kbtbd4 (kbtbd4,LOC107708223,LOC107738697,LOC107596956,LOC107672308)


Basic Information

Item Value
gene id kbtbd4
gene name kbtbd4,LOC107708223,LOC107738697,LOC107596956,LOC107672308
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 17964383 ~ 17968936 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679687.1
ACACTTGTCAGCGCTGACATCACCAGCAGCGCGCCGCCCTGCACAGCAAAACATCACACACGCGCTTCACCTGAGAGTTTCAGCTGGAAGTTCCTGCAAAAGCCTGCTGAGGAGACGCTGCCTTCACCCAGCAGATGCCATGGAGTCCGGGGATGATGGGGGCCTCAGTGTGGGAGGCTCGTCCGGAGAGGAGAACTACTTTCAGGGCTACACGTTCACAGACCGCTCCCACTCCAGCCGCGTGGTGAAGAGCATCATGGACCTGTGCCTGGAGGACGGCCTATTCGCCGACGTCTCCATCACGGTGGACGGCAAGGAGTTCCAGCTGCACCGCCTGGTGCTGTCGGCGCAGAGCAGTTTCTTCAGGTCCATGTTCACCTCCAACCTCCGAGAGGCCCACGACCGCAACATCGAGCTTAAGGACGTGAGCGCATCCGTCTTCCAGCTGCTGGTGGACTACATCTACCACGGCACCATCAAGCTGCAGGTAGAAGACCTGCAGGACACCTACGAGATGGCTGACATGTACCAGCTGACAGCCCTGTTCGAGGAGTGCTCCCGCTTCCTCTCGAGAACAGTGGAAGTCAAGAACTGCCTGCAGGTGATGTGGCTGGCAGACAGGCACAGTGATCAGGAACTGTACACAGCAGCTAAACATTGTGCCAAGATTCATCTTGTCCAGTTGCACCAGACAGATGAGTTTCTCAACCTGCCTTTGCGTCTCCTCATGGACATCATCAAAGATGGCGTTCCAAGCTCTCAAAATCCAACAGCAGCAATCGAGTCTTGGATAAACCACAACAAAGTTGAGCGAGAGGAGTTTTCAGACATGCTCTCAGATGGCCTAAAGGAAATTGGTGAGAACGTGCACATCTACCTGATAGGTAAGGAGGACACACGAACACACTCACTGGCTGTGTCACTTCACTGCGATGAGGACGACGCCATCAGTGTGAGCGGTCAAAACAGCCTGTGCCACCAGATCACAGCTGCCTGTAAACATGGCGGTGACCTGTACGTGGTAGGTGGCTCCATCCCACGCCGTATGTGGAAGTGCAATATGCACACCATGGACTGGGAGCGCTGTGCTCCGCTGCCTCGTGATCGCCTACACCAAGCGCTGGTGTCTGTGGCCAGTGAGGATACCATCTACTCGTTAGGGGGCAAGACCATAAAGGACACTTTGTCCAGTGCAGTGATCTTCTACAAGGTGCGGGACAACATGTGGACTGAGACGAGCCAGCTGGATACAGCCGTGTCGGGTGCTGCCGGAGTCAACCTAGGTGGGACCATCTATCTGCTAGGTGGGGAGGAAAATGACGCTGACTTTTTCACCAAACCATCTCGCCTTATTCAGTGCCTTGAAACAACCACGCAAAAGTGCCAGACCAAGCCATACATGCTGCCCTTTGCTGGATGCATGCACGCCACTGCTCATAAGGACTTGATCTTTGTAGTGGCTGAGGGTGACTCTTTGGTATGCTACAACCCGCTGCTGGACAGCTTCACCCGCCTTCGCTTCCCGGAGGTATGGAGCTGTGTGCCCTCGCTGTGGAAGGTGGCCAGCTGTAATGGTTGTATTTACGTCTTCAGGGACAAATGTAAAAAGGGAGATGCTAACACATTAAAGTTAAACCCTGCCACTTCTGTAGTGTCCGTGATCAAGGGAATCAAAATCCTGCTCACAAACTGGCAGTTCGTATTGGCCTGATGTTCAACATCGGAACAACATTTCAAATGTTTACATTGTGGGGGACCATGTGGACTTTAAGCCTACAGTTTGCAGTGATGGTGGTGAACATATATTGTAGTAGGAAAAAGCCGTAGTTCAAGACCGTGGTTTTGTTCTTTTGCTTTTGTGTTACAAGCTTTATGCAGTCGTGCAATGTGTTACACTGCTGCCGCACAGTGTCAGTGAAAGTGGTATGAAGTTTGATGGGTacgtttactttacttttttggtGTCAACCTTGAAGTGTGAGTTTTTTAAGTGATTATGTTGCAAACAGTATGAACTACCAATGTTATTGTCTCAGTAGTAATTGATTGTCTTGATACAAAAGTAGTTTGTCAATAAATGCTCACCAGAAAGAAGGTTTGAGTGCAGGTTAAA

Function

symbol description
kbtbd4 Orthologous to human KBTBD4 (kelch repeat and BTB domain containing 4).

NR:

description
kelch repeat and BTB domain-containing protein 4

GO: NA

KEGG:

id description
K10472 KBTBD4; kelch repeat and BTB domain-containing protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679687.1 True 2113 mRNA 0.51 5 17964383 17968936

Neighbor

gene id symbol gene type direction distance location
ddb2 ddb2 coding upstream 5949 17949130 ~ 17958434 (+)
LOC103039437 tle3a,LOC108424090,LOC107596960,LOC107672253,LOC108264729 coding upstream 166635 17763691 ~ 17797748 (+)
LOC103024336 NA coding upstream 319134 17625054 ~ 17645249 (+)
morf4l1 morf4l1,LOC107596963,LOC107686360,LOC107738770,LOC107708218,LOC107672187 coding upstream 342255 17610877 ~ 17622128 (+)
LOC103025173 pias1b,LOC108424062,LOC108264782,LOC107596961,LOC107738708 coding upstream 359834 17577392 ~ 17604549 (+)
LOC103029004 NA coding downstream 17057 17985993 ~ 17994370 (+)
agk agk coding downstream 35071 18004007 ~ 18010554 (+)
wee2 wee2 coding downstream 54968 18023904 ~ 18030005 (+)
LOC107197792 LOC107197792 coding downstream 61552 18030488 ~ 18035696 (+)
cftr cftr,LOC107738689,LOC107583749,LOC107596947,LOC107708216 coding downstream 165781 18134717 ~ 18164724 (+)
G159122 NA non-coding upstream 17700 17942316 ~ 17946683 (+)
G159120 kif23,LOC107686310 non-coding upstream 26295 17926988 ~ 17938088 (+)
G159115 NA non-coding upstream 93915 17870007 ~ 17870468 (+)
G159028 NA non-coding upstream 365029 17596059 ~ 17599354 (+)
G159017 aagab non-coding upstream 507406 17455315 ~ 17456977 (+)
G159129 NA non-coding downstream 26762 17995698 ~ 17996728 (+)
G159182 NA non-coding downstream 139227 18108163 ~ 18109539 (+)
G159184 asz1 non-coding downstream 145069 18114005 ~ 18128429 (+)
G159272 NA non-coding downstream 442376 18411312 ~ 18411936 (+)
LOC111194744 NA non-coding downstream 444425 18413361 ~ 18413950 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other upstream 592177 17327100 ~ 17372206 (+)
zwilch zwilch other upstream 775132 17177675 ~ 17189251 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other upstream 792155 17101612 ~ 17172228 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other upstream 1165983 16779506 ~ 16798400 (+)
st3gal2 st3gal2,LOC107686287,LOC106573711 other upstream 1239174 16654136 ~ 16725209 (+)
rapsn rapsn other downstream 2160 17971096 ~ 17985904 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other downstream 556592 18525528 ~ 18576437 (+)
G159666 NA other downstream 2216580 20185516 ~ 20186919 (+)
G159728 NA other downstream 2767662 20736598 ~ 20737049 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other downstream 3040366 21009302 ~ 21011794 (+)

Expression


Co-expression Network