LOC111194761


Basic Information

Item Value
gene id LOC111194761
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 8820102 ~ 8826458 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679569.1
AAAGGGGTCCCATTACCGAGCCATGGGGAACCCCAGGAACAGTGTTCTTTGGTATAAGGATGCTTCATCCAATACAAAAAGAAGTGATTATTCACTTGCAGCTTAATATGTAGATCTCACCCTGTGTTGCATGGCATTGTATTAGTATTAATTCTATAATCAATACCAACACAGACactcatcactagtgattacTGGTGGTTTAAATGTTCTGGTTGTTCGGGGTATATTGtgtgcactggaaaaaaatgtgaCCCAGTGTTTTCCTGAAGACACTCTATGCGCTAATACAGAGCTGTTGTGCCCTCTAGTGGATAACCATGCTCTTACCATTCTTCTCTGCATTCTTCACAGTTTTGAAGGAGAGACGTTGCGCAACAGGAGAACAAACAATCTGAACTTCCTTGTTATTAGTAAGTTTCGTTTCTGAGGAAGCAGAAGCTGCCGTTCAAGCTGGAGCAGAGATCATGGCAGGCAAATCGTTCTCTGATGAAGACTTTGCTTGTCCTGTATGCTATGAGATCTTCACTGAGCCTGTAGTTCTGCTGTGCTCTCACACCATTTGTAAAGCATGTCTGACTCATTCCTGGGAGGAGAAAGGCTTTCGAGAGTGTCCCATTTGTAGAAAAATCTCACTGATTGCAGATCCTCCTTGCAATCTTGCTCTGAAGAACCTCTGTGAAGCTTTCCTGAAAGAGCGAAGCCAGAGATCTTCACAGGGTCCTGAGATCCGCTGTAACCTCCACAATGAGCTGCTGAAGCTCTTCTGCCTGGTTGACCAACAGCCGATTTGTGTGGTGTGCCGGGACTCTAACAAGCATCAGACTCACAGCTGTCGCACAGCTGATGAAGCAGCAGTTGATCTCAAGGAGGAGCTCAGGCGTAAACTGAAGCCTCTACTGGAGAAGTTAAAAGTATTTGAAGattttctgcaaaaatgcaCTGAAACAGCAGAACACACAAAGTTTCAGGCAGAGAAGACGGAGAAGGAGATTAAGGAGGACTTTTCAAAGCTTCATCAGTTTCTACAACAAGAAGAAGCAGCCAGGATAGCAGTGCTGAGGGCAGAAAATGAGCAGAAAGGGCAGATGTTAAAGAAAAAGATTGAGGAGATGAACAGAGAGATACTGTGCCTTACAGCAACCATTAGATCTGTTACTGAGCAGATCCAAGCAGACCACATCTCATTCCTACAGAGGTACAAAGCCACTCTGAAAAGaacgcAGTGTAACCTGAAGGATCCTGAGACCCTCTCTGGAGCTCTGATTGATGTGGCAAAGCACCTGGGCAACCTGAAGTTCAGAGTGTGGGAGAAGATGAAGGATAtggttaaatacaATCCTGTGACTATGGACCCCAACACAGCACACTCCAGTCTCTACGTGTCTCATGATTTGAGCAGCATGCGTCTGAATTCTGTCCAACAGGCCTGTCCTGCCAACCCAGAGAGATTCAGCTTCTACCAGGTCCTGCTGAGCTCTGAGGTCTTTGGGCCAGGGTGTCATTACTGGGATGTAGAGGTGGGAAAGTGTGAAGAGTGGGCTTTAGGAGTGTGTACAGAGTCTGCCCACAGAGGAGAGAGGTTCCTGGAGAGCGGTGTGTGGCGTGTTTGGTATTGCTCTGGAGTGTACCGGGCTGACTCGCCTGAAAAGCGCTACGTCACCCTTAGAGTGAAGCAGAGGATCCAGAGGGTCAGAGTGCTTCTGGACTGGAGTGGAGGACAGCTCTTATTCATCGACCCTTTGACTAACAAACAACTACACAGCTTCACGCACAGCTTCACTGAGAGAGTCTACGCCACCTTTGCAAATGGTAGTTCCAGCCATTTTTTGAGAATCCTGCCATTGAGGGCTTGTTTAATCCTGAAGGACAGCAGTACAGTGTAAAGCTAAAGATAAACTTGAGTTTGGCTTTGTGTGCAGGTAGACAACTGGCTGCTTTGTGAGAATAACTGCTCACTTTATAGTGCACGAGTGGAGAGGCTTCCAATTGCCGCAACAGCAAAGACAGATTAGAAAGATGCGAGTAGgcatttttctgcttttgtttattgttaatttcTGAGGATTCGCACAATATCTCTAGCCTAAATATATCTGAAACAAATTAGGGGTAAATGGTTATGAATAGGGCTGAGTATTGACAAGAACTTGTCATTgatccaaagttttttttattattattatatacagccctggaaaaaattaagagaccacttcagttcctgaatcagttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679569.1 True 2236 mRNA 0.45 6 8820102 8826458

Neighbor

gene id symbol gene type direction distance location
prpf18 prpf18,LOC107671164,LOC107719961 coding upstream 254604 8555188 ~ 8565498 (+)
cpt1b cpt1b,LOC100329197,LOC107599889,LOC107671150,LOC107686536 coding upstream 286935 8520018 ~ 8533167 (+)
LOC103026556 LOC108264446 coding upstream 306671 8508404 ~ 8513431 (+)
chkb chkb,LOC107577700 coding upstream 312607 8494840 ~ 8507495 (+)
pgc LOC108440932,LOC108441008 coding upstream 345631 8466873 ~ 8474471 (+)
LOC103043520 NA coding downstream 4971 8831429 ~ 8836613 (+)
LOC103030146 impdh1,impdh1a,LOC108442450,LOC107559456,LOC107665545,LOC107710381,LOC107599814,LOC106561215,LOC103030146 coding downstream 18518 8844976 ~ 8871398 (+)
LOC103031618 NA coding downstream 71119 8897577 ~ 8902959 (+)
rbm28 NA coding downstream 78277 8904735 ~ 8919978 (+)
LOC111194832 NA coding downstream 283636 9110094 ~ 9114054 (+)
G157069 NA non-coding upstream 136999 8680809 ~ 8683103 (+)
G157064 frmd4a non-coding upstream 212081 8603589 ~ 8608021 (+)
G157054 NA non-coding upstream 251639 8568244 ~ 8568463 (+)
G157052 NA non-coding upstream 252434 8566429 ~ 8567668 (+)
G157027 NA non-coding upstream 381833 8432614 ~ 8438269 (+)
G157210 NA non-coding downstream 65632 8892090 ~ 8894941 (+)
G157224 NA non-coding downstream 122367 8948825 ~ 8949097 (+)
G157226 NA non-coding downstream 139713 8966171 ~ 8966371 (+)
G157305 NA non-coding downstream 517373 9343831 ~ 9344700 (+)
G157311 NA non-coding downstream 566844 9393302 ~ 9393516 (+)
G157055 NA other upstream 249225 8569930 ~ 8570877 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other upstream 1213434 7600567 ~ 7606668 (+)
LOC111194759 NA other upstream 1388534 7372376 ~ 7431568 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other upstream 1648477 7093507 ~ 7171625 (+)
G156188 NA other upstream 3662702 5157154 ~ 5157400 (+)
G157383 NA other downstream 1114371 9940829 ~ 9941805 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other downstream 1746285 10572743 ~ 10591523 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other downstream 1874330 10700788 ~ 10713982 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other downstream 1925241 10751699 ~ 10754698 (+)
hipk2 hipk2,LOC107722467 other downstream 2204607 11031065 ~ 11143471 (+)

Expression


Co-expression Network