LOC103046882 (zgc:110789,LOC108413851,LOC107673135,LOC107738439,LOC107722464,LOC107670368,LOC108264853,LOC107587050)


Basic Information

Item Value
gene id LOC103046882
gene name zgc:110789,LOC108413851,LOC107673135,LOC107738439,LOC107722464,LOC107670368,LOC108264853,LOC107587050
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 11450922 ~ 11461645 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679613.1
AGGCTTAAGTCAGCTGCTCTTTAGCTCTGCTGAATTGAGTTCACATGATCAGCTGATAGGTCCCATTGCATTTACAATCaacttcagcagcagcagcagcagccttcatcgcctctctctctctctctctctctctctctctctctccctctgtaacGTATCTCCTCAAAGGTCCCCTGTCTTCCTTCACACTGCTTCTGCTGTACTTCCTTGGTCTCTTTTCATCCTGTCTTACAAGGTCTATCTGTGAAACTGTGCAGTGTTCTGTGTTCTTCACTTTAAGGACCTACAGAACTACTCATGACTTCAGAAAAGGAGAGCAATGGGATGGACAACTATTCGTTTCCTGTTGACGGTGTGGTAAATCGTTTCTGTGCGCTGCCTGAGGAACAGGATGCAGATTCAACAGAAGAAGACAGCAGGAATAAACTGGCTTATTGTGTAACAGATGTACCACCATGGTACCTGTGCATTATCCTGGGCATTCAGcACTTCCTGACTGCGTTTGGTGGAATCATTGCCATCCCGCTGATCCTGTCTCAAGGACTGTGTCTACAGCATGATGGACTCACTCAGAGTCACCTGATCAGCACCATCTTCTTTGTTTCAGGGTTGTGCACCTTGTTGCAGGTCACTCTGGGTGTCAGGTTGCCTATTCTTCAAGGTGGAACATTTACTCTTCTTGCACCATCAATGGCCTTGCTTTCCATGCCAGAATGGACCTGTCCAGCATGGACACAGAATGCCACCCTGGTCAACACATCTTCCCCTGAGTTCATCCATGTCTGGCAGAGTCGCATGCAGGTGCTTCAGGGTTCCATCATGGTGGGCTCCCTGTTCCAGGTACTGGTGGGATTCTCTGGCCTCATTGGTCTCTTCATGCATTTTATCGGCCCTCTGACCATCGCACCAACCATCTCCCTTATTGGCCTGTCTCTGTTCGACTCTGCTGGAATGAATGCAGGAAACCACTGGGGAATTTCAGCCATGACGACATGCCTGATTGTACTGTTCTCACAGTATCTCCGTCACATTGCAATACCTGTACCCACATACAGCAAGGCCAAGAAATTCCACACATCCAGGATGTATATCTTCCAGATCCTTCCTGTGCTCCTGGGAATTACGGTCTCCTGGCTCATCTGCTATCTTTTCACTATTTATGATGTCCTACCCTCTGACTCTGACCAATATGGCTACCTAGCTCGCACTGACATTAAAGGGGATGTGATTGGAGGTGCACCCTGGTTTAGGTTTCCATATCCAGGGCAGTGGGGCATGCCTACTGTGAGCTTGGCAGGTGTGCTGGGTATCCTGGCCGGGATCATATCCTCAATGATAGAGTCAGTGGGTGATTACCATGCCTGTGCTAGGTTATCTGGTGCTCCACCTCCACCCAAGCATGCCATCAACAGGGGGATTGGCATTGAGGGCATAGGCTGTCTTCTGGCAGGGGCCTGGGGAACGGGCAACGGGACCACCTCCTACAGTGAGAATGTAGGGGCGCTAGGAATAACTAAGGTTGGCAGCCGAATGGTGATTGTTGGCAGTGGCGTCATCATGATCATTATGGGAGTGTTTGGAAAAATTGGAGCAATTTTTACCACCATCCCAACACCTGTTATTGGTGGAATGTTCCTAGTGATGTTTGGGGTCATATCTGCAGCTGGAGTCTCCAATCTACAGTATGCAGATATGAACTCATCTCGTAACATCTTCATCTTCGGCTTCTCGATGTTTACTGGACTTGCCATCCCAAACTGGATAATGAAAAACCCAGCTGTCATTGCAACAGGTATTGTTGAGCTGGATCAGGTTCTTCAGGTTCTTCTGACAACCAGCATGTTTGTGGGAGGGTTCTTTGGATTCATGCTTGATAACACCATCCCCGGGACAAAACGTGAGCGAGGCATAACTGCGTGGAACAGAGCCCACGAAGATGATTCTGACAGCACACAGGAGAGTGATGAGGTTTATGGGCTTCCCTGTGGCATCACCTCATATCTCTCCTCCTGTTTTTGGATCAAATATGTGCCTTTCTGCCCATCACATAAAACCAGGCCACAAAATATCACCGCCAGCAGCTCGAGCTCACTGGAGAAGAAGGAGCCTAGCAAAAATGACACACACATCATAGTAGCAGTGGCACTATAATCATACAGGAGGACAACATCTGTTGTGGTCAATGCAGTTTGGGCTGGAACCCTCCACTTCACATAATACCTACTGTAATCTACCCGTGCTGTGAAgactgagaaaaaacaaaacaaaactaaactaaatgctCTGAACTCTCTAAAGACCAGAGGCAGCTGTATGGGGGTTCCACGTGTCTTTTATGGACCCATTGTTTTCTGATATTTCTTTTATAACAAAATATGGTATGAATGTGAATTGAAGATATGAATGTGTAGttgaagtatgtgtgtgtatgtatgtaagtataTATTCCTTTTTATTTCCTACATGTTTTGCATTTGTGGCActtaaataaaggaaaacatgTCTATGTA

Function

symbol description
zgc:110789 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in pigment cell; retina; and retinal pigmented epithelium.

NR:

description
PREDICTED: solute carrier family 23 member 1-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679613.1 True 2513 mRNA 0.47 12 11450922 11461645

Neighbor

gene id symbol gene type direction distance location
nup205 nup205,LOC107684652 coding upstream 157249 11269015 ~ 11293673 (+)
fam107b fam107b,LOC107722469,LOC107738407,LOC102787157 coding upstream 184602 11231961 ~ 11266320 (+)
LOC103046273 NA coding upstream 244177 11146162 ~ 11206745 (+)
LOC103040136 NA coding upstream 526500 10917452 ~ 10924422 (+)
LOC103045650 NA coding upstream 537955 10902953 ~ 10912967 (+)
LOC103032257 tspan9a,LOC108414266,LOC105018129,LOC107672591,LOC107738414,LOC107587031,LOC107559293,LOC106573177 coding downstream 569491 12031136 ~ 12333915 (+)
utp4 utp4 coding downstream 1053817 12515462 ~ 12524112 (+)
mlycd mlycd,LOC107583902,LOC107722462 coding downstream 1322154 12783799 ~ 12800375 (+)
vps9d1 vps9d1 coding downstream 2157043 13618688 ~ 13647775 (+)
spata2l NA coding downstream 2198285 13659930 ~ 13664333 (+)
G157703 NA non-coding upstream 136319 11310015 ~ 11314603 (+)
G157557 NA non-coding upstream 432109 11018415 ~ 11018813 (+)
G157546 NA non-coding upstream 568454 10881730 ~ 10882468 (+)
G157540 LOC103039511,LOC100702099,LOC100707594,LOC105905159,LOC108412826,LOC105889141,LOC102291458 non-coding upstream 694260 10755079 ~ 10756662 (+)
G157523 NA non-coding upstream 750550 10700157 ~ 10700372 (+)
G157761 NA non-coding downstream 6281 11467926 ~ 11468139 (+)
G157764 NA non-coding downstream 26415 11488060 ~ 11489560 (+)
G157766 NA non-coding downstream 30594 11492239 ~ 11492486 (+)
LOC111194766 NA non-coding downstream 31970 11493615 ~ 11501536 (+)
G157771 NA non-coding downstream 49798 11511443 ~ 11512521 (+)
hipk2 hipk2,LOC107722467 other upstream 307451 11031065 ~ 11143471 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other upstream 696224 10751699 ~ 10754698 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other upstream 736940 10700788 ~ 10713982 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other upstream 859399 10572743 ~ 10591523 (+)
G157383 NA other upstream 1509117 9940829 ~ 9941805 (+)
LOC103031933 ttc38,LOC103031933,LOC108414465,LOC104940279,LOC106573176,LOC100694777,LOC107722483,LOC107673144 other downstream 878361 12340006 ~ 12366770 (+)
hsbp1 hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299 other downstream 1273874 12735519 ~ 12741002 (+)
LOC107197649 LOC108416831 other downstream 2272300 13733945 ~ 13742500 (+)
LOC103042073 LOC103042073,LOC108418727 other downstream 2512176 13973821 ~ 13980025 (+)
G158369 NA other downstream 3588577 15050222 ~ 15050718 (+)

Expression


Co-expression Network