LOC111194762


Basic Information

Item Value
gene id LOC111194762
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 9113979 ~ 9116076 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679575.1
ACTGCTGAGAGTCttgagagagtaagagtgacCCTTCTTTCAGAAGGCAAAAAGAAGAACAATGATCAGACATTGAAAGTGCTAATGGACAAGACCTTTGCACTGAgaaggcatgaagttatccacgAATCGCCTCTTATCGCAGACTTCAAGACAAGATGGCCTGCTCTTTTTAGAACAACAGAGGTAAGCGCTGAATTTGAGCGGATTACAACAGTCCCTCTTCTGTCGCGGTTCTTTTCCAAGCTGGATCGTCACTCTGCAAAACTTCTCAAAGTGTTCGCCAAAAGAGGAGGAGTCCAAGGACGAAAGATCATGCAACATGTGACGGCCATGGCACAGAGTGACAACGTCGAAGTTAAAAGAGAATCAGTCCTCAGAGCTCTGTCTCTCTACTTGAATGAAGAGCCGGATGATCTAATTCGTGAATATATGgTTTCTGATGTGGCCGCTATTCAGCAGGGAATTGACGGGACTGTCTTGGGCATCTATGCAACCAGAGTTGAGGGAGCTGAAGTCATGGACCATCCTGCAGATGTAGGAGTTGTAATCGAAGGTGTTGTGGTTCTGGAAGACCTTGCCAGTGTGTCTCTTGCCATTGCACTGTTGTTTGGATTAATTTATGCCTTTAACTTGAGTTACCCTCCCAAATTCAGGTACACTTTTGAGGTAATCCAGAAACTCTTTCTGGAACTAGATGCTAACAAACTGTCACACAAAGTTCAGGCTTTGAAAACCAAGCTCTTCAGTGAGTTGGAGTAGGGTTAGTTTATAATGGTCTTGATTTCGGAAGTATTAGGCTTGTGACTAATTATATGCTACAGTTTGTACTGGATTATTATTGAGGATATTGTTGTTGCGTTTTGCTGACCGATTTAGATAAAGCACTTTAGTTAAATGTATGTTcatgtttaaacatttcaaGATCTGATTTTTGTTCACAATCAGAatggagcattttttttttcaggcaccTTCAGAGTGATGCTTTGGGGTAtacttattattttactttctagAAGTTTTGAACAGACATTTTGGATGTGTAGCACTTACTGGCATATGCTGTTAAAATTTGGAAGGACAAATATTTGATTACTACATTTATGTGAGAGCTCGTTAAAATAtcttgttaaaatattaaaatctaaaaaaaaactctaaatttGGTAGAACAAATATTTGATGATTACTACATTTATGTCAGGGttaattgatatttatatcccattaaaatatataaaacgcATCATATTTTCAACTTCCTAGGCAAAAATATCTGATTGCGTTTTTGTATTTTACCTGATTTTAGCTAATCACTTCATAATTAGAATATCCACTTTTGTGTGGCCTgaacattaaacataatta
>XM_022679576.1
ACTGCTGAGAGTCttgagagagtaagagtgacCCTTCTTTCAGAAGGCAAAAAGAAGAACAATGATCAGACATTGAAAGTGCTAATGGACAAGACCTTTGCACTGAgaaggcatgaagttatccacgAATCGCCTCTTATCGCAGACTTCAAGACAAGATGGCCTGCTCTTTTTAGAACAACAGAGGTAAGCGCTGAATTTGAGCGGATTACAACAGTCCCTCTTCTGTCGCGGTTCTTTTCCAAGCTGGATCGTCACTCTGCAAAACTTCTCAAAGTGTTCGCCAAAAGAGGAGGAGTCCAAGGACGAAAGATCATGCAACATGTGACGGCCATGGCACAGgTTTCTGATGTGGCCGCTATTCAGCAGGGAATTGACGGGACTGTCTTGGGCATCTATGCAACCAGAGTTGAGGGAGCTGAAGTCATGGACCATCCTGCAGATGTAGGAGTTGTAATCGAAGGTGTTGTGGTTCTGGAAGACCTTGCCAGTGTGTCTCTTGCCATTGCACTGTTGTTTGGATTAATTTATGCCTTTAACTTGAGTTACCCTCCCAAATTCAGGTACACTTTTGAGGTAATCCAGAAACTCTTTCTGGAACTAGATGCTAACAAACTGTCACACAAAGTTCAGGCTTTGAAAACCAAGCTCTTCAGTGAGTTGGAGTAGGGTTAGTTTATAATGGTCTTGATTTCGGAAGTATTAGGCTTGTGACTAATTATATGCTACAGTTTGTACTGGATTATTATTGAGGATATTGTTGTTGCGTTTTGCTGACCGATTTAGATAAAGCACTTTAGTTAAATGTATGTTcatgtttaaacatttcaaGATCTGATTTTTGTTCACAATCAGAatggagcattttttttttcaggcaccTTCAGAGTGATGCTTTGGGGTAtacttattattttactttctagAAGTTTTGAACAGACATTTTGGATGTGTAGCACTTACTGGCATATGCTGTTAAAATTTGGAAGGACAAATATTTGATTACTACATTTATGTGAGAGCTCGTTAAAATAtcttgttaaaatattaaaatctaaaaaaaaactctaaatttGGTAGAACAAATATTTGATGATTACTACATTTATGTCAGGGttaattgatatttatatcccattaaaatatataaaacgcATCATATTTTCAACTTCCTAGGCAAAAATATCTGATTGCGTTTTTGTATTTTACCTGATTTTAGCTAATCACTTCATAATTAGAATATCCACTTTTGTGTGGCCTgaacattaaacataatta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679575.1 True 1371 mRNA 0.38 4 9113979 9116076
XM_022679576.1 False 1278 mRNA 0.38 3 9113979 9116076

Neighbor

gene id symbol gene type direction distance location
rbm28 NA coding upstream 194001 8904735 ~ 8919978 (+)
LOC103031618 NA coding upstream 211020 8897577 ~ 8902959 (+)
LOC103030146 impdh1,impdh1a,LOC108442450,LOC107559456,LOC107665545,LOC107710381,LOC107599814,LOC106561215,LOC103030146 coding upstream 242581 8844976 ~ 8871398 (+)
LOC103043520 NA coding upstream 277366 8831429 ~ 8836613 (+)
LOC111194761 NA coding upstream 287521 8820102 ~ 8826458 (+)
lrrc4 lrrc4.2,LOC103033525,LOC108442864,LOC108263937,LOC107559378,LOC107594935,LOC107738417,LOC107672593,LOC107673147,LOC107723939 coding downstream 178497 9294573 ~ 9299415 (+)
LOC103035018 grm3,LOC108444204,LOC108263977,LOC107671160,LOC107665551,LOC107559415 coding downstream 1349713 10465789 ~ 10529492 (+)
cmip cmip,LOC107684659,LOC106573687,LOC106560887 coding downstream 1479326 10595402 ~ 10628479 (+)
tmem5 tmem5,LOC107722461,LOC107738400,LOC107587049,LOC107559810 coding downstream 1642164 10758240 ~ 10764110 (+)
srgap1 srgap1,srgap1a,LOC107670373,LOC108264626,LOC107684655 coding downstream 1649939 10766015 ~ 10901559 (+)
G157226 NA non-coding upstream 147608 8966171 ~ 8966371 (+)
G157224 NA non-coding upstream 164882 8948825 ~ 8949097 (+)
G157210 NA non-coding upstream 219038 8892090 ~ 8894941 (+)
G157069 NA non-coding upstream 430876 8680809 ~ 8683103 (+)
G157064 frmd4a non-coding upstream 505958 8603589 ~ 8608021 (+)
G157305 NA non-coding downstream 227755 9343831 ~ 9344700 (+)
G157311 NA non-coding downstream 277226 9393302 ~ 9393516 (+)
G157312 NA non-coding downstream 387998 9504074 ~ 9507133 (+)
G157334 NA non-coding downstream 469130 9585206 ~ 9590572 (+)
G157387 NA non-coding downstream 911443 10027519 ~ 10027906 (+)
G157055 NA other upstream 543102 8569930 ~ 8570877 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other upstream 1507311 7600567 ~ 7606668 (+)
LOC111194759 NA other upstream 1682411 7372376 ~ 7431568 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other upstream 1942354 7093507 ~ 7171625 (+)
G156188 NA other upstream 3956579 5157154 ~ 5157400 (+)
G157383 NA other downstream 824753 9940829 ~ 9941805 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other downstream 1456667 10572743 ~ 10591523 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other downstream 1584712 10700788 ~ 10713982 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other downstream 1635623 10751699 ~ 10754698 (+)
hipk2 hipk2,LOC107722467 other downstream 1914989 11031065 ~ 11143471 (+)

Expression


Co-expression Network