGCACCACTTCTCAGCACTGATATCACCTTTACAGCACAAGGACCTGTAGAAGTTCCACAGGCCTCGGTTCTCCTTCAGAACAGTGAAGAGCTGCGGCGCTGCAGGATGGCCGAGGGCTGCATGAGGGCCCTGCGATACGCCATGGTCTTCTTCAACCTGCTCTTCTGGctgggGGGATGTGGGATACTGGGAGTGGGGGTGTGGCTGTCAGTCACCCAGGGTAACTTCGCCACACTCTCGTCCTCCTTACCGTCCCTATCCGCCGCCAATCTCCTCATCGCTATGGGAACCATCATCATGGTGATCGGTTGTCTGGGCTGCGTGGGAGCGGTCAAAGAGAGTCGCCCCCTGCTGCTGAGTTTCTTTGTTCTGCTCCTCTTGATTTTCTTTCTGGAGATCCTGTTCATCATCCTCTTCTTTGCTTATCAGGATCAGATTGACCAGTATGctcaaaatgacctgaagaAAGGTCTGCAGCTCTTCGGCACAGAGGGAAACATCGGCCTGACCAACGCCTGGAGCATCGTGCAGACTGATttcCGCTGCTGTGGAGTGACTAATCACACGGACTGGTTCGAGGTGTATAACGCCTCTCGTGTTCCGGACTCCTGCTGTTTGGAGTACAGTGATAACTGCGGCCTGGAGAACCCTGGAACATGGTGGACAGCGCCGTGCTACGAGAGAGTGAAGGGTTGGCTGCAGGAGAATCTGGTGGCTCTGTGGATCTTCGCTCTGTGTGCAGCTCTGACGCAGatTTTAGGGCTGGTGTTCTCCATGACTATGTTCTGTCAGACGGTGAAAGTGGACACGTTCTACGCCTAGAGAACGGTTCTCCTTAGAGAACCTGAAGGACAATGAACTGAATGATCTTAACATCACAGACAATGGAACAAGGGAAAACTGGAGTGCtccttgttttctctctctcttccttcttGTTTCTGCTCATCCTCGTCCACTTTTCCTCCTTCACCACttccctcctcttcttcttcttctacttcttttttttttatataatatctcTCACTGTGCTGGACGTTCCTCCAGACGTTCCTTCAGACGGatcttttcagtgttttctgaagTAATTGAAAGTTTGACGAGAAACTGACGAGAAATGAAAGCTTGCATAACACAGGAACTGATCTTTTTATAACTACTAGCTAGACCGGACTTTTTATTCATacgaagaacaaaaaaaagaagaaaaaacaatcTGTCGTGACTCTACGATTCTACGAGACGTCCTCCTTCAGACCTGCCACTCCACTGAGCCAATCAACGAGCCAAAAAGCTGCAGAGGAGCCCCGCCTCCTTTGTTCCAGCGACGAGACACCAGTAACCAGTTTCCTGTGGTTTTAAATGcctattattttgtttaaaactaAGATATTTATTACAGCaacctataaatatatataaatatatatatatactattctTTCATAATGGATATTACTCTTACAGCACATAGAGCAGCATTGTGAGGAGAGACCGCAATCTGCTCAACACTGACCCCTGCTGCCAGAAGAACAGACTTACATCACAGAATTTacctttacatttatatttacattgacatttacATGTTTAGCACATGCTCATATTGTAGACattgtaaaaagaaaacacacaactGTGTCCTGTGTCCAACATTTATACCAACCTGCTCCagcgagagaaagaaggagaagaagaagaaaagcacAGTTAGATAAAAGCACAACATCCCAGACGAAAAAAAGCTGAGAACTGTTTCTATTCTAGGCTGGAAGTGATGGATTGCATGGTTTAACTggtgaagagaaagagagaaataaagcatGAAATGTT
>XM_022679477.1
TggaagagtgaaaaagagagagagagagggggagagagaggttTACAGCACCTTGTTCATGCCACTTCTCTTTTATAGGACCTGTAGAAGTTCCACAGGCCTCGGTTCTCCTTCAGAACAGTGAAGAGCTGCGGCGCTGCAGGATGGCCGAGGGCTGCATGAGGGCCCTGCGATACGCCATGGTCTTCTTCAACCTGCTCTTCTGGctgggGGGATGTGGGATACTGGGAGTGGGGGTGTGGCTGTCAGTCACCCAGGGTAACTTCGCCACACTCTCGTCCTCCTTACCGTCCCTATCCGCCGCCAATCTCCTCATCGCTATGGGAACCATCATCATGGTGATCGGTTGTCTGGGCTGCGTGGGAGCGGTCAAAGAGAGTCGCCCCCTGCTGCTGAGTTTCTTTGTTCTGCTCCTCTTGATTTTCTTTCTGGAGATCCTGTTCATCATCCTCTTCTTTGCTTATCAGGATCAGATTGACCAGTATGctcaaaatgacctgaagaAAGGTCTGCAGCTCTTCGGCACAGAGGGAAACATCGGCCTGACCAACGCCTGGAGCATCGTGCAGACTGATttcCGCTGCTGTGGAGTGACTAATCACACGGACTGGTTCGAGGTGTATAACGCCTCTCGTGTTCCGGACTCCTGCTGTTTGGAGTACAGTGATAACTGCGGCCTGGAGAACCCTGGAACATGGTGGACAGCGCCGTGCTACGAGAGAGTGAAGGGTTGGCTGCAGGAGAATCTGGTGGCTCTGTGGATCTTCGCTCTGTGTGCAGCTCTGACGCAGatTTTAGGGCTGGTGTTCTCCATGACTATGTTCTGTCAGACGGTGAAAGTGGACACGTTCTACGCCTAGAGAACGGTTCTCCTTAGAGAACCTGAAGGACAATGAACTGAATGATCTTAACATCACAGACAATGGAACAAGGGAAAACTGGAGTGCtccttgttttctctctctcttccttcttGTTTCTGCTCATCCTCGTCCACTTTTCCTCCTTCACCACttccctcctcttcttcttcttctacttcttttttttttatataatatctcTCACTGTGCTGGACGTTCCTCCAGACGTTCCTTCAGACGGatcttttcagtgttttctgaagTAATTGAAAGTTTGACGAGAAACTGACGAGAAATGAAAGCTTGCATAACACAGGAACTGATCTTTTTATAACTACTAGCTAGACCGGACTTTTTATTCATacgaagaacaaaaaaaagaagaaaaaacaatcTGTCGTGACTCTACGATTCTACGAGACGTCCTCCTTCAGACCTGCCACTCCACTGAGCCAATCAACGAGCCAAAAAGCTGCAGAGGAGCCCCGCCTCCTTTGTTCCAGCGACGAGACACCAGTAACCAGTTTCCTGTGGTTTTAAATGcctattattttgtttaaaactaAGATATTTATTACAGCaacctataaatatatataaatatatatatatactattctTTCATAATGGATATTACTCTTACAGCACATAGAGCAGCATTGTGAGGAGAGACCGCAATCTGCTCAACACTGACCCCTGCTGCCAGAAGAACAGACTTACATCACAGAATTTacctttacatttatatttacattgacatttacATGTTTAGCACATGCTCATATTGTAGACattgtaaaaagaaaacacacaactGTGTCCTGTGTCCAACATTTATACCAACCTGCTCCagcgagagaaagaaggagaagaagaagaaaagcacAGTTAGATAAAAGCACAACATCCCAGACGAAAAAAAGCTGAGAACTGTTTCTATTCTAGGCTGGAAGTGATGGATTGCATGGTTTAACTggtgaagagaaagagagaaataaagcatGAAATGTT

Function

symbol description
tspan4a Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TSPAN4 (tetraspanin 4).
tspan4 Enables antigen binding activity and integrin binding activity. Involved in protein-containing complex assembly. Located in plasma membrane and vesicle.

NR:

description
PREDICTED: tetraspanin-4

GO: NA

KEGG:

id description
K17294 TSPAN4; tetraspanin-4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679475.1 True 3773 mRNA 0.47 7 1755952 1905714
XM_022679476.1 False 1917 mRNA 0.46 9 1692598 1905714
XM_022679477.1 False 1874 mRNA 0.46 8 1693672 1905714

Neighbor

gene id symbol gene type direction distance location
LOC103036983 NA coding upstream 19404 1662978 ~ 1673194 (+)
LOC103036673 NA coding upstream 33636 1652654 ~ 1658962 (+)
trip12 trip12,LOC107679016,LOC107710892 coding upstream 70426 1567115 ~ 1622172 (+)
LOC103025301 LOC108414026,LOC105012578,LOC107684602,LOC107711073,LOC107566685,LOC107714437,LOC107679025,LOC100332250 coding upstream 235072 1415407 ~ 1457526 (+)
daw1 daw1,LOC107717604,LOC107727686,LOC107576612 coding upstream 740118 927719 ~ 952480 (+)
lrch3 lrch3,LOC103027580 coding downstream 765789 2671503 ~ 2720959 (+)
parp9 NA coding downstream 886325 2792039 ~ 2806754 (+)
LOC103044837 NA coding downstream 977113 2882827 ~ 2938070 (+)
ndufa10 NA coding downstream 1037060 2942774 ~ 2963551 (+)
LOC103025504 LOC108425960,LOC108266765 coding downstream 1952792 3858506 ~ 3899215 (+)
G155685 taldo1,LOC107711369,LOC107599753,LOC107728189,LOC107567494 non-coding upstream 12232 1678545 ~ 1680366 (+)
G155680 cd151l,LOC108410653,LOC105891114,LOC103368535 non-coding upstream 41663 1643959 ~ 1650935 (+)
G155677 NA non-coding upstream 43972 1631865 ~ 1648626 (+)
G155669 NA non-coding upstream 94983 1597104 ~ 1597615 (+)
G155576 NA non-coding upstream 221176 1470141 ~ 1471422 (+)
G155722 ddb1,LOC102208280,LOC106561926 non-coding downstream 20720 1926434 ~ 1947167 (+)
G155750 NA non-coding downstream 669366 2575080 ~ 2575382 (+)
G155757 NA non-coding downstream 728448 2634162 ~ 2634608 (+)
G155762 NA non-coding downstream 793317 2699031 ~ 2719738 (+)
G155765 NA non-coding downstream 828748 2734462 ~ 2734664 (+)
G155491 akt2,LOC107711004,LOC107557843,LOC107692744,LOC107572728,LOC107714435,LOC108264340 other upstream 414336 1187146 ~ 1278262 (+)
LOC103036073 LOC106581333,LOC102227031,LOC105940324 other upstream 469248 1203741 ~ 1223350 (+)
LOC103044527 NA other upstream 585806 1103450 ~ 1106792 (+)
G155206 NA other upstream 1539335 149347 ~ 153263 (+)
G155776 NA other downstream 832647 2738361 ~ 2755112 (+)
LOC111194753 NA other downstream 1705304 3611018 ~ 3614491 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other downstream 2023617 3929331 ~ 3932163 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other downstream 2669954 4575668 ~ 4637290 (+)
G156188 NA other downstream 3251440 5157154 ~ 5157400 (+)

Expression


Co-expression Network