LOC103031823 (LOC108263962,LOC107740339,LOC107583811)


Basic Information

Item Value
gene id LOC103031823
gene name LOC108263962,LOC107740339,LOC107583811
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 14818068 ~ 14830344 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679648.1
gaatgtgaaccgtcaaaatagccaaatcagatctgagcaaaaaatctgattgcaGCAATGTGGTTTGTTATGTGAACGTAGCCCTAGAATcttcttttgtgtgcattaaagaaaacagcattcgtattttcatttttccatcACCCAAAACTAATTCAGGTCTGTAAGGGATGACTTATGATTAACCACAaataatcagataaaatgttttaatcaattgacaTCACTATGTCAAGTACATATAAACACTAAATATGCAAAGTTTCTCTGAGGCACTTGGAAAAGGGATTGACACCTTCGCACCACTGCTGAGCAGGAGCTATTAGGAGGCAGCTAAAATATTTGAGCATCTGGAGCATGTAAACACAACTGCAATCGGAGGCGAAAACAAATCTGCTGGTAGTGGAACGACGTGCTGCTTTCCAGCGTTCAGAGTGTTGATTTATTTATGCGGGGAGAACAAGAGGGCCCCGGCTGAGGCCGGACACCGGACCGCAGAGCTTATCCTCTTCCCCCGCTGCCGGACAAGAAAGAGGGGAGGAGGCTGCGGCATTAAAGATGCATGGGGACCAGTGCGTGGAGTTTAAAGTTCTCCACGCTTTATGCAGGCCTGCTAAAATATTCATGACCTACACTGCATGCGCAGGCTGGAGCACATCGAATTCTCTTTCCACTGAGACAGAAGGTGCAGAGCTCACGGCAAAGCAAGCACGGCCTCGTCTGATAAAGGATGCTTGAGTCGTCTAACAGCGACGGCCAGCGCGCCAGGGTTCTCTATGACTTCGTGGCCCGAAACGCCAACGAGCTGTCCGTCCAGAAGGGCGATGTGCTGCAGGTGCTGAACAATGAAAAGCAGTGGTGGATGCTGAGGAACCGCAGCGGTCAGCTGGGCTATGTGCCCTGCAACGTGCTGGAGGAAGTCAAGGAGGGAGAGACAGTACAGTACAATCGGGCTGCGCTCTTCAACAGCCAGgcCGCGAATCCGTACAAAGCTAGCTCTCCCCCTGCCTCGGTAAATCATGGCGAGAGTGTGGAGATGAATAAATCCTCGCGGGACAAAGACAaccGTACCCAGCAGAAGGAGATGAACGATGAGCTTTTGAAGCGGATCACGGACAGCAAGGCTCAGCCACCTGCTCGCAACTTCCGTGTGGAACACTCCGCCAGAACTGCTCCCATCACTTATCAATCTCAGCCTTACGAGGTCCATGCCTGGCTCAACGCCAAGGGCTTCTCCAGGCCGGTGGTGGACTGTCTGGGTATTCTGTCTGGAGAGCAGCTCTTCTCTCTGAGTAAAGACGAGCTGCGAGCGGTGTGTGGAGATGAGGGCGCGAGGGTATTCAGCCAGATCAGTGTGCAGAAGGCCCAGATAGAGaGGAGCTGTGGAAGCTCCGAGCTGGAGGAAGTCATGAGGCGGCGGCAGCAGGAGGTGGACACTTTTACTTGGGACTGATTGCCTTCAATCTGCCTGTCAATCAAAACCCAGTTCCATCCTGTCCTTTCAGCTCCACTGCTCACCTAACACACTCCCAGATTCACCACAGTGGGAATGAATAACTCAGTGAATGCTGTCACTAGCCTCTGTAATATACCACATCGAACACTAGCTGCTGAATCGCGCGACACGGAACGGATCCGAACGCTTGTTTATGCTAATcctgtattatttattcttGTCTATTTGCACTGAATCTGTTTGTGAGACAAGATGGAAGAAgactgtatgtatataatgaAGTCTGAATTAATATTTGTGGCTCTTCctgcagaattatgttaaaaaaatgtttttgttgggAAAGTTATAGATGCTGAAAGTATCTCTGATATACTGAACCTTGTATTTAAGACAATAAACCTTTAAACAGAATCAGTATACCAGATAAAGGGTGTAACTTTCACATTTATGACAATTAAacgtattaaaaatatatatttaatgatatcTACTAGACTAGACTAATTATTAAAGGAAGTctaataattcagtgtttttgaaGCCAATACAAATCAACTTCACCATCATCACCTGAATGTCGATACCAATCAAGGCAAAGACCAATCAAACTTGGTAATGCATCATCATGCAGGACTTCTGTAATGCTTTGTAACTACTCTTAAAATTATGTTGAACTTAAA

Function

NR:

description
PREDICTED: epidermal growth factor receptor kinase substrate 8-like protein 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679648.1 True 2139 mRNA 0.46 7 14818068 14830344

Neighbor

gene id symbol gene type direction distance location
nts nts coding upstream 80341 14731792 ~ 14737727 (+)
alx1 alx1 coding upstream 174569 14636792 ~ 14643499 (+)
lrriq1 NA coding upstream 185876 14588458 ~ 14632192 (+)
LOC103026424 ctsd,LOC107686244,LOC107672285,LOC107740314 coding upstream 260805 14546807 ~ 14557263 (+)
bhlhe41 bhlhe41 coding upstream 278704 14533728 ~ 14539364 (+)
LOC103031502 eif4g2b,LOC108431851,LOC107730533,LOC107569652,LOC103379577 coding downstream 277019 15107363 ~ 15120305 (+)
LOC103024643 NA coding downstream 313728 15144072 ~ 15148635 (+)
rnf141 rnf141,LOC107672299,LOC107740332 coding downstream 319707 15150051 ~ 15155609 (+)
nrip3 nrip3 coding downstream 468601 15298945 ~ 15304011 (+)
LOC103021723 LOC108426425 coding downstream 490926 15321270 ~ 15331330 (+)
G158238 NA non-coding upstream 255937 14560650 ~ 14562131 (+)
G158093 ppfibp1 non-coding upstream 628026 14168959 ~ 14190042 (+)
G158086 endouc,LOC108425714,LOC107749311,LOC107686338,LOC107672228 non-coding upstream 661035 14151418 ~ 14157033 (+)
G158085 NA non-coding upstream 667579 14149486 ~ 14150489 (+)
G158068 NA non-coding upstream 701225 14116319 ~ 14116843 (+)
G158335 NA non-coding downstream 80614 14910958 ~ 14919932 (+)
G158357 NA non-coding downstream 148399 14978743 ~ 14980092 (+)
G158359 NA non-coding downstream 177161 15007505 ~ 15008083 (+)
G158381 NA non-coding downstream 239442 15069786 ~ 15070409 (+)
G158417 NA non-coding downstream 292794 15123138 ~ 15123669 (+)
LOC103042073 LOC103042073,LOC108418727 other upstream 838043 13973821 ~ 13980025 (+)
LOC107197649 LOC108416831 other upstream 1075568 13733945 ~ 13742500 (+)
hsbp1 hsbp1,hsbp1b,LOC107583924,LOC107553992,LOC107670150,LOC107749299 other upstream 2077066 12735519 ~ 12741002 (+)
LOC103031933 ttc38,LOC103031933,LOC108414465,LOC104940279,LOC106573176,LOC100694777,LOC107722483,LOC107673144 other upstream 2451298 12340006 ~ 12366770 (+)
hipk2 hipk2,LOC107722467 other upstream 3674597 11031065 ~ 11143471 (+)
G158369 NA other downstream 219878 15050222 ~ 15050718 (+)
LOC111194769 NA other downstream 298024 15128368 ~ 15137270 (+)
c18h11orf16 NA other downstream 475868 15306212 ~ 15315552 (+)
LOC103041858 NA other downstream 937711 15768055 ~ 15768661 (+)
LOC107197617 NA other downstream 940951 15771295 ~ 15771945 (+)

Expression


Co-expression Network