nup205 (nup205,LOC107684652)


Basic Information

Item Value
gene id nup205
gene name nup205,LOC107684652
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 11269015 ~ 11293673 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679602.1
ATCCGAAACCGTATATAATTTTCAGTCTGGCGATAAGCCGGGAGGCTGCGGCTgggctggtggtggtggagcaGACATGGCTGCGCAGATGGCGGTAAATTCAGGAGCCAGTCTGTGGGGTCCACTGAAAGAGTTATGGGAGACTGTGGAGGGCTCAATATGGAGGAAACAACCAGAAAGTGTTCATCTTCTGGATTTGCAgttgaaaaaaaacaagcccTACTTTCTGTCTTTGTTCAAAAACCCGCCAAAAAGtgcagagcagagagagaaagtgaggaaaGCCAGCACAGAGGGAATTTCTATTCAGGGCCAGCAGGGCTCACGACTTCTCCCTGAGCAGCTGCTTACAGAGGCGTTTATCCTCAGTGATCTCTTCGACATTGGAGAGCTTGCAGCACTTGAACTGTTGCTTGCAGGAGAGCATCAGCAGCCTCATTTTCCCGGTTTGACAAGGGGTTTGGTGGCTGTTCTGCTGTACTGGGATGGCAAGCGCTGTGTGGCCAACTCTCTGCGCTCTCTCATCCAGTCACGTCATGGCAAAACTTTCACTCTCGACCTTGGTGCGGATTTGGTTAGTCTCACCACACGCTTTACAGATGAGCTGATGGCTCAGGGATTGGCCAAACAAATCCTGAACCTTGTGTCAGATATTAATGTCACACGGGAGTTTGAGAGGCTGCAGAAGGAGCGAGGACTTGGCAACGAGAAACATAGGAAAGAGGTGTCTGACCTCATCAAAGAGTGCAGACAGTCGCTAGCTGAGTGTCTGTTTTCATGGACGTGTCAGTCACCCCTTAACAAAGATGATATGCTTGCCCTGATTGGTCATCTGGAAACAGTCACAGCAGAAGCTGATGGCTCACTAGATAGTGTGAACCTTGCACTGGTCATGGCATTGCTGTACTGCCTGGATGTCagttttctggagcaagggacAGAAGACCGAGACGACCTTCTCCAAGCCCTGCCCTTACTGACAGAGAAGCAGTATGTGTCAGCAGTGCACAGTCGTCTGGTAGAGGGTCCGACATGGAAGCTTCCTGGCCTACAGGCAGTGGTGCGGCTGACGTGGGCACTGTCGCTCAGGGCCCTCTCTCAGCTTCCCCAGGGTGCAGGTTTGGTAGAGTTTACAGAGGCAGACGAAGCTCTGGCTGACCAGGCCTTGCTGGGTGGAGTGTTCCTTTTCCTGACTGAGGGTATTCTGGGAAGTGAAGGCTTTCACCAGGAGGAGTTCTACACTCGGCGCCTTCATGCCCTCATCACTGATTTCCTGGCTCTTATGCCCATGAAGGTAAAGCAGTTACATAACCGAGCTGATGAAGATGCTCGACTAATTCACATGGCACTGCAGATGGGCAGTGAGCCTCCATCTCTCCGGAAAGACCTGGAGCACCTCATGATACTGATTGGTGAGTTCTACAGTAAAGACCCATTTGGACTGGAGCTAGCCCTGGAGTTCTGGTGTCCGTCAGAGTCCATGCAGCATACTTCACTTGCTGGATCCTTTTTGGGAGTTGCTCTTCAAAGACCTCCTCACAAACAGGTGGTTCTCTCCAAGTTCGTACGTCAGATGGGGGACCTGCTGCCTGCCAATCTGTATATCCCCTATTTGCGCATGCTGAAGGGGCTGGCCAATGGGCCACAGTGCTCACACTATTGCTTCAGTCTGCTCAAGACCAATGGAGCTCCGCAtgGCGAGAATCTGCAGGGTGGTGTATCAGGAAGCCCAGTGTCATGGGAGCACCTGTTCCATTCTCTTATGCTGTACCATGAAAACCTACGGCGGGATGTCCCGAGCACAGATTCCACTCAGTACCGCCATCCACCCATCAGAGGAATCACACAGAGAGAGCTGGATGGTCTAACTGCTTTCCTTCAACTGCTCACCACCATCATCAACTGGAGTGAGAATGCACGGCTGGCTCTGTGTGAGCACCCTCAGTGGACTCCTGTGGTGGTGATGCTGGGCTTACTACAGTGCAGTGTGCAGCCAGTGCTGAAAGCCCAGCTCCTCCATGCCCTTGCTGCTTTTGGAAAGTCCCCTGAGATTGCTGCGTCTCTCTGGCAGTCTTTGGAGTATACACAGATCCTGCAGACAGTGAAAACTCCTGGACAGAGACAAGCAGCAGGAATAGAGGTGGAGCTAAATGAGATTGAGTCCAGCTGTGAGGAGTACCCCTTGACTCGGGCGTTCTGTCAGCTGATTAGCACTCTTGTGGAGAGTTCACTTCCAGTTAATCTCGGAGCTGGACTACGTGCGCCGGGATTTCAGCCTTATTTGACCTTTTTGCGAGATGCTGTATTTCTGCCCTTTCCAACTCGAGCCTACCGTCGACCAGCAGAGAAGTGGGAGGTAGCAGAGGCAGTCCTGGAGGTGTTCCACAAGCTGCTGAGGGATTATGAGCCTCAGCCAGCAGACTTCCTGCAGGAGACTGTTGAGCTGCAGGGGGAGCAGGTACCGGCTCATAAGCCCCCGGGCCACAGCCTGATGTTTCATCTTCTGAATGACTCCCCCACTCTGTCTCTGTGCCTCAGTCTGCTGGAGGAGGGTGTCCGCCAACTAGACACTTATGCTCCCTTCCCTGGTAAGAAGCAGTTGGAGTCAGCAGTGCTGCACTGTCTGAGTCTGCTGGACCTGGCCCTACAGAAGGAAGTGGTGTTCATGGACTTGCTGAGGGAAAGCCAGGCTTCCATGCTGGTCTCTCCACTGGAGCAGCTACTGCAGGGTGTCAGTGCCCAGAGCAGACGAGCCGACCACATAATCAACATCGCCAGGTATTTGTATCACAGTAGTTCCAACCCTGAGGCTGCGTTCCTGAGCGCTAAGATCCTGCGGCATATTGCACGTTATCCCAACATTCAGTCTAGATTGGTTGGAGACTTTACCCATGATCAGACAGTGAGTGATAAGCTGATGGCTGGTTTTGTTGAGTGCCTGGATAACGATGAGGCCCAAGAGGGTGTGGACAAAACAGATGACTCAGATCCAGATAAACGCATTGCCAGAATTCGACATGAGACGCAGATCCACATTCTTAACCTGTTAATTACCTCATTGGAGCTCAAGGGTCCTAACCTGGCCCTCTACCTGCTTGGGTATGAGGTCAAGAAACCAGTCTCCTCCACCAACCTACAGGATCCAGGAGTTCTTGGTTGTCCGCGGAGTTGCCTGCATGCGATTCTAAGTTTGCTCCAGCAAGGCAGCGAGAGACGTTCTGGACCAATCCTTACACAACAAGCCCCACACCTGGCTGAACTCTGCTATCAGGTGATCTACCAGCTGTGTGCATGCTCCGACACCTCTGGACCCACCATGCGTTACCTGAGGACTAGTCAGGACTTCTTATTCTCTCACTTGAAGCACTTACCCTTCATCCTGCCTGGCAATGAAATCCCTTCCCTGAACCAGATGTCCTGGCTAATGAAGACTGCAGCCATCGAGCTCAGAGTTACCTCGTTGAACCGCCAGCGTTCACACACTCAGAGACTGCTCAACCTTCTGCTGGATGATCAGCCACACATGCAGCATGCAGATGCGGAGTTGGGCATGGATGATGATAGTAAAACAGTCAGCAGTTTCTTGCACTTTGACACAGTTTCTAAAGTGCGCAGAAAGCTTCTGAGTGTTCTGGATGCTATAGACTTCAGTCAGGAGGTGCCTGAGCAGCTGCAGCTGGATTTCTTTGAGCGTACTCAGATCGAGCAGGTCATTTCTAACTGTGAACACGTCAATGAGCAAGGGCACACCGTCTGCAATGTCAAGTTGCTCCACAGGGTCTTGGTTGCAGAGGTTAACGCACTGCAGGGGATGGCTGCAATCGGGCAAAGACCGCTGCTGATGGAGGAGGTGAACTCCATCCTGCAGCAGGTGGTGGAGAGGAACCGGGTGCGGCGCAGTCTCAGTGCTAAGCGTCATGCCCTGCAGAGCTGGAGGAGTCTGGTGGAGACGATTCTCACAGCCTGTCCTGCTGAACTCATCCCTGCTGATCAGAGACAGCTCATCATCCGAGACCTGCTGCTTGACCTGCATGACAAAGTTTTATCAGAGGACGCTGCTGTTGAGTTGATGCCAATCGTTGCTGGAGCAGTGTTCACCTTGACTGCACACCTCAGCCAGTCTGTGCTgtcagagcagcagcagggagCTGGACTGGAGGGTGGCTCTTCATCAGGCTTCGCCTCTATTGCCAACTCTGCTCTTCACCTCATTCTGAGAAAGCTGCTGGACTTTATCCTGTGCACAGGTGGTGGGTTTCAGCGTCTGCGTGCCCACCTGTACGGCTCCCTGCTCTATTACTTGCAGATCGCCCAGAAACCTGAGGAGCCAGACACGCTTCAGACAGCAATGTCCATGTGGGAGCGACTAACTGCTCCTGAAGATGGCTTTTCTAAGCTGCAGAGAGAAAACCTGGCCATCATCGAGAGCTACGGCACTGCTCTGATGGAGGTTGTGTGCAGGGATGCCTGTGATGGGCACGAGATAGGCAGGATGTTGGCTCTGGCCGTGCTGGACAGGGTATTGTCTATAGACAGGCAGAGCCAGTGGCTAGTCTATCTGTGTAACAGTGGCTACCTGCGTGTGCTTGTGGAAAGCCTGCGGCAGGATGACGCAGCACTGCAGACCCTCCTGATGCCCCAGCCTCCACTGCTCAAACCATTATACATCTATGAGTCCAAGATGGCTTTGCTGACTCGTGTGGCTAAGACGGCACAGGGAGCTGTAGAGTTACTCTGCTGTGGGCTGGTGGCTCAGCTCGTCGAGTGCCGGGTGTTCCACATGCTGCCCGAGAATGACTCCCTCAGAGTGTATGGTCAGAGGGATCCATCAGGGTTTATCCCAAGCCCCCTGGAGCGATACAGACAGATCCTCCTCCCTACACTCAGACTCCTGCAGGTTATCCTGacctccaccaccacacaccaccaGCAGGGGGCAGCACAGGTTCTCCAGTGGCTGATTGTGCACTCGGACACTATTCAGTCTATCTTGCGCAGTCAGGATGTGAGTATGGGATCACTACAGGAACTCTCCCTCCTCACAGCCATCATTAGCAAGACTGCACTACCAGGAGCTTTGGATTTGGGACAAGAAATCAACAGTGCAGCCCTGCTGGAGTTCCAAGGACACATTGGAAGATTCCAGCGCCAAAGCCTGTCTCTGCTCGTACGCCTGGCAGGCACTGAGCGTGCTCGCTACTTAAAGCAAATAGAGGAAAGTGGTGCTCCTGGTGATAcagcagaaaaaagagaggagatGGAGGTTGCCATACAACAGGTGTGTGCTAACATAATGGAGTACTGTCAGACGCTGCTCCTGCAAAGCTCAGCTGAAGCCCAGTTCACTGTCTGCCTCTTCAGCCCTTCTGCTAGTGAGCCAACAGACATGGCAGTACCATCAGTGTCACGGGTACCAAGTCTGGGGCTTGTCCTGCTTCTGCTGAAGAACAGTGCCACAGACTTCTTTCGATACCATGACAGCCACCGACAGAGCCTGGGCAAACtgcagaggctggagcagcttgcCCCAGAAGAGCTTAAAGAGcTCTGCCAGGGCCTGGTGTCTGGTTCCGGTGGAGTGGAGAAGATCCCATCAGTGCAGAGGAGTGTGCTGGCCAAACGCCGTCTTGTCCAGCTCGTAAACAATCGTGCCAAGCTGTTGGCTCTCTGCTCCTACATCATTGAGACCTGCCTCTTTGTGATCTGGCGCCACCTGGAGTATTACCTCCTCTACTGCACACCTATTGATCCCAAGGACTCCCTGCTGCCAGGGTACAGAGATGCTAGCGGGGGTGGAGGTTTGGGGCTGTCCAGGGTCAGCCAACAGGATCTGGAACAGTTGCAGAGTGATGTTGCAAGGAGCTTCACAGAGCCCTTACAGAGGAAGCTGCTGGAGGTGGAGGGACTCTACAGCAAAACTCACTCTCGCCACACCTTCATCCAGGCCCTGACACGGAGGATCCGTGGCCTGGTGCGCCACACCAAGAGCTAGACACCTGTGAACAGATTTACTGCTACACACACCACTTACAGTCACCAATCTTCTGCTATGGTGAAAGCAATTTAGTACATCACGTTTCTAACTTTTCCTTTCTGCAGCCGATGCATCCATGAATTGTTTCATGTTAAGATTTTCTGATGTCTTTggatattgattttttttttctaattaataAAAGGACTAAATATTCTAA

Function

symbol description
nup205 Predicted to be a structural constituent of nuclear pore. Predicted to be involved in nuclear pore organization. Predicted to be located in nucleus. Predicted to be part of nuclear pore inner ring. Human ortholog(s) of this gene implicated in nephrotic syndrome type 13. Orthologous to human NUP205 (nucleoporin 205).

NR:

description
nuclear pore complex protein Nup205

GO:

id name namespace
GO:0005643 nuclear pore cellular_component

KEGG:

id description
K14310 NUP205, NUP192; nuclear pore complex protein Nup205

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679602.1 True 6194 mRNA 0.53 42 11269015 11293673

Neighbor

gene id symbol gene type direction distance location
fam107b fam107b,LOC107722469,LOC107738407,LOC102787157 coding upstream 2695 11231961 ~ 11266320 (+)
LOC103046273 NA coding upstream 62270 11146162 ~ 11206745 (+)
LOC103040136 NA coding upstream 344593 10917452 ~ 10924422 (+)
LOC103045650 NA coding upstream 356048 10902953 ~ 10912967 (+)
srgap1 srgap1,srgap1a,LOC107670373,LOC108264626,LOC107684655 coding upstream 367456 10766015 ~ 10901559 (+)
LOC103046882 zgc:110789,LOC108413851,LOC107673135,LOC107738439,LOC107722464,LOC107670368,LOC108264853,LOC107587050 coding downstream 157249 11450922 ~ 11461645 (+)
LOC103032257 tspan9a,LOC108414266,LOC105018129,LOC107672591,LOC107738414,LOC107587031,LOC107559293,LOC106573177 coding downstream 737463 12031136 ~ 12333915 (+)
utp4 utp4 coding downstream 1221789 12515462 ~ 12524112 (+)
mlycd mlycd,LOC107583902,LOC107722462 coding downstream 1490126 12783799 ~ 12800375 (+)
vps9d1 vps9d1 coding downstream 2325015 13618688 ~ 13647775 (+)
G157557 NA non-coding upstream 250202 11018415 ~ 11018813 (+)
G157546 NA non-coding upstream 386547 10881730 ~ 10882468 (+)
G157540 LOC103039511,LOC100702099,LOC100707594,LOC105905159,LOC108412826,LOC105889141,LOC102291458 non-coding upstream 512353 10755079 ~ 10756662 (+)
G157523 NA non-coding upstream 568643 10700157 ~ 10700372 (+)
G157513 NA non-coding upstream 608588 10659793 ~ 10660427 (+)
G157703 NA non-coding downstream 16342 11310015 ~ 11314603 (+)
G157761 NA non-coding downstream 174253 11467926 ~ 11468139 (+)
G157764 NA non-coding downstream 194387 11488060 ~ 11489560 (+)
G157766 NA non-coding downstream 198566 11492239 ~ 11492486 (+)
LOC111194766 NA non-coding downstream 199942 11493615 ~ 11501536 (+)
hipk2 hipk2,LOC107722467 other upstream 125544 11031065 ~ 11143471 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other upstream 514317 10751699 ~ 10754698 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other upstream 555033 10700788 ~ 10713982 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other upstream 677492 10572743 ~ 10591523 (+)
G157383 NA other upstream 1327210 9940829 ~ 9941805 (+)
LOC103031933 ttc38,LOC103031933,LOC108414465,LOC104940279,LOC106573176,LOC100694777,LOC107722483,LOC107673144 other downstream 1046333 12340006 ~ 12366770 (+)
hsbp1 hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299 other downstream 1441846 12735519 ~ 12741002 (+)
LOC107197649 LOC108416831 other downstream 2440272 13733945 ~ 13742500 (+)
LOC103042073 LOC103042073,LOC108418727 other downstream 2680148 13973821 ~ 13980025 (+)
G158369 NA other downstream 3756549 15050222 ~ 15050718 (+)

Expression


Co-expression Network