gas8 (gas8,LOC108276428)


Basic Information

Item Value
gene id gas8
gene name gas8,LOC108276428
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 6482819 ~ 6488287 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679507.1
CTGAACTGGTTTCCATGGATCTGGTTTGTTGTTTGCAGACCATCAGCACAGGAGAGCTGTAGCTAAACTATCTAAAGCTAAATCACGAGAATATCTGTACAGTTTCTCTGCAGAAACACCCGAATACACACTGCCCTCATCTGACTGACCAGTACTAGctacattacacacatacagcatGCCTCCAAAAAAGAAAGGAGGGAAGACTGCGAAGGGCAAGAAGAGCCCTACAGTGGTGGATGGACTTTCCACAGAGGAAATGTCGAAGGAGCAGTTGGAGGACCACATTGTCCGCTTGCGTGAAGAGCTGGACAGGGAGAGGGAAGAGCGCAACTACTTCCAACTGGAACGAGATAAGATCCACACCTTCTGGGAGATCACCAAAAGACAGCTGGAGGAAAAGAAAGCAGATCTCAGGAACAGGGATCGGGAAATGGAAGAGGCTGAGGAACGCCATCAAGTTGAGATCAAGGTGTACAAACAGAAGGTGAAACACTTGCTGTatgaacagcagaacagcatcGCAGAGCTCAAGACAGAGGGAGTGGTCACCACCAAACTGCTGCAGAAGGAACATGCAGACCTGGAGAATGATCTGCGGAAGGGCATTCGGAATCTAAAAGTGGATATCAAGGAACAGGAGCTTTCCAGTGAAAATCTGATCAAGAGTCTTAAACTGAAACATGATGAGGAAATTACCAAGATCAGGAATGATTTTGAACGACAAGTACGAGAAATAGAGGCTAAATATGAAAAGAAAATGCTGGCTCTGCGCCAGGAGCAGGATCTCAGACGCAAGACTGAAATCGAGGAAATAGAAGAAAGGAAGAACTGCCACATTAACACACTGATACAAAACCATGAGAAAGCTTTCAGTGACATTAAGACCTATTACAATGATATCACTTCCAACAACCTAGCCCTCATCAGTACACTCAAGgagaatgagagagaaatgaagaataaagaaaagagGTTGGAGAAAGAGATGGCAAAGGTGCTGCGGGAGAACAAGCAGCTGACCGAGCCTCTGCAGAAGGCCACTGAGGAAGCCACAGAACTCCGGAAACAGCTGGCCAATTACAATAAAGACAAAAACTCACTAGCGGGAGCCAGAGTTCGAATCAAGGTggcagagaaagaaataaaggaccTGAAATGGGAACATGAAGTATTGGAGCAAAGGTTCAGTAAGGTGCAGCAGGAGCGTGATGAACTGTACCAGAAGTTCACCAAGGCCATCCAGGAGGTGCAGCAGAAGAGCGGCTTTAAGAACCTTCTCCTGGAGAGGAAGCTAGCTGCTCTTACAGACTCCCTGGAGAAGAAAGAGGCTCAGCTCAATGAGGTTCTTGCTGCCTCAAATTTAGACCCCACAGCCCTCAACGTGGTTACTCGCAAGATTGAGGAAGTGATGGACTCTAAAAACATTGCTATTAAGGATCTACAGTATGAACTTGCTCGTGTCTGTAAGGCTCATAATGATCTGTTAAGGTCTTGCGAGTCGAAGCTGAAAGTGTTTGGAATCCCTGTGGAAGAATTAGGATTTAAACCCATGGAGATCAGCATTGCGGGACAGACTCTGGGACAGGGTCCAGCAGGCCTGGTATCTGCACCTCTCTGACAAAACGCCCTACAGACCATTGAACTCTAATCACATACACTTTCACCTCTTTACCTGGAGTGCCTTagatctgtttatttatttcatgcctgtcaaataaaaattatgataatgcattttaaaa

Function

symbol description
gas8 Predicted to enable microtubule binding activity. Involved in cilium movement involved in otolith formation and otolith tethering. Acts upstream of or within muscle cell development and positive regulation of smoothened signaling pathway. Predicted to be located in ciliary basal body and cytoplasm. Predicted to be active in Golgi apparatus and microtubule. Is expressed in neural tube; otic placode; otic vesicle; and pronephric duct. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 33. Orthologous to human GAS8 (growth arrest specific 8).

NR:

description
growth arrest-specific protein 8

GO:

id name namespace
GO:0055001 muscle cell development biological_process
GO:0048870 cell motility biological_process
GO:0045880 positive regulation of smoothened signaling pathway biological_process
GO:0031514 motile cilium cellular_component

KEGG:

id description
K19942 GAS8; growth arrest-specific protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679507.1 True 1745 mRNA 0.46 11 6482819 6488287

Neighbor

gene id symbol gene type direction distance location
dbndd1 dbndd1,dbnd1,LOC106562278 coding upstream 119670 6324821 ~ 6363149 (+)
foxf1 foxf1 coding upstream 177247 6301848 ~ 6305572 (+)
irf8 irf8 coding upstream 371813 6100753 ~ 6111006 (+)
LOC103030962 ds22a,LOC108434600,LOC105892932,LOC106562285 coding upstream 387151 6067215 ~ 6095668 (+)
LOC103031281 cox4i1,LOC103031281,LOC108412231,LOC107663352,LOC107731261,LOC107565335,LOC107572641 coding upstream 417286 6063252 ~ 6065533 (+)
LOC103042367 LOC108435537,LOC105906449,LOC101169526 coding downstream 242883 6731170 ~ 6759468 (+)
zdhhc7 zdhhc7,LOC108435925,LOC107705792,LOC107573093,LOC107736389,LOC107686620,LOC107662857,LOC107601043 coding downstream 320648 6808935 ~ 6817496 (+)
cog8 cog8,LOC107686577,LOC107573089 coding downstream 335342 6823629 ~ 6828644 (+)
wdr59 wdr59,LOC107686576 coding downstream 350591 6838878 ~ 6858524 (+)
LOC103038759 glg1,LOC107686575,LOC107705797,LOC107573092 coding downstream 383574 6871861 ~ 6930402 (+)
G156438 NA non-coding upstream 41542 6441051 ~ 6441277 (+)
G156436 NA non-coding upstream 49957 6432397 ~ 6432862 (+)
G156435 NA non-coding upstream 52193 6430023 ~ 6430626 (+)
G156434 NA non-coding upstream 54526 6428064 ~ 6428293 (+)
G156431 tubb3,LOC107552791,LOC108272015,LOC108431516 non-coding upstream 70595 6409621 ~ 6412224 (+)
G156451 NA non-coding downstream 11564 6499851 ~ 6501174 (+)
G156499 NA non-coding downstream 182634 6670921 ~ 6671194 (+)
G156523 pdpr,LOC106595780 non-coding downstream 280655 6768942 ~ 6774732 (+)
G156562 NA non-coding downstream 379973 6868260 ~ 6869564 (+)
G156623 gcsh,LOC105912338,LOC107662900,LOC100702337,LOC107564915,LOC102203905,LOC102786853 non-coding downstream 538311 7026598 ~ 7030708 (+)
G156188 NA other upstream 1325419 5157154 ~ 5157400 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other upstream 1845529 4575668 ~ 4637290 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other upstream 2550656 3929331 ~ 3932163 (+)
LOC111194753 NA other upstream 2868328 3611018 ~ 3614491 (+)
G155776 NA other upstream 3727707 2738361 ~ 2755112 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other downstream 605220 7093507 ~ 7171625 (+)
LOC111194759 NA other downstream 884089 7372376 ~ 7431568 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other downstream 1112280 7600567 ~ 7606668 (+)
G157055 NA other downstream 2081643 8569930 ~ 8570877 (+)
G157383 NA other downstream 3452542 9940829 ~ 9941805 (+)

Expression


Co-expression Network