LOC103025942


Basic Information

Item Value
gene id LOC103025942
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 19775339 ~ 19847558 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679733.1
acacacaccccaaaccAGCTTAATGAGACAGACAGAAGCTGAAGCACAGGAGGGACTGGTCATGACTTGCTTAAGGAAACTATAAAGTAGTGTTTTTACCTGGAAATAGaaatagagtaagagaaaaaaaaacctcaactGTTGTTAAAATGGATCCCAAGAAGAATGTTTTATCCAAATTGCGAGATTTTAAACTCTTTaatgtgaagaagaagaagaagactccCTTGAAATACAGGCGGAGTATCTCGGTGCCTGATCTCAGCAGGTCATCACCAGTGATGGCGAACAGATTTGCCCAGATTAAAGCCCCCGACTCCACCGCCGACCTGAGCTTTATCGAAGAAACCTCCAGTGTGGCTTATTCTGATAACCTCTCCGTCACAGACGTGGCTTTTTCAGCCTGgcccacagaccagctccaatgTCCAGACACACCATCCTCAACCAGTTCCAGAGAGCGGCACACCGCACCAGACACACAACCTCTAACCCAGTTACTGCCCCGAAACACTTCTGCAGACAAAGCTTGTTTAATTAACCGATCCCCCTTTCCATCTACACCATCTGCAACCAAGGTTCTGCATCAGTTCACCTTTCCAGACACACCGTCATCAGCCAGGCATACTGTGTGGGACGTGCCACCAACATCAGACTCACCAGCTGTTGTGGATAACCCTACCAATAATGACATGCCTGATAAGAAAGCAGAAAAAGGAGACAGAAAAACCAAATGGTACATCGACGACCAGGACAGTGATTCTGAATCTGACGAGGAATGTTCTGAGCAGGAAATAACAGCAGCGATAGATCTCTTATCTCCAGGAAGTACAGACATGTGCGTTAGTGGATCAGCTGAGGATATAGATGAAGTTCCAAATGAGAGCAGTGACTACGACACCAGCGTctcaggaggagaaaaaaagGTCCACTATGTCCTCACCATCAACTTAAAGGAAGGAAAGAACCTGGTGATCAGAGATCGCACTGGTACCAGTGACCCCTTCGTCAAATTCAAAGTAGACGGCAAGACCGTGTACAAAAGCAAAGTCGTGCACAGAAACTTGAACCCCACCTGGAATGAGTCCTTCTCTTTCCCCATCAGAGACCTGGAGCAGAGCATTTCAGTTCAGGTGTATGACCGCGACCTGAGGTCACATGACTTCATGGGTTCCAACACGATCAGTTTAAGTAAACTGGAGCTGGAAAAAACATGTGAGATAATATTGCCTTTAGAAGATACTAACAGTCCAGAGAACGACATGGGGGTGATTGTCTTAGACGCCTGCGTGGCTGTCTCTGAGGAGCCCGCTAAACGAACTAAGTGGCCATTGAAGAGGAAAGGAAGCTTTAATAAGGGTCAGCCACAGCAGGCACGAGGAGCTGCCACACAGAAGTGCCAGCTTTGGAGCGAAGTGTACACGGTGGTGCTGGTAGAGGGGCAGGACATGCCTGACGGTGGGGAGGGCGACATGTACGTCCTTTTCAGCCTGGGTGAGCAGAGATATCGCAGCAAGAATCTGTGCATTAAGGCCAACCCGCAGTGGAGGGAGAGGTTCGACTTCAACCGTTTTGATGATGGCCAATCAGATAAGTTGATGGTGGAGATTTTCTGCAAGAGGGGCCGAAAACGTGAAGAACGCTGGGGAATGCAAGAATATGACCTTTCAGAACTACACCTCAACAAGAagcactcatacacacacacaatgggtGCAGGAAAGGGCCGGCTGGTGTTCTTGGTCACTCGAACCCCCTGCCCCGGAGCGTCCATCTCTGACCTGCGATCTGCTTTATCAGACATCAGTGAGGAGACGCTGCAGCAATACAGTCTGACGAACACACTGCTGAACCTACAGGATGTTGGGTACCTCCAGGTCAAGGTTGTGAGGGCCACAGACCTTTCCTCCACAGATCTGAATgGTAAAAGTGACCCATTTTGTATGCTGGAGCTTGGAAACAGCAAGCTGCAAACTCAAACCATGTACAAGACCCTCAATCCAGAATGGAGAACAATGCTTACATTTCCAATTAGGGACATCCATGAGGTCTTGGAGCTGAGCGTTTTTGGCGAAGATGGGGACAAATCAGGAAACTTCCTGGGAAAAGTTGCTATTCCTTTGCTGACAGTCTCCAATGGACAGCAGATAACCAGCCTTCTAAAAAAAGAGGATTTGACGGGGCCATCCAAAGGGAGCATCACTCTGGAGATGAATGTTGTCTACAACCCGGTCAGAGCTGCCATTAGAACTTTCAAGCCCAAAGAAAAGAAGTTTGTGGAGGACAACCCAAAGTTCAATAAAAAGCTGTTAGCGCGCAACATTTACCGTGTGAGGAGGATCAGCATGGCTGTGCTGTATACACTGCAGTACATTAATAGCTGCTTTCAGTGGGAGAGCACTCAGAGGAGCGTCACCGCCTTCCTGatcttTGTAGTGATGGTGTGCCACTTCGAGCTCTTCATGCTGcctcttttcctcctcctgctgATTGGCTGGAACTACTTTCACAACACCCCGGGCGCGGGCAGCCACAGTCAGGACCTGGAGAGCATGTCCGTGGCGGAGGACGAAGACGAGGATGAAAAGGAATCGGAGAAAAGAGGCCTGATGGAGAAAATCCATATGGTTCAAGAAATTGTGCTCACGGTCCAGAACGTTCTAGATGAAGTAGCGTGCATAGGAGAAAGAGTAAAGAAcACATTCAACTGGTCAGTGCCCTTCCTGTCCTTCCTGGCCTCTGCAGTCCTGTTCACTGCTACTGCTGCACTCTACTACATCCCTTTCCGCTACATAGTCTTATTATGGGGTGTTCAAAAATTCAGCAAGAAGCTCATCTACCCGAATGCAATCGACAATAACGAACTACTGGATTTCCTCAAGAGGGTCCCGTCTGATGTTCAAAAGGTGCAGTACAGCGAGCTGAGAACGGCTGGCACCCAGAGCGTGCAGAAGAAGAAGCGCTAGCGCCCAGAGCCCCAGCAGAGACTTTCGGGATGAAAGGCGGCGGTTGAAATTGGTGCTCTCTTGTTCAGGCCAGACTGCCCCCCTCTCACTTCCAGGGGCAGTCAAGTGGAGTCCCCTACCTCCTCCTCTGCCCCCATATTGGACCTCGTCTACCCCTTGGGGTGAGGCTGCTGCCAGCCTTTCCCCTGGCTCagagtgtgtatgtttgtgtgtgtgtgcttctcAGTGACTTGTAGGGCAACACAAGGATCTGTTACACATTCacagactgaaacaaacaaaccaaaaatccCACACACTGCTCGTGGTATGTTAAAGCTGCAAGCTTCTGACAAACAACATTCTTTGTTAACATTTGGCCATAGCTGCTaagcaacaattttttttaaacacataaatagaattGTGTGTAGTTAtatgtgtgtacagtatttTCTAATATAGATTATCTCCACATCTATCCAGATACTTTTATAAGCAGATGTTGCTgtcttctgattttttttaaaatatttccatCCATACAGAGACAAAAGCGATTGCATAAGAATGCTAGTATGAAAGGAGATCTCTCATTAAGAAAGTTAtcagcacacaaacaaatatcATAGGTGTAATCCCAAATTACACTAGGCAATGGATTCTAAATCTAAGAtgaacattatatatgctcATATGTAgacatatttattatacagtatatatgtagaAAGTATTGTACTTCTTTTCTGGCCTGTGTAATCAGGTTGAAGCACTTACAAATGTTAGTCAAATTATTGATATGTGACAATGTAACCATTTTATTTGACATAATAGGGGTAAGTGAGGCACAAACATTGGGAATGAAGTTTACATACATGaagttttaataaaagtaacaaaGACAAAAGACATAAGATATAAATACGTTGTGCCATAACAAGTTAAATTGTTacgataagttttttttatatatctcagTTATGTTTTTTACTCatctgctttattattttattcacataCACTATTTACTGTGAGAGATATCCAGGCTTatagatatattatatttatttatatatataaataaatggtgGGAAACACAGTAACAGGTTAATTGGGTAAACTTTTCTCAATGTAAATACAGTAACTACATTCAGACTGAGTATAAATTACTGCTCAAATTCTTGTTTGGAAAGTTTTTTTACACTTTCATTGAATATTATTTATCAGTGTGACATCAACATATCTATGTATGAGTTTTTTGTTCATGTTTAAtcgtgttttattttatttattgtatttttagtaaTGGGAAAGCCTCTGGCGATGTTTCcatatgtttgtttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679733.1 True 4292 mRNA 0.44 24 19775339 19847558

Neighbor

gene id symbol gene type direction distance location
mef2a mef2a,LOC107715609,LOC107690382,LOC107715212 coding upstream 3212 19666624 ~ 19772127 (+)
LOC111194775 NA coding upstream 254786 19515607 ~ 19520553 (+)
fan1 NA coding upstream 263114 19500023 ~ 19512225 (+)
cbfb cbfb,LOC107715607,LOC107715210 coding upstream 278764 19451775 ~ 19496575 (+)
gnao1 gnao1,gnao1a,LOC108264367,LOC107715606,LOC107660763,LOC102196435,LOC100693875,LOC108249535 coding upstream 342214 19317373 ~ 19433125 (+)
arrdc4 NA coding downstream 818686 20666244 ~ 20674227 (+)
lysmd4 NA coding downstream 898010 20745568 ~ 20751796 (+)
rgma rgma,LOC107715216,LOC107690376,LOC107715612,LOC107693037 coding downstream 1139066 20986624 ~ 21007290 (+)
LOC103034607 si:dkeyp-59c12.1,LOC108431221,LOC105905574,LOC107715203 coding downstream 1404146 21251704 ~ 21255960 (+)
LOC103034933 LOC108431189,LOC101061116 coding downstream 1507561 21355119 ~ 21371584 (+)
LOC103038177 NA non-coding upstream 110200 19607416 ~ 19665139 (+)
G159588 NA non-coding upstream 144667 19627846 ~ 19630672 (+)
G159585 NA non-coding upstream 188367 19586448 ~ 19586972 (+)
G159583 NA non-coding upstream 189502 19585408 ~ 19585837 (+)
G159579 NA non-coding upstream 211373 19563749 ~ 19563966 (+)
LOC111194777 NA non-coding downstream 298144 20145702 ~ 20162076 (+)
G159663 NA non-coding downstream 358506 20206064 ~ 20207105 (+)
G159662 NA non-coding downstream 359669 20207227 ~ 20213526 (+)
G159677 NA non-coding downstream 408949 20256507 ~ 20257213 (+)
G159705 NA non-coding downstream 600900 20448458 ~ 20448783 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other upstream 1198902 18525528 ~ 18576437 (+)
rapsn rapsn other upstream 1789435 17971096 ~ 17985904 (+)
smad6 smad6,smad6b,LOC107583766,LOC107672304,LOC107596967,LOC107738716,LOC107686299 other upstream 2403133 17327100 ~ 17372206 (+)
zwilch zwilch other upstream 2586088 17177675 ~ 17189251 (+)
map2k1 map2k1,LOC107596971,LOC107583767,LOC107686295 other upstream 2603111 17101612 ~ 17172228 (+)
G159666 NA other downstream 337958 20185516 ~ 20186919 (+)
G159728 NA other downstream 889040 20736598 ~ 20737049 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other downstream 1161744 21009302 ~ 21011794 (+)
fam174b NA other downstream 1213098 21060656 ~ 21074573 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other downstream 2300286 22147844 ~ 22152785 (+)

Expression


Co-expression Network