rabl2b (rabl2b,rabl2,rabl2a,LOC107662875,LOC107600941)


Basic Information

Item Value
gene id rabl2b
gene name rabl2b,rabl2,rabl2a,LOC107662875,LOC107600941
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 7875024 ~ 7880960 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679549.1
ATGGAAACAGCCAGTCGCATTAGAGACGAGGGGCTAGCGgtctgttagctgttagctgagAGAGAAGTCAACATGTTTTTCGGtttatataagatatttaacagtaaaatgaGACTTTTACTGTCCATTATTCTGTAATTAAAGCCACTGTGGGGTTATATCAGTGGGAGCTGTGTTATATATCGCTTACTAAAGCCTGTTAGATAACTGTTCTGTACCTGTTAGGTGCCCAGTTGTGTtgagctttagctttagctcaggCTAAGTCAGCGTTATTTAATAAACACGGTTGGTGGGGTTTAGTAAAGATGGTGAAAAGCTGACCGGGTGAGGGAGAGTCGTGTCGCTGGCAGAGAACTGTTGGCTGACTGAAGAGCAGACAGACGCTGCTGCTGGCTAACGTTAATCCTGTGGAGGGAGAATGGCGGGGGATGCGAACAGTATTCCTGAGCTGGAGCAGGAAAAATACGACGCAGACGAGCAGGTGAAGATTATCTGCCTCGGAGACAGTGCAGTCGGGAAATCCAAGTTAATGGAAAGGTTCCTCATGGATGGATATCGACCTCAGCAGCTGTCAACCTACGCCCTGACTCTGTACAagtacaccaccaccatcaatGGGAAACCTATTCTAGTTGatttctgGGACACAGCTGGCCAAGAACGATTTCAAAGCATGCACCCCTCTTACTACCACAAAGCGCATGCTTGTATAATGGTCTTTGATGTCCAGAGGAAAGTAACATATAAGAATCTTTCCAACTGGTATAAAGAGCTGCGAGAATACAGACCAGAAATTCCATGCCTTGTGGTGGCGAACAAAATAGATGCTGACATGAGGGTGACGCAGAAGAGCTTTAACTTTGCTAAGAAGCTGGGACTACCGTTCTACTTTGTATCTGCTGCTGATGGCACCAATGTGGTCAAGGTTTTTAAAGATGCGATTAACATGGCTTTGTCCTACAAAAAGAACTCCAGTGACTTTATGGATGAAGTTATGAGAGAACTGGAGAACTTTGAACTGGAGAGCAAAGAAGACTCTTCATCGGATAAAGAGGAAGAATGTAAAGAGGGGAAAACGGATTGATGACCATCTCTCGCTGCTTGTGACAGTAACTCTCATGCTGAATGTTGACCAGAATGTCTTGTCTTTGTATTGCTGTTAAAATCATGGCTGCTCATGCTCTGTCCTGAAGACAAGGTTAATCCACTTGGGACAAAGTTCTACCTCACATATATAAAGAGCTTTTTAATGAATAGTGTCAAACTGAAGGACACATGTTGGAAGTGCAGTGAGGCATTTATATTTCCCAGACAATGAAACTTCTGGAAGGGTGAGTTGGCAGCATGGTGTAAattcacactgtgtgtgtatatctgtaaatATACAGGTGTGAAGAAAGGTTCTGCTGTAGAATGGACATTTTCCCCATTTGTAAAATCATAGTGGGACATCTCAGTAACTGTTAATATTTTGCATTTATCTTTATCTGATACTGTGAGAAGCAACAGTAGACATCTACTGTATTTATACAAGTGGCAGTTCAGGTGCTACATATGGTTCTTTGAgtaatgccatagaagaacctctcttttgttttcatAGAGATCCACGTTTGTAATAAAAggtttaaaagcaaaaagattCTTTACCAGAATAAAGGTTTAAACAGCTGTTTATGAagccaaaagtgttttttctatGTCATTACTCAAAGAAcactttgtagcacctttatttatttcaaatatttagtGAAGCCCCTCATGGCCCCATCTTGCCAGGTAATTGGATGAGATGCACGTGTTTTTatacagctttttaaaatagcATGTGGTAGACAGTGGTAGATTTTAATGTATTTGGTCCAGCAACAGAAAGTGTtcaatattaaaacaacttTACGATGTCCAGTGTATCATTCTGCTCAAACTGTGAATAGGAATTATCATTTGTATCTGtaatgtcctgtgatgcataAGCACTGCATTCGTCCATATACGTCTCTGAAAAATACAGAACCAGAATCTTTGGGCTGGGAATGAAAGTACTAGATGCATTAGACTGGCAAACCATTTCAGCTTTAGCTGTTTATTCAATGAGCCTTTAATGTCAATGTGGAAGCATTTATATGTTCttcaattaaacacattttttatttaa

Function

symbol description
rabl2 Predicted to enable GTPase activity. Predicted to be involved in intracellular protein transport. Predicted to be active in endomembrane system. Orthologous to human RABL2A (RAB, member of RAS oncogene family like 2A) and RABL2B (RAB, member of RAS oncogene family like 2B).
rabl2a Predicted to enable GTPase activity. Predicted to be involved in intracellular protein transport. Predicted to be active in endomembrane system.
rabl2b Predicted to enable GTPase activity. Involved in cilium assembly and intraciliary transport. Located in cytoplasm and microtubule organizing center.

NR:

description
PREDICTED: rab-like protein 2B

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07931 RABL2; Rab-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679549.1 True 2164 mRNA 0.40 8 7875024 7880960

Neighbor

gene id symbol gene type direction distance location
odf3b NA coding upstream 8446 7862072 ~ 7866578 (+)
LOC103032733 LOC108439982 coding upstream 14514 7851925 ~ 7860510 (+)
LOC103033491 arf5,zgc:77650,LOC103033491,LOC108439765,LOC108439842,LOC107599983,LOC107599973,LOC105912562 coding upstream 39298 7830102 ~ 7835726 (+)
LOC107197496 arf5,zgc:77650,LOC105912562,LOC108439765,LOC108439842,LOC107599983,LOC103033491,LOC107599973 coding upstream 46462 7824010 ~ 7828562 (+)
LOC103034665 LOC108439498 coding upstream 77015 7783636 ~ 7798009 (+)
LOC103028908 NA coding downstream 410202 8291162 ~ 8301780 (+)
arsa arsa,LOC100304877,LOC102794702 coding downstream 542706 8423666 ~ 8432053 (+)
pgc LOC108440932,LOC108441008 coding downstream 585913 8466873 ~ 8474471 (+)
chkb chkb,LOC107577700 coding downstream 613880 8494840 ~ 8507495 (+)
LOC103026556 LOC108264446 coding downstream 627444 8508404 ~ 8513431 (+)
G156917 NA non-coding upstream 14384 7846615 ~ 7860640 (+)
LOC107197493 NA non-coding upstream 25146 7846483 ~ 7849878 (+)
LOC107197499 NA non-coding upstream 30201 7841657 ~ 7844823 (+)
LOC107197497 NA non-coding upstream 35391 7838726 ~ 7839633 (+)
G156856 pdp2,LOC108423909 non-coding upstream 119360 7752203 ~ 7755664 (+)
G157019 NA non-coding downstream 475258 8356218 ~ 8357077 (+)
G157022 NA non-coding downstream 480560 8361520 ~ 8361750 (+)
G157027 NA non-coding downstream 551654 8432614 ~ 8438269 (+)
G157052 NA non-coding downstream 685469 8566429 ~ 8567668 (+)
G157054 NA non-coding downstream 687284 8568244 ~ 8568463 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other upstream 268356 7600567 ~ 7606668 (+)
LOC111194759 NA other upstream 443456 7372376 ~ 7431568 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other upstream 703399 7093507 ~ 7171625 (+)
G156188 NA other upstream 2717624 5157154 ~ 5157400 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other upstream 3237734 4575668 ~ 4637290 (+)
G157055 NA other downstream 688970 8569930 ~ 8570877 (+)
G157383 NA other downstream 2059869 9940829 ~ 9941805 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other downstream 2691783 10572743 ~ 10591523 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other downstream 2819828 10700788 ~ 10713982 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other downstream 2870739 10751699 ~ 10754698 (+)

Expression


Co-expression Network