LOC111194773 (LOC106934266,LOC108233135)


Basic Information

Item Value
gene id LOC111194773
gene name LOC106934266,LOC108233135
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 18496094 ~ 18500819 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679698.1
TTCATGATGAACCGGCTCAAGAGGAAAAACCTGAAGTAAGCCAACAGAGAGACAGTACTTCTACTGCCTTATGTAATATGAACATAACCAATGCTGACCGCACTTCAATGACAGTCCCGGTGTGGCTCTCTAGTGCTGTCAGAAATAGCCCAGAGATCTTGGTGTATGCTCTGTTAGATACACAAAGTAGCAATACATTTGTTACTGAAGATGTGTGCGAAAAACTGGAAGTGCACACTGAACCTGTTAAACTCAAGTTGTCAACAATGACTGACAGGTCAATAGTGAATTGTCTCAGAGCCAGTGGGTTAAAGGTCAGAGGATACAGTTCCGAAGAATGCATTGAACTACCACCAGCTTACACTCGAGAAGCCATCCCGTTGGAGAAGACCAGTATTCCAACTCGTGAAACAGCCAAAGAATGGACACACTTGCTTAGCATAGCTGACGAGATGCCAGATTTGCTAGACTGTCCTGCTGGACTGCTAATAGGCTACGACTGTGTCAGAGCTCTAAAACCGAAAGAAGTCGTATCTGGAGCCGAGCATGAGCCATACGCAGTGAAAACAGATCTCGGGTGGAGTGTAGTTGGTGCCAAAACGCCTACTATTGGTGAAGGAACAAATGCTGGATTCTGTTATCGCATCTCTGTAAAGGAAATTCCACCTATTACACCTGCATGTGCGATTAAGGCTCTAGAGAAAGATTTTCAGGATACAAACCCTTCAGAGGGAACGATCTCTCAAGAAGACATTCAGTTCCTACAAATTCTGAATGAGGGAATTCATCACAATGACGATGGTCATCTGGAGATGCCTTTGCCTTTTAGAGAGCGCCCCCAGCTGCCTAACAACAAACATCTAGCCACAGTTAGGCTGAAACATCTGAGAGGGAAGAtggaaaaaaatcccaaataTAAGGAAGACTATGTTCAGTTCATGGTCAATGTTTTCAAGGATGGTGATGCAGAGGAAGTACATGCAACACCAAAAGACGGGAACGCCTGGTACATCCCACACCATGGGGTTTACCACCCGCGAAAGCCAGAGAAGATAAGAGTTGTCTTCGACTGTTCTGCCAAATACAAAGGCACTTCGTTGAATGATCACCTTCTCACGGGACCTGATTTAACCAACGCCTTGACTGGAGTGCTGTGTCGGTTCCGACAGTATCCAATTGCAATCAACTGCGATGTCGAGAAAATGTTCCACCGCTTTCATGTTACTCCAGAAGATAGGGATTTCATGAGGTTCCTGTGGTGGGAGAATGGGAACACAACGAGTGAACCTAAGGAATACCGCATGAGGGTGCACATATTTGGAGCTGCATCATCGCCAGGATGCGCAAATTATGGCATGAAATACCTTGCCACCAAATATGAGATTGAGTACCCCATGGCAGCAAGCTTCATCCAGAGAAATTGTTATGTGGATGATGGATTGGTTAGTCTAGCTACTGTTGAAAAGGCCAAGCAACTTGTCCATGAAGCAAGAGAAGTCTGTCAGAAGGGACAACTGCGACTGCACAAGTTTGTTTGCAATAACAGAGATGTTTTGGAGACCATTCCAGAGAGTGAGCTTGCTGTAGAAGTGAAAGATGTAGACTTAAACTACACAGAGCTACCAGCCCAGAGAGTGCTAGGAGTGAAGTGGAACATAGAAAGGGAtgtcttctcattcaatgtggtCCAACAAGAAAAACCAGACACTCGACGAGGCATCTTATCTACAGTCGCCAGCATATATGATCCATTAGGATTTCTGGCCCCCTACATCTTGACTGGGAAAAGAGTCTTGCAAGAAATGTGCAAGCGAGGTGTAGGCTGGGATGAGCCTGTCCCACCAGAATTAAGGCCAAAGTGGGAGACATGGCTCAATGACCTGAACAATCTTCAAACCATTCAAATACCCAGGTGCTTTGTACCCAACAATCTTGGCACGATCCAGAAGATTGAGCTGCATCACTTTTCTGATGCTAGTAATGATGGATATGGGCAGTGCTCTTACATACGGATCGTAGCTGAAGAACAAGTGCATTGCACTTTAGTTATGGCCAAAGCTAGAGTAGCACCTATGAAGATTGTCAGTATCCCACGTCTGGAGCTGACCGCGGCCACAATCTCTGCAGTCGTAAGCAAGATTCTTAGAAAAGAGCTGGACCTGAGGATAGATGCTGAGTACTTTTGGACGGATTCACAAGTGGTACTGGGGTACATCAAGAACGATGCCCGGCGCTTTCATGTGTTCGTCGCGAATCGGATCCAGAAAATCAGAGAGTCTACTGACCCCAATCGATGGTTTTACATTGAAACAAGTCAAAACCCTGCAGATCATGCATCTCGAGGACTCAAGGTGGCAGATCTAATGGCATCGGATTGGCTAAGAGGACCCAATTTCTTATGGGAACAGGATATTGTGACTAACCCAGCAACTCCAGAGCTTCTAATAGGTGACCCAGAGGTCAAGGTACTGAAAACTGATGTTGTGAAGGAAGCTGATCTCTTGAAAAGGTTGGAAAGATTTTCAGACTGGGTCACTTGCCTTAACGTCATTGCTCGTATTCAGAGGCTGGCACATAGGGACATATCTGGGCCTGTTACTGTAGAAGAGCGAAAGAAGGCAGCTCTCGTAGTGATTAAGGCAGCACAAAGGGAAGCATTCGGAGAAGAGCTGAAACTGCTTAGCCAAGCACAAAAACTCAGGAAAACTCATAAGATGTATGAGCTTGACCCGTTTCTTGAGGACGGAGTGCTCAGAGTTGGTGGCAGGTTAAGAAGGTCATCGGCTTCGCTTGAGTTCAAACATCCCGTAATACTCCCGAAAGAAGGCATCGTAACGCACTTGATACTTGACCATTGCcacaaaagaacacagcacCAAGGCCGAGGGCAAACACTAAACGAGCTCAGAGCCAACGGATACTGGATCATGGGTGCCAGTAAAGTGGTGGCCAAGCATATCAAAAGCTGTGTGACATGTAGGAGGGTGCGGGGCCGAACTGAAGAACAGCGCATGGCTGACTTGCCTGTTGATCGAATAGAGCCATCACCTCCTTTCTCATATACAGGTATCGACTGCTTTGGCCCTTTCTACACGAAACAAGGTAGAAAGGAGTACAAGAGATATGGGCTGTTGTTAACATGCCTGAGCTCAAGGGCCATCCATATCGAGATGCTCGAGGATCTGACAACAGATGCATTTCTAAATGCATTAAGATGCTTCATTGCAATAAGAGGAACAGTCAGACAAATCAGATCTGACCAGGGTACGAATTTCATAGGGGCAAAAAATGAGTTGGGAAAGTGCTTAATGGAACTTGACAAGGAAAGGATTGCGACTTATCTGGCAAGAAAGGAATGTGACTTCCTTATGAATGTTCCTGAAGCCAGTCATATGGGAGGCATATGGGAACGTCAGATACGGACGACCAGAAGCGTGATGAGCTCTGTCCTTGCTCAGGCGAAAGGACGACTGGATGACTCCTCATTAAGAACGTTCTTCTACGAGGCCATGTTTATAGTCAACAGTCGTCCGCTGACAACGAACACCCTCGCTGATCCCAAAAGCACTGAACCCTTGACACCCAATCATTTGCTTACTATGAAGCCTTCGGCACCCCTTCCACCTCCTGGGAAGTTCGTTCAAGAGGATCTGTATGCAAGGAAACGATGGCGCAAAGTGCAGTATCTCTCAGAACAGTTCTGGAGCAGGTGGCGCCGAGAATACTTAACCAACATCAGCCTTCGTCAGCAGTGGCATACAACCAGACGGAACGTGCAGGTTGGAGATGTAGTCATTGTTAAGGATGAAAACACTCCTAGAAATGAATGGCCACTAGCTAAGGTTGTTGAGGCACAGGAAGATGATGATGGTCTTGTACGAAAGGTGAAAATACAAGTAGGCCAAAGTAGGTTAGGACCAAAGGGTGAGCGCTTAACTCAGCCTTCATTTCTTGAGCGTCCAGTCCAGAAATTAGTTGTGTTAGTTGAACATCATTCAACATAGCTCGGCATTAACGTAAATGAAAAGAGCCAGTCACCTAATACAACAGCCATTGATAGCTTGAGTTTGAAGGTATTGAAAAATTACAAGTTTATTTCTTTCAATATAGTGAAGTACATCTTTGTAATTTTTGGTGGCAGTGTAGCGAATGCAGTaatataagcatttattttgtgtgaatttatttatttattttattttcttatttgatgtacattttatatttgtacatttcttgattataatgtgtatatttcagaaaattgtttaattaataacattGTCTGACCACGTCAGCAGTTCATCAGTTGGTCACATGGTGCACTTgggtaaaaaaattaagtttcgTTTTTAGTCAGTCGGTGAGTGCAAGGAGTCGAAAAGGACAAAGGGCTGTGAAATAGGACAAAATGGACTTCTAGCAATGCCTAACCTTCTGGTTGGAGGTGCACACGTGTTCACGGTGGTCTTGGGCGTTGTAAGGCAGAACCTACCTGTAATAAAACGTTTGAACCATCAGTCGGAGTGCGGCACTTTTATCAACCAGTTAAGAAAAAGTTGGGAGCAGC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106934266

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679698.1 True 4570 mRNA 0.45 2 18496094 18500819

Neighbor

gene id symbol gene type direction distance location
chka chka,LOC108424340,LOC107738676,LOC107726368,LOC107694945,LOC107583738 coding upstream 4568 18472936 ~ 18491526 (+)
kmt5b kmt5b,LOC107738677,LOC107694947,LOC107596936,LOC107583742,LOC108264420,LOC107726382,LOC107672243 coding upstream 27815 18462098 ~ 18468279 (+)
arpin arpin coding upstream 60979 18415527 ~ 18435115 (+)
LOC103028633 NA coding upstream 230291 18261165 ~ 18265803 (+)
cftr cftr,LOC107738689,LOC107583749,LOC107596947,LOC107708216 coding upstream 331370 18134717 ~ 18164724 (+)
ranbp10 ranbp10,LOC107583731,LOC107733562 coding downstream 261866 18762685 ~ 18813328 (+)
ripor1 fam65a coding downstream 377316 18878135 ~ 18980992 (+)
ctcf ctcf,LOC107726208,LOC107583725,LOC107596920 coding downstream 482783 18983602 ~ 18991711 (+)
carmil2 carmil2,LOC107694932,LOC107733559 coding downstream 496234 18997053 ~ 19065156 (+)
cfdp1 LOC105419833 coding downstream 575263 19076082 ~ 19111677 (+)
G159274 NA non-coding upstream 67668 18428155 ~ 18428426 (+)
LOC111194744 NA non-coding upstream 82144 18413361 ~ 18413950 (+)
G159272 NA non-coding upstream 84158 18411312 ~ 18411936 (+)
G159184 asz1 non-coding upstream 367665 18114005 ~ 18128429 (+)
G159182 NA non-coding upstream 386555 18108163 ~ 18109539 (+)
G159298 NA non-coding downstream 7592 18508411 ~ 18508695 (+)
G159344 NA non-coding downstream 112345 18613164 ~ 18615494 (+)
G159347 NA non-coding downstream 129651 18630470 ~ 18630853 (+)
G159349 NA non-coding downstream 151631 18652450 ~ 18652676 (+)
G159350 LOC108438999,LOC107726468,LOC107694939,LOC107733575,LOC107596927 non-coding downstream 151938 18652757 ~ 18657402 (+)
rapsn rapsn other upstream 510190 17971096 ~ 17985904 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other upstream 1123888 17327100 ~ 17372206 (+)
zwilch zwilch other upstream 1306843 17177675 ~ 17189251 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other upstream 1323866 17101612 ~ 17172228 (+)
LOC103031606 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 other upstream 1697694 16779506 ~ 16798400 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other downstream 24709 18525528 ~ 18576437 (+)
G159666 NA other downstream 1684697 20185516 ~ 20186919 (+)
G159728 NA other downstream 2235779 20736598 ~ 20737049 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other downstream 2508483 21009302 ~ 21011794 (+)
fam174b NA other downstream 2559837 21060656 ~ 21074573 (+)

Expression


Co-expression Network