LOC103045650



Basic Information


Item Value
gene id LOC103045650
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 10902953 ~ 10912967 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_022679593.1
GCAGTGGGAGCAGCAGTGCAGAAAGCGCTCTggtgaacagcagcagcagctgaaagTCGTGTAGCTACAAGCATGTCTTCTTCACTGTCAGCCTACATGTACCGCAGTGTCTGTCAGCAGATGGGCAGTGTGGATTTTAAAACCCTGGATCAGATGTTAAGACAGCACTTTACAATAGCTGATGAAGTTCTGCTGGACGTTCTCAACGACTTCGACAAGTTCCTGGTTGTTAAAGGTAAAGAGAAGAGGGGAGAACTCCTGCTGAGTCCAGACTCTGAGATCATCGCTAAAACAGACCTCAGACTGTGCCAAAACCAGTCCGGTCCGTGTGTGAACTGCCACGACCTGCACCTCTGCAGGTATTACGTGTGTGGAAACTGCACGTATGGGGCAAAATGCCATAAAGTCCACGCCATAGATCACTCCTATAACACAGTTATTCTGAACAAAGCAGGACTTCAGTTCCTTGGGAAGACTGAACTTTTTCAGCTGTTGCTGCAAAATGACCCTTCCTTACTGCCAGAGgTTTGCTCTCATTATAATAAAGGGAATGGAGAACATGGCAGTTGTAAGTTTCCGAAGTCCTGCAAAAACCTGCACCTCTGCCAGCACTTCCTGCAGGATGACTGTAAATTTGCAGCTGCTTGTAAACGAGCTCATTCCTTTGATGCCGCCGCCATGAAAATCCTGAATGCCAGAGGACTCAGCCCCGAAAACATTCACAACGTCTGCAAGATCTACAAAAACAGGTTTCTGATCTCCTCCCACAAAGAAAGGGGACCTTTTCTAATACAGCCTGAGAAAGAAACCCCATCTGTTCCCATAGCAGCTTCTCTATCTGTGGGACAAAGTCCAAAGCAGAGCAGCAAGTCAGTGAGTGAAATTGACTCGAATGAAATCTGCCTTTTCTTCATCCGTAAAGGATGCAGCTTTAAAGACAAGTGTGTTCGTGTTCATTATCACTTGCCTTATAAATGGCAGGTTTTGGATAAGGATGGAAAGACATGGAAAGACTTGAATAATGTGGAGGAGATTGAGAAGGCCTTCTGTAACCCTGCTAATGATGcgagTCCAGGACCTCAGGCAGTAAACTTCATCTCGATGACATGTGGAAGGGCACCAGTGCGGCGTCTATCCACAGCATCTTCAATTACCAAACCTCCCAATTTTATCTTGACCACAGAGTGGCTCTGGTACTGGAAGAACGAACAAGGAATTTGGACTGAATACGGTCAAGGGATGGACACAAAGCATGAAACCCCTCTCACCTCTCAGTCTCTGGAGAACGTTTACCAAGCTGACCCTCAAAGTGAAGTTCCTGTCAGTTCTGAGAACCACACTTATGTTCTGTATTTGAAAGATATGTTTCAGCAAAACGTTCTGTACAAAACCAAAAGAGAGATTCGGAGAAGGCCTCGGTTTGTCTCAGGTCTCGAGGTGGAGAACAAGCTGAAAAGTgaaagctccagcagctcctctaCAGTGGTGGTTCCTGCACACTGGGATAGAGGAGCCCTGCCTGACTTTTCCTACAAGTTGGTTCCTTTGGCCAAAACAGATGCGGAGTTCCTGATGCTAGAGAAGCTGTTTCAGCAGACTATGCCTAAATACACAATCAGCAGCATCCAGAGAAACCAGAACAGCTCCCTGTGGAGGGTCTACCAGTGGCAGAAAGAACAGATGAAAGAGAGGAATGGAGGGAGAAATGTGGAGGAACGCCTATTGTTCCACGGTACAGATCAATCTCTAGTACCAGCCATCTGTGAGCAGAACTTTGACTGGAGGATCTGTGGGACTCACGGCACAGTATATGGTAAAGgGAGTTATTTTGCCCGAGATGCCTCCTACTCTGATGCGTATGCTCAGCCAGGAAGCAACACCAAAAAGACCATGTTTGTGGCACGGGTTCTGGTGGGCCACTACACCTTGGGCAACAGTAAAGTTGTTCGCCCACCTGCTAAAACTGCGGGCAAAGGCTATTATGACAGCTGTGTTGATGACCAAAGCAATCCCAGCATTTTTGTGATCTTTGAGAAGTACCAGATCTACCCTGAGTTCATCATTGAGTACGGTCCAGAGCAGTCCAGATGTTTGATTTCTTAAGCATAAACAGAGATGTGAGGATTGTGGTACAGCTTAGTTTAAAGACTTATTTCAGCACATTAGGTATATTTTTACttaacacattttatatttaaatacatcttatatatgtattttacagaacattaaacaaaatagcTGCAGTCGACATGTTAATCTTAAATAAGTCTAACCTGTGTGAGGTGTTAggttttttatttaagctttataaTTTGACTATTTATGCTCAAATCTGTACTGTGATGCACTTGTGTGATAATCAAAACGTATTATCATGATTAatattcttcttattcttcttcttcttattattattattattatgattattatgattattattgtttagagAAGCACTTTTCTGACCTCAATTTTAACTCACTAATTCACAAACGTCTGGATGAAGATACTCCACAAGGGGATGCTGTTAGTACCTCAATAGCTCAATAGTACCTCAATAGCTTTAGGCACTTGACACTACGTGTCCTTGTTTTTACCATTACTAGCTGCTTAAAATTGGTACTGGCaaaatattttctgttatttacACTATATAAACAATGCATTACAAATGTATGTATAGAAAGTATACAAGTGATATTTACTATTAcagacattgatttttttatgatgttatCATCATATGTAACTATAAAAACTAATTCCTCTAATTATTTAATGGAGTGGTGTATGATGCGTTATGAATTGCTGAAAAAAAACCCAATGTGATTTACTTGTATTTGTAGAATTATGTAACCACCGAATGCATAAACTGATCACTTCTGTGAAGTACAACAGCTTTCTGAATGCCAGCTGTGACTGACACTATTCTTAAATGAAGATAAATAAATCATGAGTGAAGGAAAAACTATTAGTATGTTTTGAATCAGTGCTTAATTAAACATGTACAATGTATTCA

Function


GO: NA

KEGG:

id description
K15259 PARP7S; poly [ADP-ribose] polymerase 7/11/12/13

RNA


RNA id representative length rna type GC content exon number start site end site
XM_022679593.1 True 3022 mRNA 0.42 12 10902953 10912967

Neighbor


gene id symbol gene type direction distance location
srgap1 srgap1,srgap1a,LOC107670373,LOC108264626,LOC107684655 coding upstream 1394 10766015 ~ 10901559 (+)
tmem5 tmem5,LOC107722461,LOC107738400,LOC107587049,LOC107559810 coding upstream 138843 10758240 ~ 10764110 (+)
cmip cmip,LOC107684659,LOC106573687,LOC106560887 coding upstream 274474 10595402 ~ 10628479 (+)
LOC103035018 grm3,LOC108444204,LOC108263977,LOC107671160,LOC107665551,LOC107559415 coding upstream 373461 10465789 ~ 10529492 (+)
lrrc4 lrrc4.2,LOC103033525,LOC108442864,LOC108263937,LOC107559378,LOC107594935,LOC107738417,LOC107672593,LOC107673147,LOC107723939 coding upstream 1603538 9294573 ~ 9299415 (+)
LOC103040136 NA coding downstream 4485 10917452 ~ 10924422 (+)
LOC103046273 NA coding downstream 233195 11146162 ~ 11206745 (+)
fam107b fam107b,LOC107722469,LOC107738407,LOC102787157 coding downstream 318994 11231961 ~ 11266320 (+)
nup205 nup205,LOC107684652 coding downstream 356048 11269015 ~ 11293673 (+)
LOC103046882 zgc:110789,LOC108413851,LOC107673135,LOC107738439,LOC107722464,LOC107670368,LOC108264853,LOC107587050 coding downstream 537955 11450922 ~ 11461645 (+)
G157546 NA non-coding upstream 20485 10881730 ~ 10882468 (+)
G157540 LOC103039511,LOC100702099,LOC100707594,LOC105905159,LOC108412826,LOC105889141,LOC102291458 non-coding upstream 146291 10755079 ~ 10756662 (+)
G157523 NA non-coding upstream 202581 10700157 ~ 10700372 (+)
G157513 NA non-coding upstream 242526 10659793 ~ 10660427 (+)
G157483 NA non-coding upstream 367975 10506917 ~ 10534978 (+)
G157557 NA non-coding downstream 105448 11018415 ~ 11018813 (+)
G157703 NA non-coding downstream 397048 11310015 ~ 11314603 (+)
G157761 NA non-coding downstream 554959 11467926 ~ 11468139 (+)
G157764 NA non-coding downstream 575093 11488060 ~ 11489560 (+)
G157766 NA non-coding downstream 579272 11492239 ~ 11492486 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other upstream 148255 10751699 ~ 10754698 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other upstream 188971 10700788 ~ 10713982 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other upstream 311430 10572743 ~ 10591523 (+)
G157383 NA other upstream 961148 9940829 ~ 9941805 (+)
G157055 NA other upstream 2332076 8569930 ~ 8570877 (+)
hipk2 hipk2,LOC107722467 other downstream 118098 11031065 ~ 11143471 (+)
LOC103031933 ttc38,LOC103031933,LOC108414465,LOC104940279,LOC106573176,LOC100694777,LOC107722483,LOC107673144 other downstream 1427039 12340006 ~ 12366770 (+)
hsbp1 hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299 other downstream 1822552 12735519 ~ 12741002 (+)
LOC107197649 LOC108416831 other downstream 2820978 13733945 ~ 13742500 (+)
LOC103042073 LOC103042073,LOC108418727 other downstream 3060854 13973821 ~ 13980025 (+)

Expression



Co-expression Network