LOC103025486 (fli1,LOC107692484,LOC106612965)


Basic Information

Item Value
gene id LOC103025486
gene name fli1,LOC107692484,LOC106612965
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 22000660 ~ 22061810 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679743.1
AAATAACTCACTGTCATTCATGGTGACGGACTTTCTCATAGACGGGACTAATTATTTTATCAGGAGGGAAGAACTCGTTAAAGCGCGCGATTCGGCGAGTGACAGGGGCCGTAAAGTGCAAGTTGCCCTTTTTCCGGCTCTTTGTCCCATGACCATGTTTCAGACTGTCCCAGACACTTCGTCTTACGTCAAGGTAAGACAACAACGCCATTTTCCACAGGAGGCGCTATCAGTGGTGAGTGAAGACCAGTCTCTTTTCGAGCCTCCTTACGCTGCTGCCGCCCCTCTGCCCAAGACGGACATGACGGCGTCCGGCGCGCAGGATTACGGACAGCAGCACAAGATCAACCCCATCCCCTCACAGCAGGAGTGGATCAACCAGCCCGTCCGGGTCAACGTGAAGCGGGAATACGACCACCTGAACGGAACCAGAGAGTCCCCTGTGGACTGCAGTGTGGGCAAATGCAATAAACTGGGCAGCTCTGACGCGTCACAGATGGGTTACGGGGGATACATGGACGAGAAGAACGGGCCACCCCCCAACATGACCACCAATGAGAGGAGAGTAATCGTCCCCGCAGACCCATCCCTGTGGTCTCCTGACCACGTGCAGCAGTGGCTAGACTGGGCCGTGAAGGAGTACGGCCTGTTGGAGATtaacacagcaatgttccacAACACTGACGGAAAGGAACTGTGCAAGATGAACAAGGAGGACTTCCTGAGACTCACCAGCGTCTACAATGCAGAGGTCCTGCTCTCACATCTCAATTACCTCAGGGAAAGTAGCTCATCACTATCGTATAATGCACCATCTCACACTGACCAGTCTCCTCGTCTGCCCGCCAAAGAAGaTCCTTCATATGATGCTGTAAGGAGGACAGGCTGGTCGAACAATATGCACAGTGGCAAAGGCTCCCCGACGGTCGTCTCTCAGAACGTGTCCAAGAGCACTGAACAGAGCCGGCCGCAGCCAGATCCATATCAGATTCTCGGGCCCACAAGCAGTCGACTTGCCAACCCAGGCTCAGGTCAGATCCAGCTGTGGCAGTTCCTGTTGGAGCTCCTGTCGGACAGTGCCAACGCAGGCTGCATCACATGGGAAGGCACCAACGGCGAGTTCAAGATGACGGACCCGGACGAGGTGGCGCGGCGCTGGGGCGAGCGCAAGAGCAAACCCAACATGAACTACGACAAGCTGAGCCGCGCGCTGCGCTACTACTACGACAAGAACATCATGACCAAGGTGCACGGCAAGCGCTACGCCTACAAGTTCGACTTCCACGGCATCGCACAGGCCCTGCAGCCGCACCCCACGGAGTCAACCATGTACAAGTACCCCTCTGACCTGGCCTACGTGCCTTCATACCACGCGCACCAGCAGAAGGTCAACTTCGTGTCGCCACACCCGCCCTCCATGCCCGTCACCTCCTCCAACTTCTTCGCCACTAACCCCTACTGGAGCTCGCCTACGGGGGGCATTTACCCCAGCGCAAGCGTACCCCGCCATCCCAACTCCCACGTGCCCTCCCACCTGGGCAGTTACTACTAAAGCCAACTACCCCTCAGCCCCTTGCTTTCCAACTCACGTGCCATCCCCAAGCTGCACtcggaaataaagaaaaagaagtaaaaagataaaaggAATGGAAAGGAAAGGAGAAGAATGCTGGAAAGTGGGAAGTTTTTTCTGCTTCTCTTCTGATGGAATACATTTGCAAAATGAAGGAATTAATCATAGAAGGGAACTAAAAAAAGAACCAAGAAAAACTGGATGAAGTCTCGATCCACTTCAAAATTGAGTACTACTTATTCACAGGACCAGTGACTGCttggttttgtgtgtttgttttgtctggagcgttttttttgtttcgtcATCAGTTTCTGTGGGTTTATGTACCTTTCGAATCCCGAACACAGGTTGAGGTTGGGCCAAAGCACCCTGTTCATACACTTAGACACCCAATATTAATGCTAAGCTTTACCTTTAttgaaattgatttaaaaacagaaacaagctGCTCTTTAACTCTAAAGCTGTTATGGCAGGGTTTCCAAATGTGAAAAATTCCCAGTCTTTTTTTCATATGAGCTTATTCTAAACCATGCTGGTATTGTAGCACAAAGATCATCACAAATTGACAGAGCGAGCGTCAATGTGaacgctctctctttctcgatGCTacttaacccataagagcctgGACCCAGTTTTATATCTTGATTTAAAATAGGTTTAAAgaagaaattctccaaaatgacctgagaTCAGTTATTTTTGCGTTGACTTCCATTGGGATTTACGTTTCCCAGAGTCTGTTGTCTGCTTGCACGGGCAAATCTAGCCAAAAGCAgtcggtcacaatcattaccacccactgcactgtctactgtgggaAGTAATGCCTTTTATGTCCCAATCCATTTGGCATCTACTATCAGGCCTTACAACTTATAAAGGTGCAAGCTTTCCCAAGTCGTCCCTTgagtttttaaaacagttcaCAAGACCAATTGACACATACAGAATGTATGGTACCATtggctcttatgggttaagaTGATCTCAAACTTTTGACATTCCAAAGTCCAAAGTTTatagaaaactattttttaaaactagtgtctggatgttggatgttgtcctctgttctctgtcTCCAAAATAGAGGATACAATCCCAAAACACAAAGAACCCCTGAAAAACTCAGGGGGAACTGGAATGTGCTACCATTCACCTCTGACTTGTCCTCCTAACTGGAATGCTGGAGCTTCAGCTATGGCTGGAAAAGGCGATTTAGTTTATCCAGGAGGTTTTATGTGTTACCATAGTGTGtgccataaataaaaaaaagaatgatcaGGAGTAAAGCCATTGCAGAACCACTTTCGACTCCTTAAATAACTTTTCAGTAGCCTTTTTTTAAGAGATCCTGTTTTTTATAAAAGAACCTATGTCTAAAAGTTCAAAGATTAGTCACCAGAAAAGGTGATTTTTAATGATGAACCAGTGTTCCTTTTCGTATCGATGACCATGTCAGTATTAATGTTGTTTTGCACTCGGCTGACCGTCTGAGTGACTGCACTTCCCTGCCTCTTCAGTGTTAAACCTCTAGAGTCCTAGAAGGACCATTATCTTCAGGACAGCACTGTCATTAATCATTTGATTGGCTGTTAAATTTGTCAATCAACCAGTTATCACAATCTCAGAAGAAAGATTCTTATAATAGGACTGATGTTGCTGATATTGTTACAGTGTACAGTGATTACAATGAAAGCTATAGGAATGAATCCAATGCtgaaagatgatgatgatgatgatgatgatgaaggccAACTGCTGAAGGCTTGTGGTTGATCttgtgaaaacagtaaaataacgGTTATATAACAggttatattacaatattttaagcCAAACTAGGGTTGCGCTGGTGTGAACTCTATTGCAAGTCTATTCACCTTATTTGGCCACGCCCACTTTTGAGAATATTTGTGTTGGAATTGTTTATAGTTGCATCATATTTAGAGTGAACGCAGTTCACATGAAGTAGCTATCCATCTAGGCTAACCCAACATTCCAACAGTGGATATTAAACAACTTCCAAATCACTAAACAAAAACTTTCTTAGcatagaaaaataaatcaaaatactgTTGGAACCAGTGTCTCCTTGGTCTTGAGACCCTAGAGACTTTTCTGAAGGGAGGGGATCATCATGCTGTTGGAATTCAGCTCCTCAGTACTGGCAGCACTCACGTAGTCccagaccatgatgctaccaccaccatgcttggcTGTAGATCACTTGATCGCAACTGTTAATTGTGAATGAGATCATGTGGTAACGTTTATCAAAATATAAACTACCCTTTTTTATTCAATCTATGGCTGCCTGGATACAGTGTTGTTTTTCTCAAATTCAAAATTTGGAGATgcattattactgtttattaataatctaTATTAAGAGATTATGGCAGTGGTGGTGTAGTGGTGGCTTTGTGGGTCTTGATGACCCAATACTTTGGCTGTCACTTTTAGGGGGGCTAGGTTATTGATGACACGATTGTAGGTTCAATTCCCAGCTTGTCTTGGATCTGCATTCACAGCTGAAGTTGTAacacaaatttaaaaaacaaagatgGCTGCCCAAATATTGGCAATGATGGAAAATAAGGTGAATAAGGCAGATAATTAAGTTTTTATCCACATCAGTACTTCTCAAAACTTCCGAAAGCATTCCAAAGTTGTTTTCCTCTCACCACTGTACCTCGCTCTTTTATATTTATccataattttgtgtttttacttaTGTATTTGTTGATATGCCAATGAAAATTCAGTCCACGTGAACTCATCTCACTCCTGTAACTCCTGTAGCCgtcatttcatttcttttctttttttaaatgtaatgcttTAACCCACACGTCACCGCTGTCTTTACGTCCTTACCTGAAGCTACTTAGATCACTGAACAGTTGAATGTGGACATGATGCAAAAGTACCTCTGTAAGataaatgagaaagaaaaaaagactttaaatgattttaacgagttaataagcagttaataaacaGTTAATAAACACTTATTAAACAGCAACACGGACGGTTGATACCAGAGAGATCCTCAGATTCGCGAACGCTGTGCGTTTGTCAGACCTATttgctattattttttaatcaacgGTCAACTAGGCATTAAAAGCATCTTACTGTATAAATTATGCAGAGTTATTTTCATATGTGACAGTATTAAAAGATCAAGAAAATTAATACGAGTTGACCTCGGTCAAAATGCAAACTTTTTAAAGCCGTGTCTGAAGGTCGTATGTACAGCATTAATGTTTTGTATCTGTACATTTGGGCAATAActttatgaatgtttttttttgtttgtttgtttattttttccatttatattTGTTTCTGTTGTGCTCTGTGCCTTTCCTCGGTGAGGtgaaatatatatgatattttgtatttttttattaatgatacCACAAAAGCCTTGTAGACAATCATTTGTCTTTGCAGACCACAATCTTTCATGACACTTTCGACAAGTGCGAAATGACAATGAAATGATCATTCCTCTCCTGCTAAAGATCCAAAGAGAGCTAAAGATCCAGGCTCAGATTCAGCGCCTCCACTCAATTCTCTTTAAcacagcattaaataaaaaaatgcaaaaaaaaacaccccatcATCTCTTTAAAGCATCACTATCTAATGAAGAAAATGTGCTATTTCATATATGCAATGTATTttggatattatatatatgaaaatatatatatatataattttgcaaTTAATCATTTTGTTACTATTGTTGTTTCTGCAATACATTATTACCTTTTGTAAAAAGGATTGTAGATaaaatgtgctaaaaaaaataaatgttttacattacaaA

Function

symbol description
fli1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Acts upstream of or within angiogenesis and positive regulation of DNA-binding transcription factor activity. Predicted to be active in nucleus. Is expressed in several structures, including angioblastic mesenchymal cell; cardiovascular system; hematopoietic system; mesoderm; and pharyngeal arch. Human ortholog(s) of this gene implicated in blood platelet disease and thrombocytopenia. Orthologous to human FLI1 (Fli-1 proto-oncogene, ETS transcription factor).

NR:

description
PREDICTED: Friend leukemia integration 1 transcription factor isoform X1

GO: NA

KEGG:

id description
K09436 FLI1; friend leukemia integration 1 transcription factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679743.1 True 5429 mRNA 0.42 11 22000660 22061810

Neighbor

gene id symbol gene type direction distance location
LOC103031832 NA coding upstream 300939 21631760 ~ 21699721 (+)
pex11a LOC108431222,LOC107714788,LOC107556261,LOC107690406,LOC107715221,LOC107691149 coding upstream 539281 21457356 ~ 21461379 (+)
LOC103034933 LOC108431189,LOC101061116 coding upstream 629076 21355119 ~ 21371584 (+)
LOC103034607 si:dkeyp-59c12.1,LOC108431221,LOC105905574,LOC107715203 coding upstream 744700 21251704 ~ 21255960 (+)
rgma rgma,LOC107715216,LOC107690376,LOC107715612,LOC107693037 coding upstream 993370 20986624 ~ 21007290 (+)
LOC103026111 LOC108434138 coding downstream 15668 22077478 ~ 22079758 (+)
LOC103026427 NA coding downstream 19384 22081194 ~ 22084499 (+)
LOC111194835 NA coding downstream 28753 22090563 ~ 22094253 (+)
LOC103027502 NA coding downstream 143347 22205157 ~ 22233055 (+)
itpkc itpkc,itpkcb,LOC107596863,LOC107758549 coding downstream 172482 22234292 ~ 22260071 (+)
G159904 NA non-coding upstream 81666 21918749 ~ 21918994 (+)
G159896 NA non-coding upstream 150119 21847617 ~ 21850541 (+)
G159891 NA non-coding upstream 247661 21752505 ~ 21752999 (+)
G159868 NA non-coding upstream 491827 21508595 ~ 21508833 (+)
G159864 NA non-coding upstream 508909 21491389 ~ 21491751 (+)
G159919 NA non-coding downstream 46265 22108075 ~ 22109190 (+)
G159925 NA non-coding downstream 64734 22126544 ~ 22127679 (+)
G159936 NA non-coding downstream 104111 22165921 ~ 22166376 (+)
G159939 NA non-coding downstream 116394 22178204 ~ 22178561 (+)
G159961 cunh19orf54 non-coding downstream 210887 22272697 ~ 22276949 (+)
fam174b NA other upstream 926087 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 988866 21009302 ~ 21011794 (+)
G159728 NA other upstream 1263611 20736598 ~ 20737049 (+)
G159666 NA other upstream 1813741 20185516 ~ 20186919 (+)
necab2 necab2,LOC107694920,LOC107672281,LOC106573751 other upstream 3424223 18525528 ~ 18576437 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other downstream 86034 22147844 ~ 22152785 (+)
G160134 NA other downstream 791602 22853412 ~ 22854081 (+)
G160306 NA other downstream 2057319 24119129 ~ 24119825 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 4262010 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 4555452 26617262 ~ 26755313 (+)

Expression


Co-expression Network