LOC107197496 (arf5,zgc:77650,LOC105912562,LOC108439765,LOC108439842,LOC107599983,LOC103033491,LOC107599973)


Basic Information

Item Value
gene id LOC107197496
gene name arf5,zgc:77650,LOC105912562,LOC108439765,LOC108439842,LOC107599983,LOC103033491,LOC107599973
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 7824010 ~ 7828562 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679547.1
CGGTGGCTCTGGTACGTGGCAGCACGCAGGCGCCGAGTTACCGGCTTCAGACCTGAGGAGCAGCGTTACTGTCGGAGGAGCCGCAGTCTGAAGAACCGAGCTACCGACCTCCACCTACAGCCACTGCCTGATTCACCATGGGGCTGACCATTTCCTCACTGTTTGGGAGGCTTTTCGGAAAGAAGCAGATGAGAATACTGATGGTGGGTTTGGATGCAGCAGGTAAAACCACCATTCTCTACAAGTTGAAGCTTGGGGAAATTGTGACGACAATTCCTACCATAGGTTTTAATGTGGAGACTGTAGAGTATAAGAACATCTGCTTCACTGTTTGGGATGTCGGTGGTCAGGATAAAATTCGCCCACTGTGGAGACACTACTTTCAAAACACTCAGGGCCTGATCTTCGTAGTGGACAGTAATGACCGAGAGAGAGTAGCTGAGTCGGCTGAGGAGCTTGCTAAAATGCTGCAAGAAGATGAGCTGAGGGATGCTGTGCTGCTTGTGTTTGCAAACAAACAGGATCTGCCTAATGCCATGGCAGTGAGCGAACTTACAGACAAACTGGGGCTGCAGAGTCTGCGAAGCAGAACGTGGTATGTTCAGGCTACCTGCGCTACACAAGGCACCGGGCTGTATGAAGGACTAGACTGGTTATCCAATGAGCTGTCCAAACGCTAGTGCCTGTGAACGGAAGATAAAAGGGGTGACTGAATTTGAGGAAGAAAGATAACATTAATCTATAGACTCTGTtctaaagagtgtgtgtgagtgtgggtggatgaatgagtgagtgttgGGGCTGATGGGTGATGAGGAGCCAACCGTTATCATGTCTTATCTTTACTTTTCTATTCTTTATTCTGGCTCTgttcttacttttcttttgaGACACATTGTTTTATATGGATTATGCTTTAAATTGCATGTTCACTTAATAACTGTGACAGCATTATGGAAGCAGCAGGGCTTCAGAATGGAAATATTCTGAAGAAAGGACCTTTCCCTACACCAGCGTTGGGCAGTTGTAGTCCTGGAGGCCCGGATTCCTTTACAGTTTTGTGCTTTTCCTGCTTGAGCAGACCTGATTCAACTCAACTGTTAATTGCCAGGTTTACTAGATCTATTAATGCAGGGAAATCAGcaagcagtgttgtactctgtcgCCCACCCCTGCCTTAGATGgttctttataaataaaactgagCCACCTAAGCCCCATCTGAGATTCCACAGATTTGTGCTTCATGTGCTAACTTACTGCTTGTTGTACAACTTTGTTTCCTACagacattaaaatattacattaaacaaTGTTGTaatttagtctctctctctcagctacTTCACTCTGAGGCAGACTCATTCAGCCTTAACTCTGCAAATGTTCTTGATATACCTGCATTACATATTTTCTGATATTTACAGTGATAAATCATGCACTCAGGATTTTAAGGAAGCTACCCATTACTGTTTAACCGGAACTAGCCCCCTCATCTAAGTCAATGTTGGATCCAGAGCTACAGTCATACAGGGTAGAAAACTGGAAACATAACTAGTGAGGAACAGGCACCAAATGTTTGACCAGGAAAGAGATGGAAGCACcttctttacatatttattgCAGCATGCTCCTGCCTTCCACACTGTTGCCTGTATAGGTATTTGGCTGTGAATCTCACACAGTGCAATAAGGTTCCTCTTACCTGTGGTTTACTCTCTTTCTGAAGTGGTGCACATTTGAGCAAACAGAAAGGTGACAAATATAGTCACAAACATTACTGAAGAGGGACAGGCAATGGAAATGCAataataacagtgtgtgtgatgtgttatTGTCTTGTTTTCTCATTGTGTTTGATTCAAATGCTAGCTCAATACTGGAAAATGCcctgtgttttatatgtgttgTATGAAGTTTCACTTGCCCtgcttttcttaaataaaagtttCCTGAAGATTACAAATA

Function

symbol description
arf5 Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be active in cytoplasm and plasma membrane. Is expressed in axial chorda mesoderm; axis; central nervous system; notochord; and polster.
zgc:77650 Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be active in cytoplasm and plasma membrane. Is expressed in notochord and polster. Orthologous to several human genes including ARF5 (ADP ribosylation factor 5).

NR:

description
ADP-ribosylation factor 5

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K07939 ARF4; ADP-ribosylation factor 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679547.1 True 1968 mRNA 0.44 6 7824010 7828562

Neighbor

gene id symbol gene type direction distance location
LOC103034665 LOC108439498 coding upstream 26001 7783636 ~ 7798009 (+)
terb1 NA coding upstream 53707 7755742 ~ 7770303 (+)
LOC103030643 LOC103030643 coding upstream 97060 7720499 ~ 7726950 (+)
LOC103030109 LOC108423680 coding upstream 105296 7712763 ~ 7718714 (+)
LOC103029792 cers3b,LOC103029792,LOC108264168,LOC108426826 coding upstream 121762 7690215 ~ 7702248 (+)
LOC103033491 arf5,zgc:77650,LOC103033491,LOC108439765,LOC108439842,LOC107599983,LOC107599973,LOC105912562 coding downstream 1540 7830102 ~ 7835726 (+)
LOC103032733 LOC108439982 coding downstream 23363 7851925 ~ 7860510 (+)
odf3b NA coding downstream 33510 7862072 ~ 7866578 (+)
rabl2b rabl2b,rabl2,rabl2a,LOC107662875,LOC107600941 coding downstream 46462 7875024 ~ 7880960 (+)
LOC103028908 NA coding downstream 462600 8291162 ~ 8301780 (+)
G156856 pdp2,LOC108423909 non-coding upstream 68346 7752203 ~ 7755664 (+)
G156824 utp15,LOC107559694,LOC107686557,LOC107662854 non-coding upstream 265053 7553653 ~ 7558957 (+)
G156731 LOC108437702,LOC108264175 non-coding upstream 411322 7351997 ~ 7412688 (+)
G156697 ddx11,LOC107686596 non-coding upstream 575550 7245764 ~ 7248460 (+)
G156623 gcsh,LOC105912338,LOC107662900,LOC100702337,LOC107564915,LOC102203905,LOC102786853 non-coding upstream 793302 7026598 ~ 7030708 (+)
G156916 NA non-coding downstream 8193 7836755 ~ 7938030 (+)
LOC107197497 NA non-coding downstream 10164 7838726 ~ 7839633 (+)
LOC107197499 NA non-coding downstream 13095 7841657 ~ 7844823 (+)
LOC107197493 NA non-coding downstream 17921 7846483 ~ 7849878 (+)
G156917 NA non-coding downstream 18053 7846615 ~ 7860640 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other upstream 217342 7600567 ~ 7606668 (+)
LOC111194759 NA other upstream 392442 7372376 ~ 7431568 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other upstream 652385 7093507 ~ 7171625 (+)
G156188 NA other upstream 2666610 5157154 ~ 5157400 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other upstream 3186720 4575668 ~ 4637290 (+)
G157055 NA other downstream 741368 8569930 ~ 8570877 (+)
G157383 NA other downstream 2112267 9940829 ~ 9941805 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other downstream 2744181 10572743 ~ 10591523 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other downstream 2872226 10700788 ~ 10713982 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other downstream 2923137 10751699 ~ 10754698 (+)

Expression


Co-expression Network