LOC103039437 (tle3a,LOC108424090,LOC107596960,LOC107672253,LOC108264729)



Basic Information


Item Value
gene id LOC103039437
gene name tle3a,LOC108424090,LOC107596960,LOC107672253,LOC108264729
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 17763691 ~ 17797748 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_022679682.1
TTTCGCGGCAGCCCGGCCCTCGTGTCGGTAGACTGTCTGTGTGTGGCACGGCTCTGCTGGACGGAGGGGAAATGTTAGAGTGGAGTACAGCGGTACACTCCGAAACCTTCCAAACCTCTTCAAAATCGGAAGTACATTTTGGcaccatcttttttttctctgcccGGATTATGCGGACCTGTTTTTCGCTTCTTCTGTGACACGGTTCGCCCGAGCccggagtgtgtttgtgtgtgtgatttagaGAACTAGAGAGTTCAGTCTTGGTCGCCTTTTCTTTGGACGTTCGGAGTCGGAGACCCAGCTGCCTTCCTCCTGCACTGAGTGGGAGATGAGGACGGCGTCGAAGGAGACGGGGTTCGACGTCTGGGAACCGGAGAGTGAACAGTAGCCGGGCGGCTGAggtttttttgtgtaaagttATCTGCCTGGGTTTTTGAAGCGGTGGATGCGAGCGGACGGCTGAGACGCGAAGGCAGAGCCAAGTAAGCCACCCACTTCTGCTGAAAAGCTAAAGGATAGGTTACAAAATGTATCCACAAGGCCGGCATCCGGCGCCCCACCAGCCTGGTCAGCCGGGCTTCAAATTCACAGTGGCGGAGTCCTGTGACAGGATCAAAGACGAATTTCAGTTCCTGCAAGCGCAGTATCACAGtCTTAAGGTGGAGTACGACAAACTGGCCAACGAGAAGACTGAAATGCAGCGCCACTACGTTATGTACTATGAGATGTCCTATGGGTTGAACATTGAAATGCACAAACAGACTGAGATCGCTAAAAGGCTTAATGCAATTCTAGCTCAGATCATGCCTTTTCTGTCACAAGAgCACCAACAGCAGGTTGCGCAGGCTGTTGAACGTGCCAAGCAAGTGACAATGACAGAGCTGAATGCCATCATCGGGGTACGTGGACTTCCCAATCTGCCTCTAACCGTGTCACAGCTCCAGGCACAGCACCTCTCTCACGCAGCCCACGGCCCCGTGGCTCTGCCCCCACATCCCTCGGGCCTGCAACCCCCAGGCATCCCTCCAGTTACGGGCTCCGGTTCAGGCCTGCTGGCGCTGGGCGCTTTGGGTAGCCAGCCCCACTTGCCTGTAAAGGATGAGAAGAACCATCACGACCTAGAACACAGAGAGAGCACGAACaactccatctctccatccgaTAGCCTGCGTACATCCAGTGAGAAGCACCGTGGATCCTCAGATTACAGCCTGGACTCCAAGAAGCGCAAAATGGAGGAGAAGGACAACATGAGCAGATATgaCAGTGATGGAGACAAAAGTGATGATCTTGTGGTCGATGTCTCTAATGAGGACCCTGCCACGCCCCGCGCAAGCCCAGCCCATTCTCCGCCAGAAAATGGCATTGACAAACCCCGCCCCCCAAAGAAGGACACACCCAACAGCCCTGCATCTGTGGCCTCCTCCGGCAGTACACCTTCCTCCAAAACCAAGGAGCATGGCCATaatgacaAATCCTCTACGCCTGGCCTCAAGTCCAACACCCCCACTCCACGGAACGATGCCCCTACCCCTGGCACTAGCAGCACGCCGGGGCTGAGGCCCATCCTTGGCAAGCCCCCCATGGAGGCTCTGGCTGCTCCTGCACTGCGAACCCCCCTCTCCTATCCGACTCCTTTTGCCATGATGGGCCACCATGAGATGAACGGCTCACTGACCAGCCCTGGAGTCTACGCTGGCCTGCACATCTCGCCTCAGATGAGTgcggctgctgctgccgccTACGGTCGCACGCCCATTGCGGGCTTCGAGCATCCTCATATGAGAGCCCCAGGCCTCCCTGCCAGCCTTACCTCTATCTCTGGGGGAAAGCCgGCCTATTCCTTCCACGTCAGTGCCGATGGGCAGATGCAGCCTGTGCCCTTCCCTCCAGATGCTCTGATTGGCCCTGGGATCCCCCGTCATGCCAGGCAGATCAACACTCTGAGCCATGGCGAGGTGGTGTGCGCCGTCACCATCAGCAACCCCACACGGCACGTCTACACTGGTGGCAAGGGCTGTGTCAAGATCTGGGACATCAGCCAGCCTGGCAGCAAGAGCCCCGTGTCCCAGCTAGACTGCTTGAACCGGGATAACTACATCCGCTCCTGCAAACTGTTGCCTGATGGGCGCACGCTGATCGTGGGCGGTGAGGCCAGCACTCTGACCATCTGGGACTTGGCCTCGCAGACGCCCCGCATCAAGGCCGAGTTGACCTCTTCGGCCCCTGCCTGCTATGCTCTGGCGATCAGCCCCGATGCCAAGGTGTGCTTCTCCTGCTGCAGTGATGGCAACATTGCTGTCTGGGACCTGCACAACCAAACCCTTGTCAGGCAGTTCCAGGGACACACTGACGGTGCCAGCTGCATCGACATCTCTCATGATGGTACCAAGCTGTGGACGGGAGGCCTGGACAACACTGTGCGTTCGTGGGACCTGAGAGAAGGTCGGCAGTTGCAGCAACATGACTTCACTTCTCAGATCTTCTCACTGGGCTACTGCCCGACGGGCGAGTGGCTGGCAGTGGGCATGGAAAGCAGCAACGTTGAGGTGCTCCACCACACCAAGCCTGACAAGTACCAGCTCCACCTGCATGAGAGCTGTGTGCTTTCCCTCAAGTTTGCCTACTGTGGTAAATGGTTCGTGAGCACTGGGAAGGACAATCTGTTGAACGCTTGGAGGACTCCCTACGGCGCCAGCATATTCCAGTCAAAGGAATCATCCTCGGTCCTGAGCTGCGACATCTCGGCAGATGACAAGTACATTGTCACCGGCTCCGGCGACAAGAAGGCCACGGTGTATGAAGTGATCTACTAGACAGTGAGGTAACTGAGTAGAGAAGCTCGGGCCTTGTAGAGTGAGAACAGAGCGTTTGGAGGGGGTGCCACCTTCCTGCTCTTCACGCCAATGACTCTTCtagtcagacagacaggacaggacTGGACAGCACCTGTCTGCCTGActatctgtctcactctcatcCTCTCCTGTCGCCCAGTCATGGACGGCATGTCTGACAGCAGCGTGGAAGGATTAGTCATGGATGGGACTGGGATAAACTAAACTTTTGATCTgaactgatctgatctgatctggactggactggactgggaTGAATTGTACTGGACTGGACTGAACCACCTGGACAGCCATTAACCTGGTTGGGCTGCTTCTAATACTTGCTCATCCCTCATCCCATCAGCCACATCCAGCACAAGTCATATGGCACTAGAGAAgagaataactttttttttttcttcgtatCTTGTTGgatttttgttatgttttttttttttttttttttttttttaaatacagtgagAATGTTCCATATTGCAACGTGAAGCGGTGCTTCGTTCTGAAACTCTATCCGTTTGGAGGTTCTGTGAAAAGTGTACATAATGGAGTATTAAAAGGCcttttatagatttatattttGGTGTCCAGTTACACTTGTGATGgttccttccctccctcccccaTCATCTCCTCAATGCTTTGTTTTTCCGCTGGGGCTTGGAAATTAGattatgaccttttttttttctaaggatattctatctctttttttctgagaaGTTCCTTTTCCAACCTTTTATAGAAatctaatttacttttttttccctctgaaAAACAATTTTGAGCTAGATCGCATTTCAGAgaagctttctttctttttctttttttctaaatgtccTGTGGATCTTGCCCCTTCTCTCATGGTGGAACGCTCTTGCCTTAGCAGTCCTGTAAAGCACCTGAGGCTGCAGCTGCGGCTCAGCAGGAACAGAAGAGCAGCTGCTGCAAAAGGAGGGCAGGCGCTCAAGACTCGGTCTAAGGAAAAGTGACTGTTCTGTTCTAACTACCTGCCAGTGGCCCCCATGAAAAGAGACCGATCCCCTTCATGCTGTGGACCGACTgggggactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggaataacTTTCGCTCGTACTGACTGATCGGAGGACCCTTCCGTAACCTGTGACTTCTTCATTGCATTAGTGTATGAACAGGACACAGCATTTTGTCTTGTAGACGATGACCATAAGTTATGATGATGGAGTTAATATTTTGCTCCAGGTCTCTCTGTTTTGGAGCCGTTGTGACGTTCTCTGAGGGTGGGAgtcatgtgtttgtgtgcatagtGTCTCTCGTATGCAAGAAGCACAGAGTCGGCTAATGTGTCTGCAGCTAAGCCAAACACAGCAAAGCATAAAAGACTAAGGACTAAAGCGGAGACTTTTACCAGATGATTTGGTCAATTTCTAGTTCAAGTTCAAATCCATTGCATCCCACTACTGCGTCTCAACACAACCAAAGTATGTAGCAAAATGTGTTGTCACTGAAGAGATGTACAGTTGTTAATTCAAtaaactgtttttcttttttgtaaaaaagaaaagaacaaagaa

Function


symbol description
tle3a Predicted to enable transcription corepressor activity. Acts upstream of or within regulation of retinoic acid biosynthetic process and sclerotome development. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in several structures, including axis; central nervous system; cranial ganglion; mesoderm; and neural rod. Orthologous to human TLE3 (TLE family member 3, transcriptional corepressor).

NR:

description
PREDICTED: protein groucho-2 isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:1900052 regulation of retinoic acid biosynthetic process biological_process
GO:0005634 nucleus cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
K04497 GRO, TLE; groucho

RNA


RNA id representative length rna type GC content exon number start site end site
XM_022679682.1 True 4440 mRNA 0.52 21 17763691 17797748

Neighbor


gene id symbol gene type direction distance location
LOC103024336 NA coding upstream 118442 17625054 ~ 17645249 (+)
morf4l1 morf4l1,LOC107596963,LOC107686360,LOC107738770,LOC107708218,LOC107672187 coding upstream 141563 17610877 ~ 17622128 (+)
LOC103025173 pias1b,LOC108424062,LOC108264782,LOC107596961,LOC107738708 coding upstream 159142 17577392 ~ 17604549 (+)
LOC103029280 skor1 coding upstream 191774 17563875 ~ 17571917 (+)
c18h15orf61 cunh15orf61,c4h15orf61,LOC103025902,LOC107738714,LOC107583911,LOC107718314,LOC107686305,LOC107596966 coding upstream 264920 17493793 ~ 17498771 (+)
ddb2 ddb2 coding downstream 151382 17949130 ~ 17958434 (+)
kbtbd4 kbtbd4,LOC107708223,LOC107738697,LOC107596956,LOC107672308 coding downstream 166635 17964383 ~ 17968936 (+)
LOC103029004 NA coding downstream 188245 17985993 ~ 17994370 (+)
agk agk coding downstream 206259 18004007 ~ 18010554 (+)
wee2 wee2 coding downstream 226156 18023904 ~ 18030005 (+)
G159028 NA non-coding upstream 164337 17596059 ~ 17599354 (+)
G159017 aagab non-coding upstream 306714 17455315 ~ 17456977 (+)
G159014 NA non-coding upstream 312359 17448832 ~ 17451332 (+)
G158991 NA non-coding upstream 479809 17283467 ~ 17283882 (+)
G158882 rpl4 non-coding upstream 586499 17173067 ~ 17177192 (+)
G159115 NA non-coding downstream 72259 17870007 ~ 17870468 (+)
G159120 kif23,LOC107686310 non-coding downstream 129240 17926988 ~ 17938088 (+)
G159122 NA non-coding downstream 144568 17942316 ~ 17946683 (+)
G159129 NA non-coding downstream 197950 17995698 ~ 17996728 (+)
G159182 NA non-coding downstream 310415 18108163 ~ 18109539 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other upstream 391485 17327100 ~ 17372206 (+)
zwilch zwilch other upstream 574440 17177675 ~ 17189251 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other upstream 591463 17101612 ~ 17172228 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other upstream 965291 16779506 ~ 16798400 (+)
st3gal2 st3gal2,LOC107686287,LOC106573711 other upstream 1038482 16654136 ~ 16725209 (+)
rapsn rapsn other downstream 173348 17971096 ~ 17985904 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other downstream 727780 18525528 ~ 18576437 (+)
G159666 NA other downstream 2387768 20185516 ~ 20186919 (+)
G159728 NA other downstream 2938850 20736598 ~ 20737049 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other downstream 3211554 21009302 ~ 21011794 (+)

Expression



Co-expression Network