cry1 (cry1,cry1ab,LOC107672239,LOC108426403,LOC103023024)


Basic Information

Item Value
gene id cry1
gene name cry1,cry1ab,LOC107672239,LOC108426403,LOC103023024
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 13961055 ~ 13972324 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679638.1
GTCAGTGCGGGGCTGCATTAACGCTGACATTCACAAAAGGGCAAGTGAGAGCGACCAGGACAGAACACAGAGGAACACAGAGACGAAGCTCAGCTGGATCAACTGAACCGAAACACCCAGTTGGAACCCATTTCCAGGAATAGTATTTGTTAATGCTTATTAGGGCGTTTCCTTAATTTATCTCGCTAACTAGCTAAATAGTAACTAAGCTAACTATGCGTTACCCTAACTGGTAACTAGCTGAGCGACcgttatttctgtattttttttttaaacagaaggaGAGAAATAGCGTTAAGCTAGTCGTTTTTCACTCGAATAGCTTGGTAAATTGTGGACATCTGGCTTTGAACgagctttatttaatttttttatactaaCATTAACTAACTAAGCTAACCTACCTAAAATGATTTTAGGTTTGTCTACTCCTGCCTTAAGTTGTCCTGGATGATTCAGCACACAAACGCGCCGAGACCCGTTACCACCATCCACACCAACACCAACATGGGAAAAGTGTTTCTTGAGCAGGGTTGAATCAAGTcgtcttttttttactttctgactTTTTTAAACTGCTCACAGACTCTAAATCAAACTCGATTACCTCGGGTGAATTGTTGCTGATCTTACTATCAGCCCGCTTCTTGTACAAGGGGACGATATCTGGGAGTTATGGTGGTGAACACGATCCACTGGTTCAGGAAAGGCTTGCGGCTGCACGATAACCCCTCACTCCTGGACTCTATAGCGGGGGCGGACAGTCTGCGCTGCGTTTACATACTGGACCCTTGGTTTGCAGGCTCGTCCAACGTTGGGATCAATAGATGGAGGTTTTTACTGCAGTGTTTGGAGGACCTGGATGCCAGCCTTCGCAAACTCAACTCACGCCTGTTTGTCATTAGAGGCCAACCCACTGATGTCTTTCCAAGGCTTTTCAAGGACTGGAAGATCACCCGTCTGTCATACGAGTATGACTCTGAACCCTTTGGAAAAGAACGGGATGCAGCCATTAAGAAGCTGGCCAGTGAAGCAGGGGTGGAGGTCACTGTTAGAATCTCCCACACACTTTACGATCTGGATAAGATCATTGAGCTAAATGGAGGACAGTCCCCGCTCACCTACAAGCGATTCCAGGCACTGATCAGCACAATGGATGCTGTGGAAACTCCAGCAGAGACCATTACCGCTGAGATCATGGGCAGGTGTGCCACACCTATCAGCGATGACCATGACGAGAAGTTTGGTGTGCTATCATTGGAGGAGCTTGGCTTTGAGACGGAGGGTCTGTCTTCTGCCGTGTGGCCAGGGGGAGAGAGCGAGGCTCTGACTCGTCTGGAGAGACACTTGGAGAGGAAGGCATGGGTGGCTAACTTTGAGCGTCCCAGGATGAATGCCAACTCCTTGCTGGCTAGCCCTACAGGCCTGAGTCCTTACCTTCGCTTCGGATGCCTCTCCTGCAGACACTTTTACTAACTCACAGACCTCTACAGAAAGGTAAAGAAGAATAGTGTACCTCCACTGTCTCTCTATGGTCAGCTACTGTGGCGAGAGTTCTTCTACACAGCTGCCACCAACAACCCGTGCTTTGACAAGATGGAGGGCAACCCTATCTGTGTGCAGATTCCCTGGGATCGAAACCCAGAGGCACTCGCCAAGTGGGCAGAGGGCAGGACAGGTTTTCCCTGGATCGATGCCATCATGACCCAGCTGAGGCAAGAGGGCTGGATTCACCACCTGGCTCGACATGCCATCGCCTGCTTCCTCACCAGAGGAGACCTGTGGATCAGCTGGGAGGAGGGCATGAAGGTGTTCGAGGAGCTGTTGTTGGACGCAGACTGGAGTGTGAATGCAGGCAGCTGGATGTGGCTGTCCTGTAGTTCGTTTTTCCAGCAGTTCTTCCACTGTTACTGCCCAGTGGGTTTTGGTCGCCGCACTGACCCTAACGGAGACTACATACGTCGATATTTACCCATATTGAGGGGGTTTCCTGCCAAATACATTTATGATCCATGGAATGCACCCGAGGGGGTGCAGAAGCTTGCTAAGTGCATCATCGGGGTGCACTACCCCAAACCCATGGTCAACCATGCAGAGGCCAGCAGAATAAACATTGAGCGCATGAAACAGATCTACCAGCAGCTGACCTGCTACAGGGGTCTTGGGCTTCTGGCTTCTGTACCGTCCAACTCCAGTGGTAATGGTGATAATGGAGGAGCAGGCTCTGGTGACAGCACACAGGAGGGCAGTGCTGCAGTGCACTTAACCCCAGCTAACCCTCGAGAAGATTTCTCCGCAAACACACAAAGTGACCAACAACCTGCCCAGCAACAGATAGGCTTCTCAGGAGCTGGTAGAGCTGGATCTCACAGACAGGATTCAAAGCAGGCACGAGGGAGAGGAACAGGTACTGTGAAGCGGCACAGTGAGGACCCAGCATCAAGCAATGGGTGCAAGATTCAGAGACAGAGCTGTAACTAGCCACACTTACAGAGATGTCACCTTGACCCACCTCTCCTCAGGCTGGCAACAGGACACGTTCCTAAAGACTGAAATTCCCTAAAAGTACTCTTATATGTTCACGTCACGCCTTCACATCTTCCACCTCAAAGTTTTTCCTCTATGCTAGGCCATAGTGTTGTTCCACATGTAGTCCTTAAGTAAACTAATGCTTTGGTACATGTGACTAAATTAAACCCAGTTTATAAGCTGTGTACAGTGGCATACTGTGTATATTTACAGCACTGTAAGTATTTACAGTGTTTGATTCATGTTGAAATTGTCAAAGAAAATGTCTGTTTGTGTTTGCCAGGTTTATGTATCATGTTTTCATTCAGGCACTCCAATATTTCATGCATATTTGTCTCATTTTGCGTATGCAAATCTGCGTGTCTTGCATACTCTTATCGTTCGTGTTGCTGTAGCTGCCCCATTTCTGAGATTCCTGTTTTGCAATGAACGTAAAAATAGCACAATGAGGTAGagctcaattttgttttttttactgaaaaaagcAAACAGTGGTAACAAGCCAAGTCAGCTTTATTGAATTCATATCACATTTAAAtatgaagctacaatgaagctATAATGGcaacattaattaatgcaatTTGACCAATTTTATTTGTACACATTGAAACCGAACACTGATGcattgtgaaatattttatgCATTTGTTACAATTAGAAAATAACCAAGTGACTAAAGTGACCCCacttgttatttttatataaagcagAGATGACGTTTATCAAATAATTGAATGGCTTAAGAGTCCATTAAAGTATGTTTTTCTACAACTACAGGGACAATACAGCCTGCTATGTATATATGCATGTACTGCAAGTACTTCAGTCACCATACCTCTGTATATAATACCTTTTTTCTTGCTTAGTTACagacctactgtttttttttatatggaaaGCCATACCAGTTTGTTTTGAATTATTGGTATGTGCTCTTTTTAAAGCCTCCTTAAATCATAAACATTAGACCTGTTGATCA

Function

symbol description
cry1 Enables double-stranded DNA binding activity; nuclear receptor binding activity; and phosphatase binding activity. Involved in negative regulation of transcription by RNA polymerase II. Located in nucleus. Implicated in advanced sleep phase syndrome.

NR:

description
PREDICTED: cryptochrome-1

GO:

id name namespace
GO:0009649 entrainment of circadian clock biological_process
GO:0042542 response to hydrogen peroxide biological_process
GO:0009416 response to light stimulus biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003913 DNA photolyase activity molecular_function
GO:0005515 protein binding molecular_function

KEGG:

id description
K02295 CRY; cryptochrome

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679638.1 True 3511 mRNA 0.46 14 13961055 13972324

Neighbor

gene id symbol gene type direction distance location
uri1 uri1 coding upstream 285675 13666685 ~ 13675380 (+)
spata2l NA coding upstream 296722 13659930 ~ 13664333 (+)
vps9d1 vps9d1 coding upstream 313280 13618688 ~ 13647775 (+)
mlycd mlycd,LOC107583902,LOC107722462 coding upstream 1160680 12783799 ~ 12800375 (+)
utp4 utp4 coding upstream 1436943 12515462 ~ 12524112 (+)
LOC103042895 LOC108425440,LOC107740436,LOC107583921,LOC107672215,LOC107749314,LOC107553958 coding downstream 35691 14008015 ~ 14022424 (+)
LOC103043515 LOC108419231,LOC105022153 coding downstream 87479 14059803 ~ 14075538 (+)
LOC103047487 slc17a8,LOC107672209,LOC107583818,LOC107553956 coding downstream 258156 14230480 ~ 14247822 (+)
nr1h4 nr1h4,LOC106573302,LOC106561422,LOC107672305 coding downstream 280072 14252396 ~ 14277266 (+)
LOC103046676 LOC108430366 coding downstream 308575 14280899 ~ 14301400 (+)
G158023 NA non-coding upstream 111756 13848642 ~ 13849299 (+)
G157943 NA non-coding upstream 615591 13275460 ~ 13345464 (+)
G157933 cdh13,LOC107684661,LOC107722459 non-coding upstream 978584 12974488 ~ 12982471 (+)
G157926 NA non-coding upstream 1098399 12862389 ~ 12862656 (+)
G157920 zgc:173742,LOC108415671,LOC107684664,LOC107553995,LOC107749320,LOC108264272 non-coding upstream 1202966 12741848 ~ 12758089 (+)
G158045 mterf2 non-coding downstream 11622 13983946 ~ 13987158 (+)
G158038 ric8b non-coding downstream 116142 14088466 ~ 14092532 (+)
G158068 NA non-coding downstream 143995 14116319 ~ 14116843 (+)
G158085 NA non-coding downstream 177162 14149486 ~ 14150489 (+)
G158086 endouc,LOC108425714,LOC107749311,LOC107686338,LOC107672228 non-coding downstream 179094 14151418 ~ 14157033 (+)
LOC107197649 LOC108416831 other upstream 218555 13733945 ~ 13742500 (+)
hsbp1 hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299 other upstream 1220053 12735519 ~ 12741002 (+)
LOC103031933 ttc38,LOC103031933,LOC108414465,LOC104940279,LOC106573176,LOC100694777,LOC107722483,LOC107673144 other upstream 1594285 12340006 ~ 12366770 (+)
hipk2 hipk2,LOC107722467 other upstream 2817584 11031065 ~ 11143471 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other upstream 3206357 10751699 ~ 10754698 (+)
LOC103042073 LOC103042073,LOC108418727 other downstream 1497 13973821 ~ 13980025 (+)
G158369 NA other downstream 1077898 15050222 ~ 15050718 (+)
LOC111194769 NA other downstream 1156044 15128368 ~ 15137270 (+)
c18h11orf16 NA other downstream 1333888 15306212 ~ 15315552 (+)
LOC103041858 NA other downstream 1795731 15768055 ~ 15768661 (+)

Expression


Co-expression Network