LOC103030816


Basic Information

Item Value
gene id LOC103030816
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 23060575 ~ 23094876 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679757.1
cattttgatgtgtcccTGTTTGGCATCGTTTTCCACATTCTGTATACTCTCTGAGCGCGAGGATGCCCCGGAGCTGCCTTTATCACGTGTTGTGGATTTTTCCGAGCCTGTGGGCCACAGTTTTTCTACATGATGGACTAAAAAGTTTGTCACAGTGTGCTGGGCTGTTAATGGATGAGGATAAGTACACATGCTGTGGAGGGACCATACACCAGGGAGCTCATCTGTCCTGCTGTGGAAACTCTGCCTACAACATCCTGAAGAGTTCCTGCTGCCTGAatgagTTAACGCTTGGCTTGAGCCAGTCTGTGTCCCGATGTTGCGGATCACATGCCTACAACCCTCTGAATCAGATTTGCTGTGGGGGACGTGTCCAAATCAGACACAGTGCTCAGACCAAATGCTGTGGTTCAGAGCCGTTTGAGGAGAGGACTCATCTTTGCTGTGGTCCTCTTTCTGGGAAGGTGCTATTACCCAGGAATACCAGTTGTGACCTGTGTTGTGGTACTGAACTGTACAACCCAGTGGAGCAGTGCTGCTGCATTGACCCACATGTCCATGTGATCCCCAGGAATCCCAACAACACTGAATGCTGTTCAAATCCAGGTATATTTTTTCAACTGCCGAGAAGGCGaagaCAATCTAGTGATATTTCTGAAGACCACAGAGTTCTCAACCAGCTTAGAAGCAAGAGAGTTCCAGGCTTATCTCAGTTTACGGATCTGTACTGTGGATCAGAACTGTATGACACAAACATCCATATTTGCTgttcagaaaagctgttctCAAACGAGTACGGCCTTGCACAGTGCTGTGGTGCAGAGGTGTACCAGCTGTCAGAAGTGGGAGCGCTGTGCTGTGATGGACAGCTGTATCGAGACCAGCCGGTCGATGCCATCTGTTCTGGTAAAGCCGCGTACTCTCCGCTCAGCTATACTGTATGTCGGCAACATGCTTACCTACCAACTGGCCAGCAGTGCTGTGGGAATAACACCTTTGACCCTGAAAAAGAGATCTGCTGCAATGAACACAGgCATAAAAGGGTAACGGCGGATATGACCTGCTGTGGTTCTCATGCTTACAGTCCCAGCAGCGGTAAACACAAGTGCTGCTCTGGTCACCTCCACGACCTCGCAAACAAAGAGGAGGTCGGATGCTGCGGCACTCTACTGCTGACCAATAAAACGGAGCAGCGCTGCTGCCACTCAACGGCAAAAACTCTGATCTACGATGCCCAGCCCGGACATTCCTGCTGTGGGCACCTGTATTACAGCCATTCCCTGTGGAGCTGCTGCGCCGGACGACTGATTCCCGAGCCAACAGAGAACAGGACTGGAACACAATCATCAGAAGATTTCACACTTAGAGCGCTGACGGATTATAACTTTTCTGATATCTGCGACCTGCCAGtgaTGTTGGGGAGGGTGAAAAGTGCAACAGTGAAGGACGATCAGCGCTTTGTTCTCCTAGCAAATCCTCTGAAGATTCAAGGGAATAAAGGTGCCGTAATAGTTCTTCAGGGAAACCCTTTTGTAGTCGGCCCCCTGGCCCACTGCAGAACTCCGGTTCTGGAGGAAAACAGGACCTACCTCTGGAGGAAAATCACTGGAAAACAATATAAGCCTCTTTCAGACATTACTGACTTGGCATCTCCTCTTCATTCTATCACAGATTTCTGTAACAGCAGCTATTAGTAGTaggcagaaataaataaatcatattacTGTAGAATCCAGCTGTTTTTTACTGAtatcactgtactgtacttgtaTGTGCATTTGTCACATAAAGTTTTACAAacaattaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679757.1 True 1808 mRNA 0.48 13 23060575 23094876

Neighbor

gene id symbol gene type direction distance location
LOC103027426 LOC103027426 coding upstream 167274 22892472 ~ 22893301 (+)
LOC103027133 fzd9,fzd9b,LOC107563503,LOC107713270,LOC107691950 coding upstream 244177 22813535 ~ 22816398 (+)
LOC103026853 LOC108429884 coding upstream 323946 22728533 ~ 22736629 (+)
rnf7 rnf7,LOC107557824,LOC107713281,LOC107692028 coding upstream 333129 22722720 ~ 22727446 (+)
LOC103028656 LOC108264789,LOC108429874 coding upstream 668000 22302354 ~ 22392575 (+)
LOC103026225 cntn5,LOC107691883 coding downstream 282993 23377869 ~ 23673136 (+)
LOC103025495 LOC108429891 coding downstream 652866 23747742 ~ 23913263 (+)
LOC103024981 NA coding downstream 848817 23943693 ~ 23949888 (+)
nectin1 nectin1,LOC107758086,LOC107670612,LOC107563312,LOC102782356,LOC107691861 coding downstream 1124983 24219859 ~ 24614929 (+)
cxcr5 NA coding downstream 1974035 25068911 ~ 25080426 (+)
G160168 NA non-coding upstream 93984 22965333 ~ 22966591 (+)
G160160 NA non-coding upstream 112386 22911559 ~ 22948189 (+)
G160142 selenot,selt1b,LOC108429894,LOC108264179,LOC107557827,LOC107710848,LOC107684611 non-coding upstream 161178 22895055 ~ 22899397 (+)
G160137 baz1b non-coding upstream 199959 22857092 ~ 22860616 (+)
G160144 NA non-coding upstream 212812 22847391 ~ 22847763 (+)
G160212 NA non-coding downstream 132538 23227414 ~ 23227734 (+)
G160214 NA non-coding downstream 143855 23238731 ~ 23239091 (+)
G160216 NA non-coding downstream 157201 23252077 ~ 23252817 (+)
G160253 NA non-coding downstream 767067 23861943 ~ 23915300 (+)
G160308 NA non-coding downstream 1025003 24119879 ~ 24120092 (+)
G160134 NA other upstream 206494 22853412 ~ 22854081 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other upstream 907790 22147844 ~ 22152785 (+)
fam174b NA other upstream 1986002 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 2048781 21009302 ~ 21011794 (+)
G159728 NA other upstream 2323526 20736598 ~ 20737049 (+)
G160306 NA other downstream 1024253 24119129 ~ 24119825 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 3228944 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 3522386 26617262 ~ 26755313 (+)
G160919 ptx3 other downstream 3810368 26905244 ~ 26907627 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other downstream 4014795 27109671 ~ 27119264 (+)

Expression


Co-expression Network