carmil2 (carmil2,LOC107694932,LOC107733559)


Basic Information

Item Value
gene id carmil2
gene name carmil2,LOC107694932,LOC107733559
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 18997053 ~ 19065156 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679717.1
CCTGTGTTAGCCTGTCTTGCACCCTGTTCCTGTAGACTGAGACAGACACAGTAGGTACAATGGCGTCCCAGGCAGGGGTTCCCTTCTGTCTGAAAGATACCATTATTCAGCTGTTGAAACCCCAAAGGGTCCAGTTTATGACCAGTGTGCAACTCAACCAGTCCAGGGACCGGTCAGAAACCAGAATCCTCGTTATGACTCAGTGGAGAGCTCATATGTTCCACAGCAAGCAGCCAGTGAAGGTGGAAAGTTCCTTCAACTATCTGGAGATTCATGCCATCTTCATCGAGAGTCTTGAGCAGGTGAATAttgaaacagacagacaggtttaTTCTCTCACATTGAGGTCAGTGGAAGACCTGGAGGCCATGGTCAGTCATGTGACAGCTTCCCTCAAGAAAATCTTTCCAGATTCGTCACCAGGGAAGCTGTTGAAGAAGGTTTCTCCTGAGTTCCAGGACAGGCTGTTGTCGCTTGCCTCCAGAGTCGAGGAGCAGCTAAATGGATTTTATGGACCGTGTGGGGGTTTCTCAGACACCTATGCAGCGCTGTGTGATTACAATGAGTTCCCATGTCGTGATGAAGTCCACTGGGACGTGCACAATATTTACCATGTTCAGAACTGTCGAGATTTCAACATTGTGGACTTCAGTCATTTAGAAAGCAGAGATTTGGCATTGGCTGTTGGCGCTCTTTCCTTCAACCAGTGGTTCACCAAAATCTGCAGCAAGGACTTCAAATTGACACTAGACGTGCAGGAGCAGGTGATCTACCTCATTAACCGATCCACGGCTCTGCAGGAGTTGTGCCTGGAGGCAGGCGGACTCAAAGCGGATTTTGCTATAAAGCTGGCCGGAGCTCTTCATGAACAGCGTGCCTCTGCTCTCCATGTCATCAATCTGTCTGCCAACCCTATAGAGGATAAAGgtgtAATATCTCTCAGTCAGAGTTTGTCGCAACTACCACATAGTCTCAGTCGGCTTTATCTCTCCaagatctctctctcctcaaaAGGATTGGGCAGTGTAGCTCATATGCTCCTCCAGACCAaatctctctccacctcactgaCCCACCTGGACCTGAGTGGAAATGCAGGATGCTTGGCTACAGAGGAAGCTTCGAGCTTCTTAAAATTCCTGTCTTCTCCCAACGCTGTGATTCACCTGAACCTTAGTGCGACTGACTGTCCTCTAGATGCTctctttgtctctctctgttatgGATGCTACACTAGTTTATCCTACCTCAACCTCTCCAGAAACGTCTTCTCCCATAGGAAGGTGCGGGAGGTGACACGCAGTGTGAGAGAGTTCTTTACTAAAAGCATGGAGCTGAAGTACGTGGGGCTGGCCAACACCAAACTACCTCCTGAGGCCCTCAGGTTATTGCTCCAGGGTCTGGCCACTAACAGTCACCTCTCCGAGCTGGAGCTGGACATCAGCAGCTGTGAGCTGAGGTCCAGTGGAGCTCAGGTAATTCAAGAGCACATCTTTGAGACCAAGGCCATAGGGAGCTTGAATCTGTCTGACAATGGTTTTGAGAATGACATGGTTACTCTTGTGCTGTCCATTGGGCGGAGTAAATCTATACGACACCTGGCCATCGGACGCAACTTCCCGAGGAAATCTAGAGCTCTGACAGATGTTCTGCACAGAATCGTGCACATGATTCAGGAAGAAGATTGTCCTTTGGAGTCTCTATCTGTGTGTGATTCCAAGCTAAATACGGGCACCACCATCCTCATAAACAGCCTGGGTAGTAGCTCTGCCCTCTCCAAGATTGACATCAGTGGGAACTGCATCGGAGACACAGGCGCCAAGATGCTAGCCAAGGTCCTCACAATCAACACCAAGCTCAGAACTCTGGTCTGGGACCGAAATAATGTGACTGCTGTGGGTTTTATGGATGTGGCCAATGCTCTGGAGAGGAACAACACACTACAACACATGTCCATCCCGATGAGTGATATGGCACAGGCCTACCGTTCCAACCCAGAGAAAACGGAGGAGGCAATGCAGAAGATTCAGGAGTGCTTACGGAGGAATAGTCAGAGGACATGCACTTCACCTGATGAAATGCTGAGTCTGCAGCAGAGTCTGAAAACCAGCCACTCCgaacagCAAGTACAGCACGTCTGTCAGAAGCTTCAAGAGACCATGAGGCCTCTTTCTTGCTACAACATCCAGGAAGTTCAGAGTGACATCCTGTCTGCAGAAGAGGCTCTTCAGCACGCCAGAATAGCCATTAAATCTTTACACAGAATTTATGAGTTGGGGAGGTCACCCTCTGCTGGTGATACAGTGCATCACATCCTGGCTGATGTAGCCAAAGCCATAAGCAGTGAACTGACTGAAGAAATCcagGAACAGGCACAGGCGATGCTGCAGTTTGCCCAGGCATCCTGCCCCCGAGTTGTCCAGAGAATGAGTGTCAGCGAGCAGCTGGCCAACCGCGTTGCCAGTAAAACCCAACAAGCCACACGGTTCATCCACAGCACAGTGAAGGAGGCAGAGAACAGCATCAGGGAAAAGCTCAgtGAACTGAAACTGTCAGTCAGCGTCTCTCTGGTGGAGAGTATCATTGCGGAAGTTCTGCAGGACTTGTCAGTGGCTCAGCAGAAACTGGATAAGCATTTAAAGGAGTACTCCCAGCCCATCAGCAGCAAGACCAACGTGCCCCAGCTAAGAGTGGTGGAGAATGAGTTCCCTACTGATGAGTATGTACCCATCATCTGGAGGAATAGCTTCCATACCCGGAGTATTCGGCCGGCTCCTTCTGTTAAAAGTCTGTTGGAAGAGGAAGGCGAGCAGCAGGCTCGGGCGAGTGCGCATTCCCAGCAGGAGGCGGAGGAAcgtgagagagacagggagcgagcaagggagagagagggaggaggaggaggaggagcaggaggaggagggactCAGGGCTCCAGGCTGACAGCTGAGGAGAGGGGGCGGCGCTTGTCGTCCTCCTCTTCGTTGGCGACCAGCCTGTCCGTCACGGCAGCCGTAGGCGTACCCAGGACCTCAGGCCCCACCCGGCCAGGGAGGTGGGCGGAACCTGCCGGCTCTGGCTGTGGAGCGGCGTCGGGCAGCAGCATCACAGAGCCCCGGCGTCCGGAGCCCGTGTCTACTCAGCCCCCTATGGACCTGCCCATCGAAGGCCAAACGCTGAGGCACTACACCCGCACCCGGCCCAGACCCAACCGCCGCAACAGGCAGCCACCCAGCAAGCCTCAGgagcaGGCAGCTGAGAGTGAGAATGAAGCCAATGAGAATATGGGGAGGGTGGACGAGGGCGTAGAGGAGTTCTTCACCAAGAAGATCATCCCTGATGACCCCCTAAAGCACCAGAGGGAGCAGCCCCTCAATAAAGCACAGCCTGCAGAGCCCACGTGTGTCACGACCACCCCtcccaccaccactaccaccactaccacGACCCCTACCCCCTCCTCAGCCCCCTCCAAAAACATTAAGAAGAAGTTTGGCGACTTTTTTGCCTTTAAGAAGGTCCGTGCTGGTCGAGGAGCCAAGGGCGAGGGTGCCCCGGAGGGAAAGGTCAAAAAGACTTCAATAGCAGACCTCATCCGACCCCTCCGGGAGGCGGCACGGGCCGAGAAAGAGCgcgagaaggaaagagagagggagaaggagagagaacgagagaaagaaaaagagaaggagaaaacagAGGAGGATATCATCGTCAAAGCACCCACCATTGCTCCCACTCCCACCGTCACAGATTCGGCTCTCGCTGCACCAGCCGTAGACGAGAAAATGGCACCTAGAGCTCCTTCACCTCTCCTCATGCCCACCCCTGCCCCGGCAGCCGCTCCTGCTCCCGCTTCCACCCCCACCCCTCCTGCCTCCTCGCCTGCCAAAACTGAAGAGGTCCCAGCATTGTCCCCTGCTGCACCCACCTCCCCCACCAAAACTCCCAGTCCCGTAGCAGCAGTGTCACCCTCGGAGCGGGAGAAGAGTCGGACGCTGGAGAAGAGCCGAACCCCCGACGGGGAGAGGAGGCCCAAGCCTACACGTCGTTCTCTCAGAGAGGGCAAGTCACAGTCCCTCATCCTGCTCACAGGGCTGGAGCCAGAACAGGACACTGCAGCCATGCAGGCCAAGAAGCACGCGTCCGAAAGCTCCTCCAGTTTTGAACAGCGGCTTCATGTTATGCTTCACCGCATGGGCGTTACCAAGACACCTCCGTCCGACTCCAAAAAGagccagAGCAAAGACGAGGAGCTGAGGAAAGCCAACTCAGAAGGGGCAATACTGGACAGTAAACCAGAACCTCCACCCACCTATATGAAGCCTCGCACAATGTCCACCTCTTCAGACACCAGGCGCCCAGTGAGAGGAAGCAATATGGAACCCCTCCGCACAGATCGCCCACCGCTTCCAGAACGACCCCTGGGCCCTTTGCCTCCCAAACCAGCCCTTAAACCCACCCTGATCCCTCCCGGTGAGCCCCCTGCAGCCTGCCGGaccatcacacctgcacccaGGCAGCCCAGTCCATCTCCGGAACCCCAGCCGGCAGCGGTGGAGGCGGGACCACCAACCCAGGCTCAGCCAATAGAGCCTCCAATACCCTCACCCCGCAAAGAACCACCACCTGCCCCATCACCCCGCAGGGTACTTAGCACAGACTCCCgtgagagagcagagagagcacAGTCCGTCACTGAAGAAACCCTCCCTAAACCACGGCCCCGCATGAAGCCCTCGCCTCAGCGTCGCGCAGTCTCTGTTCATGAAGACTCCCTACTCCAGCACGCTGCCCTACTTGACCCTGAGGAGCTGAAAGCTGCATTACCACGGCTGCAGAGGTCACCGGTGCGGAAGCGGGTGAACCTGGGGGAGCTGGAGCCCTGCTCAGAGGATTTACCCGAGAGTGAAGAAGCTAAGACTGATGGAAGGGGAGATCACACTGAACAGGCCGGTGAAACAGACAGCACCGCGGTCAGCGAGAGCCCAGCAGAAGCCACTGGGAGCACGACCAGGGCAGGGGCTGAAACTGGACCTGAAGAAGAGGACAGCAAGCAGGAGCGGGACGAGATGACATCAGATCAAGATCAGCAGCACACAGCGCAGGGAGAAACATCAGACCAAAGAACTGAAACCCCCTCACCTGAGACAAACATGGACTGACCCCCTGCGCGCAATCTATTTTCTATCATGTCTACCTTTGCCTTGCACGTCAGATTATGTACAAAAGAATGAATTATGAACAAATgcgttttaaaaaaacaaaagagagagagcaaatcgATACATATACttgttaataattattaaaaagtgaATTCTGTTGTGTCATCAA

Function

symbol description
carmil2 Predicted to act upstream of or within cell migration and maintenance of cell polarity. Predicted to be located in cytoplasm and plasma membrane. Is expressed in central nervous system; eye; and pronephric duct. Human ortholog(s) of this gene implicated in immunodeficiency 58. Orthologous to human CARMIL2 (capping protein regulator and myosin 1 linker 2).

NR:

description
capping protein, Arp2/3 and myosin-I linker protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679717.1 True 5337 mRNA 0.54 41 18997053 19065156

Neighbor

gene id symbol gene type direction distance location
ctcf ctcf,LOC107726208,LOC107583725,LOC107596920 coding upstream 5342 18983602 ~ 18991711 (+)
ripor1 fam65a coding upstream 16061 18878135 ~ 18980992 (+)
ranbp10 ranbp10,LOC107583731,LOC107733562 coding upstream 183725 18762685 ~ 18813328 (+)
LOC111194773 LOC106934266,LOC108233135 coding upstream 496234 18496094 ~ 18500819 (+)
chka chka,LOC108424340,LOC107738676,LOC107726368,LOC107694945,LOC107583738 coding upstream 505527 18472936 ~ 18491526 (+)
cfdp1 LOC105419833 coding downstream 10926 19076082 ~ 19111677 (+)
bcar1 bcar1,LOC107596915,LOC107583722,LOC107701029 coding downstream 57763 19122919 ~ 19236859 (+)
nudt21 nudt21,LOC107660760,LOC107690386 coding downstream 188201 19253357 ~ 19258034 (+)
gnao1 gnao1,gnao1a,LOC108264367,LOC107715606,LOC107660763,LOC102196435,LOC100693875,LOC108249535 coding downstream 252217 19317373 ~ 19433125 (+)
cbfb cbfb,LOC107715607,LOC107715210 coding downstream 386619 19451775 ~ 19496575 (+)
G159398 NA non-coding upstream 186983 18786541 ~ 18810070 (+)
G159389 nutf2 non-coding upstream 244899 18738284 ~ 18752154 (+)
G159388 NA non-coding upstream 260380 18736402 ~ 18736673 (+)
G159365 edc4 non-coding upstream 262239 18732483 ~ 18734814 (+)
G159363 NA non-coding upstream 269016 18727015 ~ 18728037 (+)
G159480 NA non-coding downstream 194140 19259296 ~ 19262326 (+)
G159579 NA non-coding downstream 498593 19563749 ~ 19563966 (+)
G159583 NA non-coding downstream 520252 19585408 ~ 19585837 (+)
G159585 NA non-coding downstream 521292 19586448 ~ 19586972 (+)
LOC103038177 NA non-coding downstream 542260 19607416 ~ 19665139 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other upstream 420616 18525528 ~ 18576437 (+)
rapsn rapsn other upstream 1011149 17971096 ~ 17985904 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other upstream 1624847 17327100 ~ 17372206 (+)
zwilch zwilch other upstream 1807802 17177675 ~ 17189251 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other upstream 1824825 17101612 ~ 17172228 (+)
G159666 NA other downstream 1120360 20185516 ~ 20186919 (+)
G159728 NA other downstream 1671442 20736598 ~ 20737049 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other downstream 1944146 21009302 ~ 21011794 (+)
fam174b NA other downstream 1995500 21060656 ~ 21074573 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other downstream 3082688 22147844 ~ 22152785 (+)

Expression


Co-expression Network