LOC103040136


Basic Information

Item Value
gene id LOC103040136
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 10917452 ~ 10924422 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679594.1
ATTTCTCGAAATCGAGAATAAACAGACCAGCTGAGAGTCAGGAAGTTTAAATACCAGCAGACAGCAGAAGCTTCATTTAACCAGCTCGGGTTTAACATGGCGAAGATCGTGTCTAACCGTATAATGCAGCTGCTGTGTGATAACATGGGCTGTCTGGAGCTGGGGCAGGTGGACAGCGTGCTGAAGAAGAGCTACACGGTGGATGAAGGTCTGCTGAAGAGGCTGCTGTCTGACCGCAGCAGTTTTGAGATGGTGGAGCAGAGCACCGGGCCGCTGCTGGTGTCCAGGACTGACCTGCGAGTCTGCTGCAAACAGGGCGACGACTGCCAGGACTGCGGCCAGCTGCACATCTGCAGGTATCTGGTGTGTGGAAAGTGCAAATTTGGGTTTAAGTGCAAGAATTCACATGACATAAAATCTCAGCATAATTCTGCACTCCTGGCATTAAAAAATCTCAGTAACCTTGAAGAAGCTCAGCTGTTCCAACTGTTGCTGCAGAATGACCCAACTCTTCTTCCAGAGGTGTGCCCTCATTATAATATAGGGAATGGAGAACATGGCAGTTGTAAGTTTTCGATGACCTGCAAAAACCTGCACCTCTGCCAGCACTTCCTGCAGGATGACTGTAAATTTGGAGCTGCTTGTAAACGGGCTCATTCCTTTGATGCCGCCGCCATGAAAATCCTGAATGCCAGAGGACTCAGCCCCGAAAACCTTCGCAACCTTCACAAAATATACAAGAACAGATTTCTCCTGGCTGGGAATGATGAGAAACATGCAGCCAAACCAGTGGAGAAAGGCAAACAGACGAGCAGGCAGCACTCCAGTAACTCTGTGAGTGAGGCCGACCGCAGTGAAATCTGTCTGTACTTTGTTCGTCAGGGATGCAGTTTTAAAGGGAAATGTGTCCGTGTTCATCATGATCGACCTTATAAATGGGAGGTTTTAGCCCAGGACGGAGTGACATGGACACACATGCCTAATGAAGAGGATATTGAGCGAGCCTACTGTAACCCAGCTAATGAGAAGAGCTCTGGACCTCAGCCAGTGAACTTTTCCTCAATGACGTGTGGAGGAGCTTCAGTACGTCGACTTTCTACAGCATCGTCCGTTACCAAACCTCCTCACTTCATCCTGACCACTGAGTGGCTATGGTACTGGGAGGATGAAAAAGGACAATGGAATGAATATGGTCATGGGGACGATGGAAAAAATGTGTCCTCAGTGTCCTCGAAAGTGTTGGAGAATTTGTTTCTCGCTGAAGTTGAAACTGAACTCACCTTCAGCGTGGGTAATCAAAACTATGTGCTCAACCTGAAAGATATGTGTCAGCAAAACATAAAGTACAAGACAAAAAGAAAGGTTCGAAGGAGGCCGCAATTCGTTTCAGCTCAAGACGTGAAGGGCAAATTGAAAAGTGACACCCAGGaaagctccagctcctcctctgtGGAAGTTCCTGCACACTGGGACAAAGGGACCCCAACTGATCACTCCTACAAGattgttcCTCTGTTAAAGTCTGCGACTGATTACAAAACAGTAGAAATGCTGTTTAAGCGGACAATGTACACAAGCACCATCCACAGCATCAGGAGAGTGCAGAATCCATCTCTCTGGAGAGTCTTTCAGTGGCAGAAAGAGCAGATGAAGGAGAGGAATGGCGGGAAGGATGTGGATGAACGTTACCTGTTCCATGGTACAGATCAGCATTTAATAGATGCCATCTGTGATCAGAACTTCGACTGGAGGGTCTGTGGTGTTCATGGGACACTTTATGGGAAAGGAAGCTATTTTGCCAGAGATGCCAAGTATTCAGATAAATACGCTAAATCCAGTGGCAGGACCAAGATGATGTTTGTGGCTCTCGTCCTTGTTGGCGAATTAACCAGAGGCAAAACAACCTACCTACGACCCCCACAGAAGAATGGCGGGCGGGGCTTTTACGATAGCTGTGTGGACAACGAATCCAACCCAGCTATTTTTGTCATCTTTGAGAAGTATCAGATCTATCCTGAGTACATTATTGAGTACTCTTAGTCCAGTAGTGTACTCTTAAGAAATGATGGCATTCTCACaattaaaaaatgagttttacataaaaacttattttttgtaGAGGGATCTGATCAGaaatctctataaaaaaaaaaaaaaaactaaactaaataaaacaaaacaaacaaaaacaaaacaaagcatgCAGCCTTACCTGATAATGCACTTTTTTCTCTAATCTTTTGGGGATTTGCTATGACAACTATGAGAATTTAAATCAActctttttgtttaaatgttaaactaGAAACCAGATAGCAGATTTTAACTAGGTTGTCCAGTACTGGGTTTTGTTGTAACCTATAGTGAGTTATTGAAGATGCAATGCTTAATCACCTTTCCTACTGTGTGAAttttaaactctgaaataaTGATTAAACTTCATTAAACATCTGTAAA
>XM_022679595.1
ATTTCTCGAAATCGAGAATAAACAGACCAGCTGAGAGTCAGGAAGTTTAAATACCAGCAGACAGCAGAAGCTTCATTTAACCAGCTCGGGTTTAACATGGCGAAGATCGTGTCTAACCGTATAATGCAGCTGCTGTGTGATAACATGGGCTGTCTGGAGCTGGGGCAGGTGGACAGCGTGCTGAAGAAGAGCTACACGGTGGATGAAGGTCTGCTGAAGAGGCTGCTGTCTGACCGCAGCAGTTTTGAGATGGTGGAGCAGAGCACCGGGCCGCTGCTGGTGTCCAGGACTGACCTGCGAGTCTGCTGCAAACAGGGCGACGACTGCCAGGACTGCGGCCAGCTGCACATCTGCAGGTATCTGGTGTGTGGAAAGTGCAAATTTGGGTTTAAGTGCAAGAATTCACATGACATAAAATCTCAGCATAATTCTGCACTCCTGGCATTAAAAAATCTCAGTAACCTTGAAGAAGCTCAGCTGTTCCAACTGTTGCTGCAGAATGACCCAACTCTTCTTCCAGAGCACTTCCTGCAGGATGACTGTAAATTTGGAGCTGCTTGTAAACGGGCTCATTCCTTTGATGCCGCCGCCATGAAAATCCTGAATGCCAGAGGACTCAGCCCCGAAAACCTTCGCAACCTTCACAAAATATACAAGAACAGATTTCTCCTGGCTGGGAATGATGAGAAACATGCAGCCAAACCAGTGGAGAAAGGCAAACAGACGAGCAGGCAGCACTCCAGTAACTCTGTGAGTGAGGCCGACCGCAGTGAAATCTGTCTGTACTTTGTTCGTCAGGGATGCAGTTTTAAAGGGAAATGTGTCCGTGTTCATCATGATCGACCTTATAAATGGGAGGTTTTAGCCCAGGACGGAGTGACATGGACACACATGCCTAATGAAGAGGATATTGAGCGAGCCTACTGTAACCCAGCTAATGAGAAGAGCTCTGGACCTCAGCCAGTGAACTTTTCCTCAATGACGTGTGGAGGAGCTTCAGTACGTCGACTTTCTACAGCATCGTCCGTTACCAAACCTCCTCACTTCATCCTGACCACTGAGTGGCTATGGTACTGGGAGGATGAAAAAGGACAATGGAATGAATATGGTCATGGGGACGATGGAAAAAATGTGTCCTCAGTGTCCTCGAAAGTGTTGGAGAATTTGTTTCTCGCTGAAGTTGAAACTGAACTCACCTTCAGCGTGGGTAATCAAAACTATGTGCTCAACCTGAAAGATATGTGTCAGCAAAACATAAAGTACAAGACAAAAAGAAAGGTTCGAAGGAGGCCGCAATTCGTTTCAGCTCAAGACGTGAAGGGCAAATTGAAAAGTGACACCCAGGaaagctccagctcctcctctgtGGAAGTTCCTGCACACTGGGACAAAGGGACCCCAACTGATCACTCCTACAAGattgttcCTCTGTTAAAGTCTGCGACTGATTACAAAACAGTAGAAATGCTGTTTAAGCGGACAATGTACACAAGCACCATCCACAGCATCAGGAGAGTGCAGAATCCATCTCTCTGGAGAGTCTTTCAGTGGCAGAAAGAGCAGATGAAGGAGAGGAATGGCGGGAAGGATGTGGATGAACGTTACCTGTTCCATGGTACAGATCAGCATTTAATAGATGCCATCTGTGATCAGAACTTCGACTGGAGGGTCTGTGGTGTTCATGGGACACTTTATGGGAAAGGAAGCTATTTTGCCAGAGATGCCAAGTATTCAGATAAATACGCTAAATCCAGTGGCAGGACCAAGATGATGTTTGTGGCTCTCGTCCTTGTTGGCGAATTAACCAGAGGCAAAACAACCTACCTACGACCCCCACAGAAGAATGGCGGGCGGGGCTTTTACGATAGCTGTGTGGACAACGAATCCAACCCAGCTATTTTTGTCATCTTTGAGAAGTATCAGATCTATCCTGAGTACATTATTGAGTACTCTTAGTCCAGTAGTGTACTCTTAAGAAATGATGGCATTCTCACaattaaaaaatgagttttacataaaaacttattttttgtaGAGGGATCTGATCAGaaatctctataaaaaaaaaaaaaaaactaaactaaataaaacaaaacaaacaaaaacaaaacaaagcatgCAGCCTTACCTGATAATGCACTTTTTTCTCTAATCTTTTGGGGATTTGCTATGACAACTATGAGAATTTAAATCAActctttttgtttaaatgttaaactaGAAACCAGATAGCAGATTTTAACTAGGTTGTCCAGTACTGGGTTTTGTTGTAACCTATAGTGAGTTATTGAAGATGCAATGCTTAATCACCTTTCCTACTGTGTGAAttttaaactctgaaataaTGATTAAACTTCATTAAACATCTGTAAA

Function

GO: NA

KEGG:

id description
K15259 PARP7S; poly [ADP-ribose] polymerase 7/11/12/13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679594.1 True 2457 mRNA 0.44 12 10917452 10924422
XM_022679595.1 False 2373 mRNA 0.44 12 10917452 10924422

Neighbor

gene id symbol gene type direction distance location
LOC103045650 NA coding upstream 4485 10902953 ~ 10912967 (+)
srgap1 srgap1,srgap1a,LOC107670373,LOC108264626,LOC107684655 coding upstream 15893 10766015 ~ 10901559 (+)
tmem5 tmem5,LOC107722461,LOC107738400,LOC107587049,LOC107559810 coding upstream 153342 10758240 ~ 10764110 (+)
cmip cmip,LOC107684659,LOC106573687,LOC106560887 coding upstream 288973 10595402 ~ 10628479 (+)
LOC103035018 grm3,LOC108444204,LOC108263977,LOC107671160,LOC107665551,LOC107559415 coding upstream 387960 10465789 ~ 10529492 (+)
LOC103046273 NA coding downstream 221740 11146162 ~ 11206745 (+)
fam107b fam107b,LOC107722469,LOC107738407,LOC102787157 coding downstream 307539 11231961 ~ 11266320 (+)
nup205 nup205,LOC107684652 coding downstream 344593 11269015 ~ 11293673 (+)
LOC103046882 zgc:110789,LOC108413851,LOC107673135,LOC107738439,LOC107722464,LOC107670368,LOC108264853,LOC107587050 coding downstream 526500 11450922 ~ 11461645 (+)
LOC103032257 tspan9a,LOC108414266,LOC105018129,LOC107672591,LOC107738414,LOC107587031,LOC107559293,LOC106573177 coding downstream 1106714 12031136 ~ 12333915 (+)
G157546 NA non-coding upstream 34984 10881730 ~ 10882468 (+)
G157540 LOC103039511,LOC100702099,LOC100707594,LOC105905159,LOC108412826,LOC105889141,LOC102291458 non-coding upstream 160790 10755079 ~ 10756662 (+)
G157523 NA non-coding upstream 217080 10700157 ~ 10700372 (+)
G157513 NA non-coding upstream 257025 10659793 ~ 10660427 (+)
G157483 NA non-coding upstream 382474 10506917 ~ 10534978 (+)
G157557 NA non-coding downstream 93993 11018415 ~ 11018813 (+)
G157703 NA non-coding downstream 385593 11310015 ~ 11314603 (+)
G157761 NA non-coding downstream 543504 11467926 ~ 11468139 (+)
G157764 NA non-coding downstream 563638 11488060 ~ 11489560 (+)
G157766 NA non-coding downstream 567817 11492239 ~ 11492486 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other upstream 162754 10751699 ~ 10754698 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other upstream 203470 10700788 ~ 10713982 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other upstream 325929 10572743 ~ 10591523 (+)
G157383 NA other upstream 975647 9940829 ~ 9941805 (+)
G157055 NA other upstream 2346575 8569930 ~ 8570877 (+)
hipk2 hipk2,LOC107722467 other downstream 106643 11031065 ~ 11143471 (+)
LOC103031933 ttc38,LOC103031933,LOC108414465,LOC104940279,LOC106573176,LOC100694777,LOC107722483,LOC107673144 other downstream 1415584 12340006 ~ 12366770 (+)
hsbp1 hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299 other downstream 1811097 12735519 ~ 12741002 (+)
LOC107197649 LOC108416831 other downstream 2809523 13733945 ~ 13742500 (+)
LOC103042073 LOC103042073,LOC108418727 other downstream 3049399 13973821 ~ 13980025 (+)

Expression


Co-expression Network