lrriq1


Basic Information

Item Value
gene id lrriq1
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 14588458 ~ 14632192 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679646.1
CGATTTGTGGACCACAGGGACTGTAGCTACCATTACCTCTACTGTGAGCTGACTagaggtgggtaacccaggtccagagAGTAAAAATCCAGCCCAGGGTTTTatactgagctgcagcagagccacccaggcagttggtacaaaaccctgggTTGGATTTTTACTGGGTCTGGGTTACCCACCTCTAGAGCTGACTGATAAGTCGGtgattagacagacagacaatcaGACTGACACAGTGTGACacagacagatactttatttatcccagaGGGACATTCACACATCCACAGACTTTCTGAGTCTTTGAGACTCTGTGGCAGTTCTTCAGAGATGAGCGTGGTGAATGTTTGGATAAgaATGGATTCAGATGCAATAGATCGAGCTATTGAAGAGGAGCTGGAAAAGATGAGCCTGAATCTCTCTGACTCTGACTCAGACGATACTGAGCCTGAAGAGGATTTCACTGAGTGTAATGAAAAGCTGCAGATTGACTTTCCTGACCCAGTGTTCACCTATTTGGAAGCTTCACGTGGCAGAATGAAAACCTTGGAACATCTGATCCTTGAAGATTTTGATGAAAAGGATAGTTCATGTAATGAAACGTCTCATCAAATTGATTTTGAGAATCTTCTAAATGAACATGGCTGTATTCCTAAAGAGGATCTTATGAACCTGAAGGAAAGGATCCTTTCCGAGATTGAGGAGCATGTGACAGATCCAGGTGACTCTAATGGGTGTTCCTTGGAAAATATGAAGCCTACAGCGCATGTGAATAATGAAACAAAATGTGATGCATACAAGGAGACTGAAAAGCAGTTCATTTTTGAATGGAGAGCGATGGAAGAGAGGCTGAGGAAAGAGGAAGATCTGAGATTAGCAGAGCAGGAGGCTGAGAGGGAGCACCATCTGCACTCActgaaagaggaagaggagaagaagaagcacAGATTTGAGGAGTTTGAGGAGGTTCTGAGGACGATGAGCAGAATGGGCTCAtgtgaacaatgTGAAGAAGATGGAGATGATTACTTAGAACAACTTCAACTTGAAGAGGTCAAACAGaagGAACTGATCAAGCAATTAGAGGAGCAGCTAGAGGAGGAGAAGTGTGTATTTGAGAAGACACAGCAGGAggaaaggagaagaaaagagaagcgAAGTTGTGGGGCAGCAACCAAACTCCAGGCAGCTTTCAGAGGTGCTCTAGTGCGTCAATGGAGCAAAAAAGAGCTGtccaagagaagagaagaagcgAGGAGGAGACAGGagcaggaaaaagaaagagaactgaagagagagaaagaggaaaggaTTAAGAAGGACTTggaggagaagagaaggagagcagtggaggaggagatGCGTCAGAAGGAAGAACAGGAGAAGCGAAGAGTTGAGTATGAGAGAGCCAAGGAACAAGAGCGCCATCGTCTGAAGAGAGAGCGCAAGCTAGAGGAACAGAAAAGacgagaggaagaagaaaagaagatagaggaggaaagaaaactaaatgaagaggaagagaggaggaaAATAATAGATGAGCAGAGggaagaggaggaaaagagagctgatgagaaggagagggaaaaaaaggaggatgaggaaagaagaaaaaaaagtcatgaGGAGAAAATAGAAGAGGATAAAAGAAGGGCTGAAAAGAAAgcgaggaagagaaagaaacaagaggatagaaagaaaagaatggATGAGGAATGGaaagaagaggaaaagaggagAGTTGATGAGAAGGTATGGAGTAgaaaggaggaagagaagaagaaaaatacagaagaaaGCATGCAGGtgcagaaagaaaggaaaacaataaatgaagatGGCAGCAAAAGCAATGAGatggagatgaagatgaagatgaaagaTAAGATGAAAGATGAAAATAGAAAGGTGGAAGAGAGCACAGGGGAGGAAATTAGGAACGTGGACAAggaggaaagaaaagaagaggaggatATGAGAAGAAAAATCCATGAGCcagagaataagaataaaaaacaacttgAAATCAAGCTCTTACAGGAAGGAAAGCAAATAAAACTAGACAAAAAGAAGAGCAatgaaggagaggaggagacaAAGATTaaagaagaaggagagaaagcTGGAATGATAGTTTTAACCCATCCCATCAGTTCACCAGTCACCACTGCCCCCAGCCACACTAGCACTTTCCCAGCAGCAACTTATTTGGATGGAGCAAGGCTCCAGTATCAAATTGatgctaaaaaatataaaccAGACACTAAAGGACACCTTCGGGACCCTGCAGATTCAATGGAGAAGTGTCCCCAAGACTCAAGCTCCACATGCCTGCCTGAGAGAACAGAGCTAAAGCGGCTGGCCTGGATGATGAACTGTGTTCCCTGGTCAAAGCTCTCCATGCAGAATAAGAGGAAAAGGGTCACAGCCTCAACCAAGAAGAGGGAGGCTAGAAGAGCCTCAATGCCCAATCTTCCACCTTTACCTGTGGACACTATCCTCAGGTCTGGGTCCTGGAGCACTTTAAAACAGGTGACCACAGTAACTCTGGAAGACTTACCTGGCTGCAGTCTCTCACCCCTGACTGAGTGTGCCAGTCTGCAGTCTCTAACGCTCAGGAAATGTGGACTTAAAGCACTTGAAGCACTTAACCATTGCAGTGGACTTAAGCACATTGATGTACAGGAAAACAGTATCACGTATGTTAACCTTGGGAGTCTAGACCGACTGGAGGTCCTTCTGTTGGGTAAAAACCAGCTCACAAGCATCCACGGCCTGgatggtgctgttaacttgacTGTGCTTCAGCTCTCCTACAATATAATCTCCAGAATCAGTGGTTTGGGATCTCTGAAAAGGCTTCAGCGACTGTCAGTTGATCATAACCAGTTGATCAGCACGAGAGGCTTGAGTGATGTGTTCACACTGCTGCATCTAGATTGTTCATATAACCATCTGACCCATGTGGAAGGCCTAGAGCACTGTGCGCTCCTCAACACACTGGACCTGAGAGGAAACAGTCTGTCTGAGATACCTGTACTGAAAGACCATGTGTTGCTGAGGGAGCTGTATCTGGATGATAACAGCATCTCCTCCCTGCACAGCCTGGACTCCTGCTGGCTGCCTCTGCTGCACTGTCTTTCTGTGGCCCAGAACAATGTCACTCAGCTTCCACTGTTAGAGGACTTGATTTCACTGAAGACCCTGGATTTTAGTCACAACTGTCTTTCAGagctgaaGAATATTTTTCTAAGTCTTCAGGGATGCACTCGTCTCCAGGAGCTTAACATAAATGACAACCCTGTAGAGCAGGAGAACAACTGGAGGTCATCCATTCTGGCAGTAAAGCCAAACTTGATCAGACTAAATGGCAAACAGACTGGCGCCTCAGTAGAGCCCTCTGTAGGACCAACACAGCTATGGAGCTTCCAGGCCCTCTGTCAGGCACACCAGGATCAGCTTGACTCAGTACTGGAGAAACACAGCATGGAGATCAGCATGGCTCCCACTGTACTGGATGCACACCTTTTGGCCAGTAACCACAGTGCAGGGCTCCTTTGTTTGGCTGAACAGCAACGTTACGCTCATGAGTATGGTGATAGCAGCGTCTCTGACACCGCCACTCAAGAACCTGCTGCTTCCAGCTGCCTACAGGATGTGTTACATTGTAATGAGAGAACCCAACAGCATGCAGCAGAGCAAGAGACCCAGAGCCAGCCAGGAGCACACCTGCCTGTGAACATCCACGAGGCACACCTTGAGCATCCAAAAGCTGATATAACATCTGAGTGTGCAGGTGGCTGCATAAATCCTGCCCAGCAATCAAGGCCTTGCAGACGTGCCACTAAAGCTCCCAGCTTGGACCTCAAAACCATGGCAGCCATGGTCATCCAATGCCGCTGGCGGAAATACAGACGAACAGGCATTTCAAAACCACCTGCACCTCCCAAGTCTCAAGGGAAGCTGAGTCCTCAGAGAATGGTGGGGTCTAGTGGGAAGAGAATTGAGCCTCTTAATAAAGACTACGCTGCCACTGTCATTCAAGCAATATGGAGGGGCTACGCGCTACGGAGGAGGCTGGCTTGTGCTCTTGCTCTCGCCCAGGTCTCAGAGGGGGACGAGGCCTTTGAGGAGGTGGACATGGATGAATTCATTTTTGATGAGGAGGCGATGGAGAATGACTGGATAGCGCTGCATTCCGAAGCCTCAATGTCCGGATTGGCTAAATATTCGGAACAGCTGCTGCTGCCAAAGcctcctcttcctctgcctGAGATGCATAAGAATACACCTGAGCTGCCGTGGAAAACCAGACAGGCCTTTATTGGCAATGAGGGAGGAGCAACTACAGAACGGAGTCTATCACAGGAACCCAACACCAGAAGACCATCTCCACCATCATCGTTAAGACTCGGTGCTCCGCCAGAAAGATCAGAGAAAATTCTTAAAGAATGGGGCATTAACAGTGACTCCACTGCCCTCCTCATTCTAAAGAGAGCTCAGAAGATGAAGGGcaggaagcagcagcagcagagaaaaTTACTGGACCCAGCAGAGCGCCTAGCCCTGTTTAGGAAAAGCAGCAAACAGCCTGTGCCTGCGGAGTCCCGCAGAAGATATCAAGCTGAATCCAGAGATGAGCTTAAAGGCGCAGTCGGCCGAGAAGAAGTAAGTGTCGGTGATGCATCGAGCGGAGAGCCGAGGCAGACGCAGCAGCCTGGAACACACCAGTGGCTGCGCACTCCAGCCGTCCGGTCCCAGAGAAGCTCTGCCACTTCTGAAAGAGATCATTTCCTCCCAGAGATTGACCCTGAAATTCTGAATGGTGGGAGGGTTCAACTACTGGCCGGTACGAGGTACAGAGAAAGTCCAGATTCAGCAGGGAGGCTGTGGTCTGATCTCACAGGCTTCTCTTCACATCGCAGCCATCAGGCTCACGTCCGCAGACATTCAGTGGAAGATGCAAaaaaagaagTGCCGTCTCCCAAAAGAGTCACCTCGGCTCCATCACGGAAAGAGCGGATCTCGTTCCGAGACAACCCAGTCCAGCTGAGCGGAGGCTGGGGAGGAGGAAAGAAGAGGGCCAGAGTGAATaagtaaaaaagacaaaacaagatgTTCAAAACCATGAGATAATATCCTTTCATAAACCAGTGCCTTGTATTTTTATTGACACGTGAGGGTGTGGGCCTTTTTCTGAGactgatggatgtgtttttttattaacgtAAGCCTTTAACAAGCCTTACAATGTGCATTTGATCTCCACTGAAATTCCTTGCAGCTGCTGTTTCACTGAAATCTAGCTTCCTCCCTTGCAAATGAATTAAAAGCAATGGATGAGGTATAGCCCAAATATCTGCAGGCAGTCCCAGAATGCGTGTTGATCTCAAATATCAGTGACAGGGAAAGAGCTGTAGAATGGATGGAACCCCATATTTTCAAATGACATGCTTGATATGCAAAAGACAAAATCAATAAGAagcattttttccattttggctttgtttagatatttttaattcaCCCACCTTTATATGTAGAATGTAttccaataaaaacaaaaacaaatctggACAGCCTGATTTGCGTATATTGGATAAATGCCTGGTTGTTCAAAGCTCAGGCTGATTAAAGTTCTCGTGATTCATAAGCTCTTCTACTTTCTGATGATGGTATGCACCACAGGTCCATTTAAAATCAGAAGGATGTGACCTCCAACATAAGACAGACATTTTATtgcagctaaaaataaaaatcagtttgtggtaaaaaaaaaaaacaatgtcctaCAGAAACTAAACTTCagttaaaagtcaaagtaaCTTATTTATTAAAGACCAACACTGGGTTGACATCAAATTCATGACAGATAAAAAATGATGATTACTTAACAAGTCAACAACATTTCAACACCTAACAATGTtagaatttaaaaaagttaaagtttaatATCAAGTTTAATATCAAGTTTTTATCTAATATTATGTTATCTAAAATCTGCTTAGCAGATATTGGGTTTTGATCACCATATCTCAACTAATTGTTGGTACTTTCTAGGGGTGTACAGAAATCtcaatattgtattataatgtgaTGATTTGGCTTTTAATTAGGGGTGTGGTGAGATCTTGTGACACAAGATACTGCAAGATTAAAACAGCACAATGTTTCTCATCGGGTTTTAAATGGTTGCTCATTTTGGGCGGCAAACAGCAGCGCTGGTCCATAGACACACAAGGTCTGAAGAGACTCATATAAGATCATACAGGAGAGATGATGTTGGggttaaaactgtaaaactggcTGCAGTACGGCGGTACTGTTCTGTCTTTTACTGCATATGATTAAGAATATATAATTCACAATCAGAGTAAAAATTTATTAACACCCATACAAGATGACTACTTacaaaatattctaaatttaccagcagttttgcatttttgagttttaatcatatattaaatatatgaataaatataactttgaaa

Function

NR:

description
leucine-rich repeat and IQ domain-containing protein 1

GO:

id name namespace
GO:0015630 microtubule cytoskeleton cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679646.1 True 6500 mRNA 0.45 29 14588458 14632192

Neighbor

gene id symbol gene type direction distance location
LOC103026424 ctsd,LOC107686244,LOC107672285,LOC107740314 coding upstream 31195 14546807 ~ 14557263 (+)
bhlhe41 bhlhe41 coding upstream 49094 14533728 ~ 14539364 (+)
LOC103025600 itpr2 coding upstream 74312 14405581 ~ 14514146 (+)
eea1 eea1 coding upstream 213655 14343739 ~ 14374803 (+)
nudt4 nudt4,LOC107553971,LOC107740279,LOC107672310,LOC107686239,LOC105898052 coding upstream 246138 14323212 ~ 14342320 (+)
alx1 alx1 coding downstream 4600 14636792 ~ 14643499 (+)
nts nts coding downstream 99600 14731792 ~ 14737727 (+)
LOC103031823 LOC108263962,LOC107740339,LOC107583811 coding downstream 185876 14818068 ~ 14830344 (+)
LOC103031502 eif4g2b,LOC108431851,LOC107730533,LOC107569652,LOC103379577 coding downstream 475171 15107363 ~ 15120305 (+)
LOC103024643 NA coding downstream 511880 15144072 ~ 15148635 (+)
G158238 NA non-coding upstream 26327 14560650 ~ 14562131 (+)
G158093 ppfibp1 non-coding upstream 398416 14168959 ~ 14190042 (+)
G158086 endouc,LOC108425714,LOC107749311,LOC107686338,LOC107672228 non-coding upstream 431425 14151418 ~ 14157033 (+)
G158085 NA non-coding upstream 437969 14149486 ~ 14150489 (+)
G158068 NA non-coding upstream 471615 14116319 ~ 14116843 (+)
G158335 NA non-coding downstream 278766 14910958 ~ 14919932 (+)
G158357 NA non-coding downstream 346551 14978743 ~ 14980092 (+)
G158359 NA non-coding downstream 375313 15007505 ~ 15008083 (+)
G158381 NA non-coding downstream 437594 15069786 ~ 15070409 (+)
G158417 NA non-coding downstream 490946 15123138 ~ 15123669 (+)
LOC103042073 LOC103042073,LOC108418727 other upstream 608433 13973821 ~ 13980025 (+)
LOC107197649 LOC108416831 other upstream 845958 13733945 ~ 13742500 (+)
hsbp1 hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299 other upstream 1847456 12735519 ~ 12741002 (+)
LOC103031933 ttc38,LOC103031933,LOC108414465,LOC104940279,LOC106573176,LOC100694777,LOC107722483,LOC107673144 other upstream 2221688 12340006 ~ 12366770 (+)
hipk2 hipk2,LOC107722467 other upstream 3444987 11031065 ~ 11143471 (+)
G158369 NA other downstream 418030 15050222 ~ 15050718 (+)
LOC111194769 NA other downstream 496176 15128368 ~ 15137270 (+)
c18h11orf16 NA other downstream 674020 15306212 ~ 15315552 (+)
LOC103041858 NA other downstream 1135863 15768055 ~ 15768661 (+)
LOC107197617 NA other downstream 1139103 15771295 ~ 15771945 (+)

Expression


Co-expression Network